Wall clock time and date at job start Wed Apr 1 2020 03:00:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.09006 * 109.87720 * 2 1
4 4 C 1.54317 * 109.88427 * 121.01568 * 2 1 3
5 5 H 1.08998 * 110.72899 * 215.76424 * 4 2 1
6 6 N 1.46908 * 110.71998 * 338.86478 * 4 2 1
7 7 C 1.46894 * 110.99882 * 198.18823 * 6 4 2
8 8 C 1.50706 * 109.47178 * 179.97438 * 7 6 4
9 9 O 1.21287 * 119.99380 * 0.02562 * 8 7 6
10 10 N 1.34771 * 119.99904 * 179.97438 * 8 7 6
11 11 C 1.37101 * 119.99492 * 180.02562 * 10 8 7
12 12 H 1.07996 * 120.00139 * 0.02562 * 11 10 8
13 13 C 1.38950 * 119.99982 * 180.27922 * 11 10 8
14 14 N 1.31418 * 119.99759 * 359.72676 * 13 11 10
15 15 Si 1.86799 * 120.00441 * 179.72703 * 13 11 10
16 16 H 1.48502 * 109.46718 * 359.97438 * 15 13 11
17 17 H 1.48493 * 109.47556 * 119.99681 * 15 13 11
18 18 H 1.48505 * 109.47359 * 240.00383 * 15 13 11
19 19 C 1.55164 * 103.10055 * 97.31156 * 4 2 1
20 20 C 1.55117 * 101.48312 * 35.28934 * 19 4 2
21 21 N 1.47018 * 109.88665 * 238.82727 * 2 1 3
22 22 C 1.34781 * 125.64832 * 59.47921 * 21 2 1
23 23 O 1.21275 * 120.00206 * 0.02562 * 22 21 2
24 24 C 1.50698 * 119.99970 * 180.02562 * 22 21 2
25 25 C 1.53777 * 113.61891 * 279.14517 * 24 22 21
26 26 C 1.53957 * 87.02031 * 220.05132 * 25 24 22
27 27 F 1.39900 * 113.53428 * 270.80930 * 26 25 24
28 28 F 1.39902 * 113.74603 * 139.94426 * 26 25 24
29 29 C 1.53777 * 87.11196 * 25.36091 * 26 25 24
30 30 H 1.08999 * 109.46843 * 305.25492 * 1 2 3
31 31 H 1.09001 * 109.46986 * 65.25330 * 1 2 3
32 32 H 1.08994 * 109.46826 * 185.25088 * 1 2 3
33 33 H 1.00901 * 110.99546 * 322.14036 * 6 4 2
34 34 H 1.09001 * 109.47369 * 59.99721 * 7 6 4
35 35 H 1.08998 * 109.47840 * 300.00026 * 7 6 4
36 36 H 0.96996 * 120.00853 * 0.02562 * 10 8 7
37 37 H 0.97006 * 119.99642 * 179.97438 * 14 13 11
38 38 H 1.09007 * 110.99788 * 153.48927 * 19 4 2
39 39 H 1.08992 * 111.00271 * 277.33811 * 19 4 2
40 40 H 1.09008 * 110.41779 * 204.29291 * 20 19 4
41 41 H 1.08998 * 110.30488 * 82.08991 * 20 19 4
42 42 H 1.08999 * 112.84749 * 50.34125 * 24 22 21
43 43 H 1.08999 * 113.61309 * 334.56479 * 25 24 22
44 44 H 1.08995 * 113.61719 * 105.47168 * 25 24 22
45 45 H 1.09001 * 113.61318 * 220.09704 * 29 26 25
46 46 H 1.08997 * 113.61569 * 89.19482 * 29 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9006 1.0251 0.0000
4 6 2.0548 -0.7477 1.2437
5 1 2.9639 -0.2791 1.6205
6 7 1.0264 -0.7996 2.2915
7 6 1.6218 -1.1065 3.5988
8 6 0.5390 -1.1506 4.6461
9 8 -0.6151 -0.9469 4.3338
10 7 0.8531 -1.4174 5.9292
11 6 -0.1321 -1.4581 6.8818
12 1 -1.1598 -1.2767 6.6039
13 6 0.1924 -1.7274 8.2058
14 7 1.4429 -1.9485 8.5439
15 14 -1.1489 -1.7753 9.5051
16 1 -2.4622 -1.4946 8.8712
17 1 -1.1800 -3.1195 10.1352
18 1 -0.8708 -0.7489 10.5417
19 6 2.3553 -2.1691 0.6987
20 6 2.8569 -1.8508 -0.7342
21 7 2.0301 -0.7156 -1.1829
22 6 1.7742 -0.3886 -2.4652
23 8 1.0769 0.5706 -2.7188
24 6 2.3547 -1.2150 -3.5837
25 6 3.8181 -0.8715 -3.9081
26 6 3.4431 -1.0338 -5.3924
27 9 3.5951 -2.3409 -5.8674
28 9 4.0314 -0.0797 -6.2297
29 6 2.0006 -0.6902 -4.9852
30 1 -0.3633 0.5932 0.8392
31 1 -0.3633 0.4302 -0.9333
32 1 -0.3633 -1.0233 0.0940
33 1 0.5020 0.0617 2.3262
34 1 2.3465 -0.3347 3.8582
35 1 2.1223 -2.0737 3.5522
36 1 1.7761 -1.5807 6.1788
37 1 1.6695 -2.1362 9.4683
38 1 3.1317 -2.6573 1.2879
39 1 1.4502 -2.7755 0.6689
40 1 2.7088 -2.7099 -1.3886
41 1 3.9094 -1.5683 -0.7125
42 1 2.1742 -2.2827 -3.4588
43 1 4.0980 0.1465 -3.6373
44 1 4.5305 -1.6161 -3.5529
45 1 1.2478 -1.2887 -5.4981
46 1 1.7826 0.3775 -5.0094
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001178442990.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:00:25
Heat of formation + Delta-G solvation = -137.204282 kcal
Electronic energy + Delta-G solvation = -30214.836089 eV
Core-core repulsion = 25583.121634 eV
Total energy + Delta-G solvation = -4631.714455 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.165 amu
Computer time = 0.90 seconds
Orbital eigenvalues (eV)
-49.26515 -47.59227 -40.88024 -38.99789 -38.07898 -36.97401 -34.85999 -33.84425
-31.49294 -31.24831 -30.75711 -27.05860 -26.81274 -26.36733 -25.24448 -23.85062
-23.27063 -21.27742 -19.95952 -19.44901 -19.26597 -18.28198 -17.94317 -17.27777
-16.99635 -16.68121 -16.33031 -16.22769 -15.84293 -15.34055 -14.93669 -14.69294
-14.46608 -14.42714 -14.03921 -13.90948 -13.85904 -13.75226 -13.45884 -13.23904
-13.17923 -12.67398 -12.44141 -12.29816 -12.25899 -12.06508 -11.98934 -11.89944
-11.62853 -11.55974 -11.43391 -11.13656 -10.98462 -10.96063 -10.73662 -10.36979
-10.25895 -10.03638 -9.55633 -8.95874 -8.52524 -8.17715 -8.00125 -6.45524
-3.86318 2.20225 2.52774 2.93935 3.13834 3.24842 3.25228 3.32015
3.70790 3.75870 3.82784 3.86208 4.00260 4.18706 4.25488 4.36749
4.53587 4.71660 4.86748 4.90746 4.91249 4.92295 4.99819 5.05055
5.16757 5.19745 5.21000 5.25684 5.40977 5.47248 5.52302 5.59865
5.71408 5.78095 5.90325 5.99417 6.04797 6.18968 6.22352 6.44004
7.10457 7.19905 7.52109 7.52941 7.81975 8.02667 8.56976 9.14331
9.50182 10.01242 10.72180
Molecular weight = 345.17amu
Principal moments of inertia in cm(-1)
A = 0.036955 B = 0.001735 C = 0.001695
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 757.489495 B =16133.815727 C =16517.878685
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.155 4.155
2 C 0.137 3.863
3 H 0.074 0.926
4 C 0.076 3.924
5 H 0.058 0.942
6 N -0.654 5.654
7 C 0.050 3.950
8 C 0.440 3.560
9 O -0.582 6.582
10 N -0.563 5.563
11 C -0.299 4.299
12 H 0.104 0.896
13 C 0.022 3.978
14 N -0.901 5.901
15 Si 0.929 3.071
16 H -0.268 1.268
17 H -0.281 1.281
18 H -0.282 1.282
19 C -0.123 4.123
20 C 0.097 3.903
21 N -0.607 5.607
22 C 0.544 3.456
23 O -0.531 6.531
24 C -0.130 4.130
25 C -0.148 4.148
26 C 0.256 3.744
27 F -0.178 7.178
28 F -0.187 7.187
29 C -0.142 4.142
30 H 0.070 0.930
31 H 0.064 0.936
32 H 0.068 0.932
33 H 0.354 0.646
34 H 0.044 0.956
35 H 0.086 0.914
36 H 0.392 0.608
37 H 0.271 0.729
38 H 0.084 0.916
39 H 0.090 0.910
40 H 0.078 0.922
41 H 0.071 0.929
42 H 0.127 0.873
43 H 0.116 0.884
44 H 0.103 0.897
45 H 0.100 0.900
46 H 0.126 0.874
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.471 -0.122 -23.957 25.761
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.213 4.213
2 C 0.033 3.967
3 H 0.092 0.908
4 C -0.035 4.035
5 H 0.076 0.924
6 N -0.289 5.289
7 C -0.083 4.083
8 C 0.226 3.774
9 O -0.467 6.467
10 N -0.200 5.200
11 C -0.428 4.428
12 H 0.122 0.878
13 C -0.180 4.180
14 N -0.543 5.543
15 Si 0.757 3.243
16 H -0.192 1.192
17 H -0.207 1.207
18 H -0.208 1.208
19 C -0.162 4.162
20 C -0.027 4.027
21 N -0.341 5.341
22 C 0.332 3.668
23 O -0.408 6.408
24 C -0.151 4.151
25 C -0.186 4.186
26 C 0.219 3.781
27 F -0.159 7.159
28 F -0.168 7.168
29 C -0.180 4.180
30 H 0.088 0.912
31 H 0.083 0.917
32 H 0.087 0.913
33 H 0.176 0.824
34 H 0.062 0.938
35 H 0.105 0.895
36 H 0.225 0.775
37 H 0.081 0.919
38 H 0.102 0.898
39 H 0.109 0.891
40 H 0.097 0.903
41 H 0.089 0.911
42 H 0.145 0.855
43 H 0.135 0.865
44 H 0.121 0.879
45 H 0.119 0.881
46 H 0.144 0.856
Dipole moment (debyes) X Y Z Total
from point charges 8.213 -0.130 -24.341 25.689
hybrid contribution 0.694 0.439 1.070 1.348
sum 8.907 0.309 -23.271 24.919
Atomic orbital electron populations
1.21985 0.93339 1.03606 1.02409 1.21631 0.96110 0.95269 0.83644
0.90776 1.22560 0.94010 0.95690 0.91217 0.92425 1.60317 1.23326
1.42201 1.03084 1.21724 0.95995 1.01438 0.89134 1.19772 0.89625
0.84656 0.83385 1.90532 1.20607 1.54780 1.80732 1.41865 1.10601
1.61662 1.05868 1.19755 0.91017 1.45098 0.86968 0.87841 1.25270
0.97221 0.97205 0.98286 1.69622 1.16967 1.48335 1.19365 0.85798
0.80713 0.77760 0.80068 1.19202 1.20731 1.20770 1.22916 1.02657
0.97167 0.93442 1.22464 0.94802 0.88851 0.96534 1.48480 1.50292
1.30460 1.04831 1.19622 0.80582 0.84763 0.81877 1.90719 1.38283
1.28775 1.83019 1.22527 0.96609 1.01931 0.94023 1.24047 0.96705
1.06024 0.91849 1.22004 0.96076 0.72820 0.87193 1.93035 1.96501
1.36313 1.90007 1.93031 1.85907 1.63107 1.74744 1.24005 0.94311
1.06022 0.93667 0.91171 0.91696 0.91260 0.82368 0.93772 0.89531
0.77476 0.91912 0.89776 0.89092 0.90343 0.91081 0.85523 0.86518
0.87854 0.88120 0.85552
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.95 8.31 37.16 0.31 -1.64 16
2 C 0.14 1.48 3.41 -66.96 -0.23 1.26 16
3 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16
4 C 0.08 0.82 3.09 -65.87 -0.20 0.61 16
5 H 0.06 0.57 7.93 -51.93 -0.41 0.16 16
6 N -0.65 -9.46 5.15 -106.05 -0.55 -10.01 16
7 C 0.05 0.80 6.02 -4.98 -0.03 0.77 16
8 C 0.44 9.95 7.82 -10.99 -0.09 9.86 16
9 O -0.58 -15.31 15.78 5.55 0.09 -15.23 16
10 N -0.56 -13.83 5.29 -10.96 -0.06 -13.89 16
11 C -0.30 -8.18 9.68 -14.93 -0.14 -8.32 16
12 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16
13 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16
14 N -0.90 -24.07 13.05 55.50 0.72 -23.35 16
15 Si 0.93 20.75 29.55 -169.99 -5.02 15.73 16
16 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16
17 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16
18 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16
19 C -0.12 -1.08 6.63 -24.47 -0.16 -1.25 16
20 C 0.10 0.65 6.69 -2.42 -0.02 0.63 16
21 N -0.61 -5.64 3.08 -162.89 -0.50 -6.14 16
22 C 0.54 5.41 7.15 -10.98 -0.08 5.33 16
23 O -0.53 -7.17 14.73 5.56 0.08 -7.09 16
24 C -0.13 -0.86 3.25 -90.96 -0.30 -1.15 16
25 C -0.15 -0.82 7.43 -25.83 -0.19 -1.01 16
26 C 0.26 1.84 3.28 -25.83 -0.08 1.76 16
27 F -0.18 -1.45 17.38 2.25 0.04 -1.41 16
28 F -0.19 -1.69 17.42 2.25 0.04 -1.65 16
29 C -0.14 -0.98 7.18 -25.92 -0.19 -1.16 16
30 H 0.07 0.90 6.61 -51.93 -0.34 0.56 16
31 H 0.06 0.88 6.58 -51.93 -0.34 0.54 16
32 H 0.07 0.94 8.11 -51.93 -0.42 0.52 16
33 H 0.35 5.45 6.38 -39.29 -0.25 5.20 16
34 H 0.04 0.64 8.09 -51.93 -0.42 0.22 16
35 H 0.09 1.26 8.06 -51.93 -0.42 0.85 16
36 H 0.39 9.17 7.90 -40.82 -0.32 8.84 16
37 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16
38 H 0.08 0.64 8.14 -51.92 -0.42 0.22 16
39 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16
40 H 0.08 0.40 7.28 -51.92 -0.38 0.02 16
41 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16
42 H 0.13 0.63 7.54 -51.93 -0.39 0.24 16
43 H 0.12 0.65 8.09 -51.93 -0.42 0.23 16
44 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16
45 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16
46 H 0.13 0.99 7.45 -51.93 -0.39 0.60 16
LS Contribution 382.54 15.07 5.76 5.76
Total: -1.00 -32.50 382.54 -7.44 -39.95
By element:
Atomic # 1 Polarization: 17.72 SS G_CDS: -6.55 Total: 11.16 kcal
Atomic # 6 Polarization: 7.66 SS G_CDS: -1.50 Total: 6.16 kcal
Atomic # 7 Polarization: -53.01 SS G_CDS: -0.38 Total: -53.39 kcal
Atomic # 8 Polarization: -22.49 SS G_CDS: 0.17 Total: -22.32 kcal
Atomic # 9 Polarization: -3.14 SS G_CDS: 0.08 Total: -3.06 kcal
Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal
Total LS contribution 5.76 Total: 5.76 kcal
Total: -32.50 -7.44 -39.95 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001178442990.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -97.259 kcal
(2) G-P(sol) polarization free energy of solvation -32.504 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.763 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.441 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.946 kcal
(6) G-S(sol) free energy of system = (1) + (5) -137.204 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.91 seconds