Wall clock time and date at job start Wed Apr 1 2020 03:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.87522 * 2 1 4 4 C 1.54317 * 109.88396 * 121.18040 * 2 1 3 5 5 H 1.09003 * 110.72388 * 215.58557 * 4 2 1 6 6 N 1.46905 * 110.71940 * 338.86007 * 4 2 1 7 7 C 1.46901 * 110.99675 * 198.47499 * 6 4 2 8 8 C 1.50704 * 109.46789 * 179.97438 * 7 6 4 9 9 O 1.21293 * 120.00291 * 0.02562 * 8 7 6 10 10 N 1.34774 * 119.99777 * 180.02562 * 8 7 6 11 11 C 1.37106 * 119.99658 * 180.02562 * 10 8 7 12 12 H 1.07998 * 120.00249 * 359.97438 * 11 10 8 13 13 C 1.38948 * 119.99545 * 179.97438 * 11 10 8 14 14 N 1.31410 * 120.00403 * 359.97438 * 13 11 10 15 15 Si 1.86807 * 119.99738 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.46858 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.47150 * 119.99709 * 15 13 11 18 18 H 1.48492 * 109.47067 * 239.99643 * 15 13 11 19 19 C 1.55163 * 102.94658 * 97.22165 * 4 2 1 20 20 C 1.54909 * 101.57595 * 35.50258 * 19 4 2 21 21 N 1.47022 * 109.88082 * 238.98545 * 2 1 3 22 22 C 1.34779 * 125.64790 * 59.56114 * 21 2 1 23 23 O 1.21285 * 119.99888 * 359.97438 * 22 21 2 24 24 C 1.50700 * 120.00091 * 180.02562 * 22 21 2 25 25 H 1.09001 * 115.54860 * 325.58056 * 24 22 21 26 26 C 1.53003 * 117.49971 * 111.25038 * 24 22 21 27 27 C 1.53005 * 117.49877 * 179.91258 * 24 22 21 28 28 H 1.08998 * 117.50101 * 359.97438 * 27 24 22 29 29 C 1.53003 * 117.50033 * 145.02247 * 27 24 22 30 30 F 1.39892 * 109.46991 * 179.97438 * 29 27 24 31 31 F 1.39903 * 109.46545 * 299.99925 * 29 27 24 32 32 H 1.08998 * 109.47374 * 187.14357 * 1 2 3 33 33 H 1.08995 * 109.47438 * 67.14539 * 1 2 3 34 34 H 1.08999 * 109.46809 * 307.14536 * 1 2 3 35 35 H 1.00903 * 110.99809 * 322.42684 * 6 4 2 36 36 H 1.09001 * 109.47600 * 299.99812 * 7 6 4 37 37 H 1.08997 * 109.47541 * 60.00339 * 7 6 4 38 38 H 0.96997 * 120.00571 * 359.97438 * 10 8 7 39 39 H 0.97006 * 119.99876 * 180.02562 * 14 13 11 40 40 H 1.08999 * 111.00259 * 277.43188 * 19 4 2 41 41 H 1.08993 * 111.00704 * 153.57343 * 19 4 2 42 42 H 1.09009 * 110.36339 * 204.15303 * 20 19 4 43 43 H 1.08998 * 110.46463 * 81.87755 * 20 19 4 44 44 H 1.08997 * 117.50192 * 214.97716 * 26 24 22 45 45 H 1.09004 * 117.49881 * 359.97438 * 26 24 22 46 46 H 1.09001 * 109.47173 * 59.99381 * 29 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 6 2.0548 -0.7513 1.2415 5 1 2.9657 -0.2856 1.6178 6 7 1.0264 -0.8061 2.2892 7 6 1.6228 -1.1101 3.5968 8 6 0.5400 -1.1573 4.6439 9 8 -0.6149 -0.9578 4.3315 10 7 0.8549 -1.4211 5.9275 11 6 -0.1303 -1.4646 6.8800 12 1 -1.1586 -1.2870 6.6018 13 6 0.1944 -1.7371 8.2033 14 7 1.4455 -1.9537 8.5417 15 14 -1.1478 -1.7956 9.5012 16 1 -2.4619 -1.5199 8.8670 17 1 -1.1734 -3.1423 10.1266 18 1 -0.8752 -0.7719 10.5417 19 6 2.3518 -2.1706 0.6892 20 6 2.8567 -1.8487 -0.7395 21 7 2.0300 -0.7124 -1.1849 22 6 1.7753 -0.3809 -2.4663 23 8 1.0784 0.5795 -2.7172 24 6 2.3554 -1.2044 -3.5872 25 1 3.3446 -1.6224 -3.4002 26 6 1.3849 -2.0354 -4.4289 27 6 2.0279 -0.7780 -5.0197 28 1 1.3925 0.0977 -5.1514 29 6 3.1137 -0.9717 -6.0801 30 9 2.6389 -0.5300 -7.3197 31 9 4.2487 -0.2346 -5.7254 32 1 -0.3634 -1.0196 0.1278 33 1 -0.3634 0.3991 -0.9469 34 1 -0.3633 0.6205 0.8192 35 1 0.4989 0.0534 2.3233 36 1 2.1266 -2.0756 3.5509 37 1 2.3447 -0.3356 3.8559 38 1 1.7784 -1.5810 6.1774 39 1 1.6721 -2.1443 9.4655 40 1 1.4451 -2.7746 0.6563 41 1 3.1270 -2.6637 1.2756 42 1 2.7087 -2.7061 -1.3962 43 1 3.9093 -1.5663 -0.7171 44 1 1.7356 -2.9999 -4.7960 45 1 0.3268 -1.9868 -4.1716 46 1 3.3728 -2.0284 -6.1462 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178622323.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:08 Heat of formation + Delta-G solvation = -138.831726 kcal Electronic energy + Delta-G solvation = -29870.720783 eV Core-core repulsion = 25238.935756 eV Total energy + Delta-G solvation = -4631.785027 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.34843 -47.38078 -40.76680 -38.93506 -38.05615 -36.77659 -34.83601 -33.83468 -31.47863 -31.23747 -30.73468 -27.82928 -26.75405 -25.41569 -24.75984 -23.77208 -22.84280 -21.93203 -20.01238 -19.39744 -19.19577 -18.28191 -17.93736 -17.61745 -17.40232 -16.74333 -16.29865 -16.13063 -15.81320 -15.33684 -15.14142 -14.52180 -14.32414 -14.21951 -14.15352 -13.78196 -13.74902 -13.72552 -13.51373 -13.20993 -13.06983 -12.74740 -12.43915 -12.37264 -12.27211 -12.00105 -11.64863 -11.57085 -11.49243 -11.44922 -11.25963 -11.15096 -11.09526 -10.93221 -10.72099 -10.36551 -10.25358 -10.04392 -9.55027 -8.92063 -8.51515 -8.16586 -7.99479 -6.44904 -3.85717 2.07897 2.48381 3.01583 3.14267 3.25200 3.27594 3.32468 3.66016 3.86962 3.89690 3.97490 4.02804 4.15998 4.25805 4.34602 4.40035 4.55086 4.62534 4.69580 4.93425 4.94158 5.00478 5.06633 5.18353 5.22070 5.26633 5.30598 5.43265 5.47232 5.49539 5.58693 5.73288 5.79791 5.91439 6.01138 6.06434 6.21691 6.23343 6.45075 7.11973 7.23548 7.52646 7.54203 7.87503 8.03315 8.57678 9.14944 9.50862 10.01976 10.72797 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.038784 B = 0.001669 C = 0.001641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.766416 B =16772.784215 C =17061.360666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.137 3.863 3 H 0.074 0.926 4 C 0.076 3.924 5 H 0.059 0.941 6 N -0.654 5.654 7 C 0.050 3.950 8 C 0.440 3.560 9 O -0.582 6.582 10 N -0.563 5.563 11 C -0.299 4.299 12 H 0.104 0.896 13 C 0.022 3.978 14 N -0.901 5.901 15 Si 0.929 3.071 16 H -0.268 1.268 17 H -0.281 1.281 18 H -0.282 1.282 19 C -0.123 4.123 20 C 0.097 3.903 21 N -0.606 5.606 22 C 0.560 3.440 23 O -0.534 6.534 24 C -0.164 4.164 25 H 0.131 0.869 26 C -0.126 4.126 27 C -0.193 4.193 28 H 0.141 0.859 29 C 0.297 3.703 30 F -0.199 7.199 31 F -0.201 7.201 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.354 0.646 36 H 0.087 0.913 37 H 0.044 0.956 38 H 0.392 0.608 39 H 0.271 0.729 40 H 0.090 0.910 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.070 0.930 44 H 0.114 0.886 45 H 0.114 0.886 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.639 -2.674 -25.305 26.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.034 3.966 3 H 0.092 0.908 4 C -0.035 4.035 5 H 0.076 0.924 6 N -0.289 5.289 7 C -0.083 4.083 8 C 0.226 3.774 9 O -0.467 6.467 10 N -0.200 5.200 11 C -0.429 4.429 12 H 0.122 0.878 13 C -0.179 4.179 14 N -0.543 5.543 15 Si 0.756 3.244 16 H -0.192 1.192 17 H -0.207 1.207 18 H -0.208 1.208 19 C -0.161 4.161 20 C -0.026 4.026 21 N -0.339 5.339 22 C 0.348 3.652 23 O -0.411 6.411 24 C -0.185 4.185 25 H 0.149 0.851 26 C -0.163 4.163 27 C -0.212 4.212 28 H 0.159 0.841 29 C 0.243 3.757 30 F -0.181 7.181 31 F -0.183 7.183 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.176 0.824 36 H 0.105 0.895 37 H 0.062 0.938 38 H 0.225 0.775 39 H 0.081 0.919 40 H 0.109 0.891 41 H 0.102 0.898 42 H 0.097 0.903 43 H 0.089 0.911 44 H 0.133 0.867 45 H 0.132 0.868 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 7.385 -2.644 -25.666 26.838 hybrid contribution 0.713 0.746 1.187 1.573 sum 8.098 -1.898 -24.478 25.853 Atomic orbital electron populations 1.21987 0.93371 1.03628 1.02373 1.21632 0.96083 0.95309 0.83566 0.90806 1.22558 0.94037 0.95689 0.91181 0.92363 1.60319 1.23114 1.42388 1.03063 1.21727 0.96003 1.01445 0.89129 1.19775 0.89625 0.84642 0.83378 1.90533 1.20552 1.54824 1.80745 1.41867 1.10550 1.61755 1.05833 1.19758 0.90989 1.45101 0.87012 0.87842 1.25264 0.97209 0.97196 0.98277 1.69618 1.16930 1.48346 1.19390 0.85800 0.80725 0.77755 0.80072 1.19208 1.20740 1.20766 1.22874 1.02618 0.97154 0.93479 1.22424 0.94761 0.88850 0.96546 1.48369 1.50448 1.30484 1.04643 1.19026 0.80318 0.84248 0.81631 1.90720 1.38642 1.28558 1.83157 1.22186 1.02219 1.03832 0.90282 0.85103 1.23159 0.99633 0.94312 0.99236 1.23386 1.01844 1.03272 0.92687 0.84139 1.21289 0.80963 0.94189 0.79234 1.93004 1.88758 1.91732 1.44577 1.93017 1.52786 1.80506 1.91948 0.91150 0.91734 0.91242 0.82376 0.89522 0.93758 0.77475 0.91916 0.89091 0.89823 0.90263 0.91146 0.86741 0.86766 0.86905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.01 8.30 37.16 0.31 -1.70 16 2 C 0.14 1.58 3.41 -66.96 -0.23 1.35 16 3 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 4 C 0.08 0.85 3.10 -65.88 -0.20 0.65 16 5 H 0.06 0.61 7.93 -51.93 -0.41 0.19 16 6 N -0.65 -9.63 5.12 -106.05 -0.54 -10.17 16 7 C 0.05 0.81 6.02 -4.97 -0.03 0.78 16 8 C 0.44 10.01 7.82 -10.98 -0.09 9.92 16 9 O -0.58 -15.38 15.78 5.55 0.09 -15.29 16 10 N -0.56 -13.90 5.29 -10.96 -0.06 -13.95 16 11 C -0.30 -8.21 9.68 -14.93 -0.14 -8.35 16 12 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 13 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 14 N -0.90 -24.13 13.05 55.50 0.72 -23.40 16 15 Si 0.93 20.79 29.55 -169.99 -5.02 15.77 16 16 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 17 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 18 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 19 C -0.12 -1.12 6.64 -24.58 -0.16 -1.28 16 20 C 0.10 0.71 6.48 -2.53 -0.02 0.69 16 21 N -0.61 -6.13 3.08 -163.02 -0.50 -6.64 16 22 C 0.56 6.18 7.41 -10.98 -0.08 6.10 16 23 O -0.53 -7.88 15.07 5.55 0.08 -7.79 16 24 C -0.16 -1.17 4.93 -91.77 -0.45 -1.62 16 25 H 0.13 0.65 7.78 -51.93 -0.40 0.25 16 26 C -0.13 -0.65 9.88 -26.69 -0.26 -0.91 16 27 C -0.19 -1.37 5.41 -90.57 -0.49 -1.86 16 28 H 0.14 1.30 7.67 -51.93 -0.40 0.90 16 29 C 0.30 1.86 5.50 37.16 0.20 2.06 16 30 F -0.20 -1.68 17.34 2.25 0.04 -1.64 16 31 F -0.20 -1.76 17.29 2.25 0.04 -1.72 16 32 H 0.07 0.97 8.05 -51.93 -0.42 0.56 16 33 H 0.06 0.90 6.54 -51.93 -0.34 0.56 16 34 H 0.07 0.91 6.72 -51.93 -0.35 0.57 16 35 H 0.35 5.56 6.41 -39.29 -0.25 5.30 16 36 H 0.09 1.28 8.08 -51.93 -0.42 0.86 16 37 H 0.04 0.65 8.09 -51.93 -0.42 0.23 16 38 H 0.39 9.21 7.90 -40.82 -0.32 8.89 16 39 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 40 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.08 0.42 7.67 -51.92 -0.40 0.03 16 43 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.11 0.25 8.05 -51.93 -0.42 -0.16 16 45 H 0.11 0.69 8.14 -51.93 -0.42 0.26 16 46 H 0.11 0.29 7.90 -51.93 -0.41 -0.12 16 LS Contribution 387.91 15.07 5.85 5.85 Total: -1.00 -33.58 387.91 -7.63 -41.21 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: -6.58 Total: 11.47 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: -1.74 Total: 6.31 kcal Atomic # 7 Polarization: -53.78 SS G_CDS: -0.38 Total: -54.16 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: 0.17 Total: -23.09 kcal Atomic # 9 Polarization: -3.44 SS G_CDS: 0.08 Total: -3.36 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.58 -7.63 -41.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178622323.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.621 kcal (2) G-P(sol) polarization free energy of solvation -33.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds