Wall clock time and date at job start Wed Apr 1 2020 03:00:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.09006 * 109.87720 * 2 1
4 4 C 1.54317 * 109.88427 * 121.01568 * 2 1 3
5 5 H 1.08998 * 110.72899 * 215.76424 * 4 2 1
6 6 N 1.46908 * 110.71998 * 338.86478 * 4 2 1
7 7 C 1.46894 * 110.99882 * 198.18823 * 6 4 2
8 8 C 1.50706 * 109.47178 * 179.97438 * 7 6 4
9 9 O 1.21287 * 119.99380 * 0.02562 * 8 7 6
10 10 N 1.34771 * 119.99904 * 179.97438 * 8 7 6
11 11 C 1.37101 * 119.99492 * 180.02562 * 10 8 7
12 12 H 1.07996 * 120.00139 * 0.02562 * 11 10 8
13 13 C 1.38950 * 119.99982 * 180.27922 * 11 10 8
14 14 N 1.31418 * 119.99759 * 359.72676 * 13 11 10
15 15 Si 1.86799 * 120.00441 * 179.72703 * 13 11 10
16 16 H 1.48502 * 109.46718 * 359.97438 * 15 13 11
17 17 H 1.48493 * 109.47556 * 119.99681 * 15 13 11
18 18 H 1.48505 * 109.47359 * 240.00383 * 15 13 11
19 19 C 1.55164 * 103.10055 * 97.31156 * 4 2 1
20 20 C 1.55117 * 101.48312 * 35.28934 * 19 4 2
21 21 N 1.47018 * 109.88665 * 238.82727 * 2 1 3
22 22 C 1.34781 * 125.64832 * 59.47921 * 21 2 1
23 23 O 1.21275 * 120.00206 * 0.02562 * 22 21 2
24 24 C 1.50698 * 119.99970 * 180.02562 * 22 21 2
25 25 C 1.53777 * 113.61891 * 279.14517 * 24 22 21
26 26 C 1.53957 * 87.02031 * 220.05132 * 25 24 22
27 27 F 1.39900 * 113.53428 * 270.80930 * 26 25 24
28 28 F 1.39902 * 113.74603 * 139.94426 * 26 25 24
29 29 C 1.53777 * 87.11196 * 25.36091 * 26 25 24
30 30 H 1.08999 * 109.46843 * 305.25492 * 1 2 3
31 31 H 1.09001 * 109.46986 * 65.25330 * 1 2 3
32 32 H 1.08994 * 109.46826 * 185.25088 * 1 2 3
33 33 H 1.00901 * 110.99546 * 322.14036 * 6 4 2
34 34 H 1.09001 * 109.47369 * 59.99721 * 7 6 4
35 35 H 1.08998 * 109.47840 * 300.00026 * 7 6 4
36 36 H 0.96996 * 120.00853 * 0.02562 * 10 8 7
37 37 H 0.97006 * 119.99642 * 179.97438 * 14 13 11
38 38 H 1.09007 * 110.99788 * 153.48927 * 19 4 2
39 39 H 1.08992 * 111.00271 * 277.33811 * 19 4 2
40 40 H 1.09008 * 110.41779 * 204.29291 * 20 19 4
41 41 H 1.08998 * 110.30488 * 82.08991 * 20 19 4
42 42 H 1.08999 * 112.84749 * 50.34125 * 24 22 21
43 43 H 1.08999 * 113.61309 * 334.56479 * 25 24 22
44 44 H 1.08995 * 113.61719 * 105.47168 * 25 24 22
45 45 H 1.09001 * 113.61318 * 220.09704 * 29 26 25
46 46 H 1.08997 * 113.61569 * 89.19482 * 29 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9006 1.0251 0.0000
4 6 2.0548 -0.7477 1.2437
5 1 2.9639 -0.2791 1.6205
6 7 1.0264 -0.7996 2.2915
7 6 1.6218 -1.1065 3.5988
8 6 0.5390 -1.1506 4.6461
9 8 -0.6151 -0.9469 4.3338
10 7 0.8531 -1.4174 5.9292
11 6 -0.1321 -1.4581 6.8818
12 1 -1.1598 -1.2767 6.6039
13 6 0.1924 -1.7274 8.2058
14 7 1.4429 -1.9485 8.5439
15 14 -1.1489 -1.7753 9.5051
16 1 -2.4622 -1.4946 8.8712
17 1 -1.1800 -3.1195 10.1352
18 1 -0.8708 -0.7489 10.5417
19 6 2.3553 -2.1691 0.6987
20 6 2.8569 -1.8508 -0.7342
21 7 2.0301 -0.7156 -1.1829
22 6 1.7742 -0.3886 -2.4652
23 8 1.0769 0.5706 -2.7188
24 6 2.3547 -1.2150 -3.5837
25 6 3.8181 -0.8715 -3.9081
26 6 3.4431 -1.0338 -5.3924
27 9 3.5951 -2.3409 -5.8674
28 9 4.0314 -0.0797 -6.2297
29 6 2.0006 -0.6902 -4.9852
30 1 -0.3633 0.5932 0.8392
31 1 -0.3633 0.4302 -0.9333
32 1 -0.3633 -1.0233 0.0940
33 1 0.5020 0.0617 2.3262
34 1 2.3465 -0.3347 3.8582
35 1 2.1223 -2.0737 3.5522
36 1 1.7761 -1.5807 6.1788
37 1 1.6695 -2.1362 9.4683
38 1 3.1317 -2.6573 1.2879
39 1 1.4502 -2.7755 0.6689
40 1 2.7088 -2.7099 -1.3886
41 1 3.9094 -1.5683 -0.7125
42 1 2.1742 -2.2827 -3.4588
43 1 4.0980 0.1465 -3.6373
44 1 4.5305 -1.6161 -3.5529
45 1 1.2478 -1.2887 -5.4981
46 1 1.7826 0.3775 -5.0094
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001178442990.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:00:24
Heat of formation + Delta-G solvation = -159.615429 kcal
Electronic energy + Delta-G solvation = -30215.807909 eV
Core-core repulsion = 25583.121634 eV
Total energy + Delta-G solvation = -4632.686276 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.165 amu
Computer time = 1.04 seconds
Orbital eigenvalues (eV)
-49.85680 -48.20081 -41.63039 -40.22449 -39.39742 -37.69843 -36.19356 -35.54771
-33.26672 -32.31110 -31.70186 -28.35519 -27.28870 -27.17511 -26.50983 -25.27309
-23.97200 -21.93211 -21.07578 -20.71840 -20.11000 -19.89580 -18.94030 -17.93551
-17.77051 -17.59136 -17.25318 -17.12295 -16.91019 -16.55114 -16.34074 -15.91140
-15.55970 -15.40414 -15.08170 -15.05400 -14.72505 -14.47981 -14.42894 -14.29521
-14.00135 -13.67241 -13.49931 -13.44260 -13.36236 -13.15831 -12.95231 -12.86053
-12.71893 -12.52575 -12.45674 -12.39962 -12.30174 -12.11733 -11.82084 -11.61059
-11.50220 -11.47412 -10.85107 -10.32319 -9.99894 -9.71603 -9.33371 -8.46221
-5.94283 1.36831 1.42524 1.47871 1.56087 1.80923 2.07547 2.29830
2.41589 2.73540 2.93085 3.15589 3.21231 3.21714 3.27984 3.48120
3.54524 3.68592 3.90171 4.06587 4.22136 4.28573 4.32798 4.34966
4.37473 4.45026 4.46761 4.53787 4.61994 4.62344 4.66094 4.70218
4.72589 4.80619 5.02328 5.05891 5.09662 5.28227 5.32362 5.41426
5.42584 5.90778 6.12213 6.34187 6.49737 6.61678 7.07561 7.14335
7.58459 8.14073 8.71240
Molecular weight = 345.17amu
Principal moments of inertia in cm(-1)
A = 0.036955 B = 0.001735 C = 0.001695
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 757.489495 B =16133.815727 C =16517.878685
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C 0.138 3.862
3 H 0.071 0.929
4 C 0.079 3.921
5 H 0.077 0.923
6 N -0.669 5.669
7 C 0.067 3.933
8 C 0.437 3.563
9 O -0.625 6.625
10 N -0.573 5.573
11 C -0.332 4.332
12 H 0.077 0.923
13 C -0.013 4.013
14 N -0.919 5.919
15 Si 0.991 3.009
16 H -0.275 1.275
17 H -0.271 1.271
18 H -0.271 1.271
19 C -0.121 4.121
20 C 0.098 3.902
21 N -0.606 5.606
22 C 0.540 3.460
23 O -0.576 6.576
24 C -0.121 4.121
25 C -0.134 4.134
26 C 0.251 3.749
27 F -0.182 7.182
28 F -0.200 7.200
29 C -0.146 4.146
30 H 0.059 0.941
31 H 0.050 0.950
32 H 0.055 0.945
33 H 0.345 0.655
34 H 0.069 0.931
35 H 0.110 0.890
36 H 0.397 0.603
37 H 0.277 0.723
38 H 0.103 0.897
39 H 0.070 0.930
40 H 0.103 0.897
41 H 0.099 0.901
42 H 0.151 0.849
43 H 0.116 0.884
44 H 0.131 0.869
45 H 0.108 0.892
46 H 0.112 0.888
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.650 -1.345 -24.176 26.870
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C 0.034 3.966
3 H 0.089 0.911
4 C -0.032 4.032
5 H 0.095 0.905
6 N -0.303 5.303
7 C -0.066 4.066
8 C 0.225 3.775
9 O -0.511 6.511
10 N -0.211 5.211
11 C -0.462 4.462
12 H 0.095 0.905
13 C -0.212 4.212
14 N -0.560 5.560
15 Si 0.815 3.185
16 H -0.200 1.200
17 H -0.196 1.196
18 H -0.197 1.197
19 C -0.160 4.160
20 C -0.024 4.024
21 N -0.339 5.339
22 C 0.329 3.671
23 O -0.455 6.455
24 C -0.142 4.142
25 C -0.172 4.172
26 C 0.214 3.786
27 F -0.163 7.163
28 F -0.181 7.181
29 C -0.184 4.184
30 H 0.078 0.922
31 H 0.069 0.931
32 H 0.074 0.926
33 H 0.166 0.834
34 H 0.086 0.914
35 H 0.128 0.872
36 H 0.231 0.769
37 H 0.087 0.913
38 H 0.122 0.878
39 H 0.089 0.911
40 H 0.121 0.879
41 H 0.117 0.883
42 H 0.169 0.831
43 H 0.134 0.866
44 H 0.149 0.851
45 H 0.127 0.873
46 H 0.130 0.870
Dipole moment (debyes) X Y Z Total
from point charges 10.447 -1.384 -24.564 26.729
hybrid contribution -0.023 0.844 1.070 1.363
sum 10.424 -0.540 -23.494 25.709
Atomic orbital electron populations
1.21846 0.95162 1.02235 1.01140 1.21500 0.94580 0.95655 0.84833
0.91070 1.22647 0.93394 0.97373 0.89752 0.90491 1.60326 1.24844
1.42031 1.03129 1.21569 0.93708 1.03548 0.87734 1.20944 0.90609
0.82161 0.83799 1.90504 1.23123 1.55999 1.81479 1.41925 1.10288
1.62487 1.06382 1.19674 0.90748 1.47241 0.88499 0.90490 1.25997
0.99400 0.96320 0.99531 1.69671 1.18036 1.48182 1.20123 0.84902
0.77755 0.78305 0.77571 1.19974 1.19614 1.19673 1.22927 1.02521
0.95495 0.95040 1.22696 0.95544 0.88708 0.95434 1.48548 1.50214
1.30892 1.04214 1.20202 0.79913 0.84443 0.82545 1.90705 1.40309
1.30837 1.83692 1.22551 0.97171 1.02400 0.92054 1.24030 0.96358
1.06889 0.89956 1.22168 0.96220 0.72307 0.87870 1.93025 1.96525
1.36550 1.90194 1.93004 1.86114 1.63692 1.75316 1.24009 0.94692
1.05417 0.94298 0.92166 0.93140 0.92605 0.83405 0.91353 0.87202
0.76884 0.91333 0.87828 0.91085 0.87896 0.88294 0.83148 0.86588
0.85119 0.87327 0.86963
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.77 8.31 71.98 0.60 -3.18 16
2 C 0.14 2.86 3.41 45.34 0.15 3.02 16
3 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16
4 C 0.08 1.50 3.09 46.10 0.14 1.64 16
5 H 0.08 1.24 7.93 -2.39 -0.02 1.22 16
6 N -0.67 -18.72 5.15 -489.44 -2.52 -21.24 16
7 C 0.07 2.03 6.02 85.56 0.52 2.55 16
8 C 0.44 19.87 7.82 87.66 0.69 20.56 16
9 O -0.62 -33.77 15.78 -3.05 -0.05 -33.82 16
10 N -0.57 -28.42 5.29 -306.99 -1.62 -30.05 16
11 C -0.33 -18.54 9.68 84.04 0.81 -17.73 16
12 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16
13 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16
14 N -0.92 -48.53 13.05 21.66 0.28 -48.25 16
15 Si 0.99 42.45 29.55 68.60 2.03 44.48 16
16 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16
17 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16
18 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16
19 C -0.12 -1.75 6.63 32.06 0.21 -1.53 16
20 C 0.10 0.92 6.69 86.93 0.58 1.50 16
21 N -0.61 -9.98 3.08 -787.65 -2.43 -12.41 16
22 C 0.54 10.00 7.15 87.66 0.63 10.62 16
23 O -0.58 -15.69 14.73 -3.01 -0.04 -15.74 16
24 C -0.12 -1.30 3.25 -11.01 -0.04 -1.34 16
25 C -0.13 -1.08 7.43 31.18 0.23 -0.85 16
26 C 0.25 3.16 3.28 31.18 0.10 3.26 16
27 F -0.18 -2.57 17.38 44.97 0.78 -1.79 16
28 F -0.20 -3.43 17.42 44.97 0.78 -2.64 16
29 C -0.15 -1.86 7.18 31.12 0.22 -1.63 16
30 H 0.06 1.64 6.61 -2.39 -0.02 1.63 16
31 H 0.05 1.44 6.58 -2.39 -0.02 1.42 16
32 H 0.05 1.57 8.11 -2.39 -0.02 1.55 16
33 H 0.34 10.71 6.38 -89.69 -0.57 10.14 16
34 H 0.07 1.79 8.09 -2.39 -0.02 1.78 16
35 H 0.11 2.89 8.06 -2.39 -0.02 2.87 16
36 H 0.40 18.51 7.90 -92.71 -0.73 17.78 16
37 H 0.28 13.68 8.31 -92.70 -0.77 12.91 16
38 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16
39 H 0.07 1.34 8.14 -2.39 -0.02 1.33 16
40 H 0.10 0.53 7.28 -2.38 -0.02 0.51 16
41 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16
42 H 0.15 0.93 7.54 -2.39 -0.02 0.92 16
43 H 0.12 1.01 8.09 -2.39 -0.02 0.99 16
44 H 0.13 0.38 8.14 -2.39 -0.02 0.36 16
45 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16
46 H 0.11 1.79 7.45 -2.39 -0.02 1.77 16
Total: -1.00 -73.15 382.54 2.26 -70.89
By element:
Atomic # 1 Polarization: 34.15 SS G_CDS: -0.27 Total: 33.88 kcal
Atomic # 6 Polarization: 11.37 SS G_CDS: 5.32 Total: 16.69 kcal
Atomic # 7 Polarization: -105.66 SS G_CDS: -6.29 Total: -111.95 kcal
Atomic # 8 Polarization: -49.46 SS G_CDS: -0.09 Total: -49.56 kcal
Atomic # 9 Polarization: -6.00 SS G_CDS: 1.56 Total: -4.44 kcal
Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal
Total: -73.15 2.26 -70.89 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001178442990.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -88.724 kcal
(2) G-P(sol) polarization free energy of solvation -73.152 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.876 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.260 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.891 kcal
(6) G-S(sol) free energy of system = (1) + (5) -159.615 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.04 seconds