Wall clock time and date at job start Wed Apr 1 2020 03:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.87522 * 2 1 4 4 C 1.54317 * 109.88396 * 121.18040 * 2 1 3 5 5 H 1.09003 * 110.72388 * 215.58557 * 4 2 1 6 6 N 1.46905 * 110.71940 * 338.86007 * 4 2 1 7 7 C 1.46901 * 110.99675 * 198.47499 * 6 4 2 8 8 C 1.50704 * 109.46789 * 179.97438 * 7 6 4 9 9 O 1.21293 * 120.00291 * 0.02562 * 8 7 6 10 10 N 1.34774 * 119.99777 * 180.02562 * 8 7 6 11 11 C 1.37106 * 119.99658 * 180.02562 * 10 8 7 12 12 H 1.07998 * 120.00249 * 359.97438 * 11 10 8 13 13 C 1.38948 * 119.99545 * 179.97438 * 11 10 8 14 14 N 1.31410 * 120.00403 * 359.97438 * 13 11 10 15 15 Si 1.86807 * 119.99738 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.46858 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.47150 * 119.99709 * 15 13 11 18 18 H 1.48492 * 109.47067 * 239.99643 * 15 13 11 19 19 C 1.55163 * 102.94658 * 97.22165 * 4 2 1 20 20 C 1.54909 * 101.57595 * 35.50258 * 19 4 2 21 21 N 1.47022 * 109.88082 * 238.98545 * 2 1 3 22 22 C 1.34779 * 125.64790 * 59.56114 * 21 2 1 23 23 O 1.21285 * 119.99888 * 359.97438 * 22 21 2 24 24 C 1.50700 * 120.00091 * 180.02562 * 22 21 2 25 25 H 1.09001 * 115.54860 * 325.58056 * 24 22 21 26 26 C 1.53003 * 117.49971 * 111.25038 * 24 22 21 27 27 C 1.53005 * 117.49877 * 179.91258 * 24 22 21 28 28 H 1.08998 * 117.50101 * 359.97438 * 27 24 22 29 29 C 1.53003 * 117.50033 * 145.02247 * 27 24 22 30 30 F 1.39892 * 109.46991 * 179.97438 * 29 27 24 31 31 F 1.39903 * 109.46545 * 299.99925 * 29 27 24 32 32 H 1.08998 * 109.47374 * 187.14357 * 1 2 3 33 33 H 1.08995 * 109.47438 * 67.14539 * 1 2 3 34 34 H 1.08999 * 109.46809 * 307.14536 * 1 2 3 35 35 H 1.00903 * 110.99809 * 322.42684 * 6 4 2 36 36 H 1.09001 * 109.47600 * 299.99812 * 7 6 4 37 37 H 1.08997 * 109.47541 * 60.00339 * 7 6 4 38 38 H 0.96997 * 120.00571 * 359.97438 * 10 8 7 39 39 H 0.97006 * 119.99876 * 180.02562 * 14 13 11 40 40 H 1.08999 * 111.00259 * 277.43188 * 19 4 2 41 41 H 1.08993 * 111.00704 * 153.57343 * 19 4 2 42 42 H 1.09009 * 110.36339 * 204.15303 * 20 19 4 43 43 H 1.08998 * 110.46463 * 81.87755 * 20 19 4 44 44 H 1.08997 * 117.50192 * 214.97716 * 26 24 22 45 45 H 1.09004 * 117.49881 * 359.97438 * 26 24 22 46 46 H 1.09001 * 109.47173 * 59.99381 * 29 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 6 2.0548 -0.7513 1.2415 5 1 2.9657 -0.2856 1.6178 6 7 1.0264 -0.8061 2.2892 7 6 1.6228 -1.1101 3.5968 8 6 0.5400 -1.1573 4.6439 9 8 -0.6149 -0.9578 4.3315 10 7 0.8549 -1.4211 5.9275 11 6 -0.1303 -1.4646 6.8800 12 1 -1.1586 -1.2870 6.6018 13 6 0.1944 -1.7371 8.2033 14 7 1.4455 -1.9537 8.5417 15 14 -1.1478 -1.7956 9.5012 16 1 -2.4619 -1.5199 8.8670 17 1 -1.1734 -3.1423 10.1266 18 1 -0.8752 -0.7719 10.5417 19 6 2.3518 -2.1706 0.6892 20 6 2.8567 -1.8487 -0.7395 21 7 2.0300 -0.7124 -1.1849 22 6 1.7753 -0.3809 -2.4663 23 8 1.0784 0.5795 -2.7172 24 6 2.3554 -1.2044 -3.5872 25 1 3.3446 -1.6224 -3.4002 26 6 1.3849 -2.0354 -4.4289 27 6 2.0279 -0.7780 -5.0197 28 1 1.3925 0.0977 -5.1514 29 6 3.1137 -0.9717 -6.0801 30 9 2.6389 -0.5300 -7.3197 31 9 4.2487 -0.2346 -5.7254 32 1 -0.3634 -1.0196 0.1278 33 1 -0.3634 0.3991 -0.9469 34 1 -0.3633 0.6205 0.8192 35 1 0.4989 0.0534 2.3233 36 1 2.1266 -2.0756 3.5509 37 1 2.3447 -0.3356 3.8559 38 1 1.7784 -1.5810 6.1774 39 1 1.6721 -2.1443 9.4655 40 1 1.4451 -2.7746 0.6563 41 1 3.1270 -2.6637 1.2756 42 1 2.7087 -2.7061 -1.3962 43 1 3.9093 -1.5663 -0.7171 44 1 1.7356 -2.9999 -4.7960 45 1 0.3268 -1.9868 -4.1716 46 1 3.3728 -2.0284 -6.1462 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178622323.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:07 Heat of formation + Delta-G solvation = -162.485879 kcal Electronic energy + Delta-G solvation = -29871.746504 eV Core-core repulsion = 25238.935756 eV Total energy + Delta-G solvation = -4632.810748 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -49.88652 -47.94100 -41.57768 -40.21370 -39.37439 -37.49978 -36.20027 -35.55980 -33.27131 -32.34084 -31.72005 -28.52702 -28.03797 -26.55559 -25.82700 -24.97332 -23.51045 -22.45476 -21.11239 -20.83245 -20.05638 -19.89178 -18.92196 -18.15926 -17.97979 -17.83113 -17.35061 -17.00330 -16.88351 -16.62803 -16.36370 -16.07486 -15.62325 -15.39050 -14.96602 -14.83712 -14.59648 -14.43899 -14.32503 -14.16396 -14.06057 -13.84262 -13.49847 -13.40909 -13.38060 -13.14526 -13.05242 -12.89920 -12.70598 -12.40792 -12.36632 -12.11987 -12.00720 -11.86818 -11.74384 -11.63886 -11.58595 -11.50442 -10.91675 -10.32990 -10.00197 -9.74206 -9.35467 -8.46360 -5.94551 1.34679 1.36743 1.42420 1.56025 1.74292 2.07055 2.29602 2.49452 2.76511 2.93381 3.21226 3.22383 3.37567 3.40441 3.51442 3.58573 3.67369 3.76598 3.96515 4.03336 4.21393 4.21924 4.26604 4.31251 4.31535 4.44772 4.52491 4.59926 4.63574 4.67160 4.70719 4.78294 4.87767 4.98635 5.00740 5.06602 5.26665 5.29688 5.39478 5.42236 5.89738 6.11050 6.31513 6.47711 6.61361 7.06436 7.14027 7.57983 8.13604 8.71084 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.038784 B = 0.001669 C = 0.001641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.766416 B =16772.784215 C =17061.360666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.137 3.863 3 H 0.066 0.934 4 C 0.079 3.921 5 H 0.076 0.924 6 N -0.667 5.667 7 C 0.066 3.934 8 C 0.437 3.563 9 O -0.625 6.625 10 N -0.573 5.573 11 C -0.333 4.333 12 H 0.077 0.923 13 C -0.012 4.012 14 N -0.919 5.919 15 Si 0.991 3.009 16 H -0.275 1.275 17 H -0.271 1.271 18 H -0.272 1.272 19 C -0.119 4.119 20 C 0.099 3.901 21 N -0.606 5.606 22 C 0.549 3.451 23 O -0.585 6.585 24 C -0.165 4.165 25 H 0.164 0.836 26 C -0.101 4.101 27 C -0.208 4.208 28 H 0.106 0.894 29 C 0.295 3.705 30 F -0.216 7.216 31 F -0.218 7.218 32 H 0.059 0.941 33 H 0.047 0.953 34 H 0.059 0.941 35 H 0.344 0.656 36 H 0.111 0.889 37 H 0.068 0.932 38 H 0.397 0.603 39 H 0.277 0.723 40 H 0.073 0.927 41 H 0.104 0.896 42 H 0.107 0.893 43 H 0.095 0.905 44 H 0.158 0.842 45 H 0.100 0.900 46 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.920 -4.877 -25.864 28.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.033 3.967 3 H 0.084 0.916 4 C -0.031 4.031 5 H 0.094 0.906 6 N -0.302 5.302 7 C -0.066 4.066 8 C 0.225 3.775 9 O -0.511 6.511 10 N -0.210 5.210 11 C -0.462 4.462 12 H 0.095 0.905 13 C -0.212 4.212 14 N -0.560 5.560 15 Si 0.815 3.185 16 H -0.200 1.200 17 H -0.196 1.196 18 H -0.197 1.197 19 C -0.158 4.158 20 C -0.023 4.023 21 N -0.338 5.338 22 C 0.339 3.661 23 O -0.466 6.466 24 C -0.186 4.186 25 H 0.181 0.819 26 C -0.138 4.138 27 C -0.227 4.227 28 H 0.124 0.876 29 C 0.242 3.758 30 F -0.197 7.197 31 F -0.199 7.199 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.165 0.835 36 H 0.129 0.871 37 H 0.086 0.914 38 H 0.231 0.769 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.123 0.877 42 H 0.126 0.874 43 H 0.113 0.887 44 H 0.176 0.824 45 H 0.118 0.882 46 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 9.720 -4.878 -26.226 28.391 hybrid contribution -0.045 1.481 1.325 1.988 sum 9.675 -3.396 -24.901 26.930 Atomic orbital electron populations 1.21836 0.95019 1.02418 1.00999 1.21507 0.94721 0.95509 0.84928 0.91622 1.22636 0.93382 0.97454 0.89643 0.90593 1.60336 1.24529 1.42176 1.03119 1.21578 0.93742 1.03577 0.87700 1.20924 0.90584 0.82197 0.83792 1.90505 1.23051 1.56056 1.81487 1.41923 1.10245 1.62545 1.06331 1.19681 0.90715 1.47302 0.88549 0.90483 1.25992 0.99398 0.96271 0.99507 1.69668 1.18010 1.48145 1.20161 0.84901 0.77742 0.78319 0.77561 1.19991 1.19575 1.19680 1.22883 1.02619 0.95376 0.94894 1.22664 0.95255 0.88681 0.95671 1.48466 1.50351 1.30987 1.04011 1.19819 0.79656 0.84036 0.82613 1.90697 1.40986 1.30941 1.83962 1.22242 1.03957 1.03966 0.88457 0.81894 1.23338 0.98649 0.95119 0.96695 1.23301 1.02521 1.03530 0.93364 0.87596 1.21784 0.79890 0.96153 0.77941 1.92969 1.88987 1.92141 1.45633 1.92982 1.53620 1.81286 1.92046 0.92234 0.93396 0.92165 0.83466 0.87084 0.91426 0.76883 0.91324 0.90832 0.87725 0.87445 0.88718 0.82393 0.88172 0.81797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.95 8.30 71.98 0.60 -3.35 16 2 C 0.14 3.12 3.41 45.34 0.15 3.28 16 3 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 4 C 0.08 1.61 3.10 46.10 0.14 1.75 16 5 H 0.08 1.34 7.93 -2.39 -0.02 1.32 16 6 N -0.67 -19.19 5.12 -489.43 -2.50 -21.70 16 7 C 0.07 2.06 6.02 85.56 0.52 2.57 16 8 C 0.44 20.03 7.82 87.66 0.69 20.72 16 9 O -0.62 -33.97 15.78 -3.07 -0.05 -34.02 16 10 N -0.57 -28.56 5.29 -306.98 -1.62 -30.18 16 11 C -0.33 -18.66 9.68 84.04 0.81 -17.85 16 12 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 13 C -0.01 -0.62 5.50 84.93 0.47 -0.16 16 14 N -0.92 -48.62 13.05 21.66 0.28 -48.34 16 15 Si 0.99 42.54 29.55 68.60 2.03 44.56 16 16 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 17 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 18 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 19 C -0.12 -1.80 6.64 31.99 0.21 -1.59 16 20 C 0.10 1.06 6.48 86.86 0.56 1.62 16 21 N -0.61 -11.37 3.08 -788.07 -2.43 -13.79 16 22 C 0.55 11.81 7.41 87.66 0.65 12.46 16 23 O -0.59 -18.19 15.07 -3.04 -0.05 -18.24 16 24 C -0.17 -1.95 4.93 -11.54 -0.06 -2.01 16 25 H 0.16 0.85 7.78 -2.39 -0.02 0.84 16 26 C -0.10 -0.75 9.88 30.62 0.30 -0.44 16 27 C -0.21 -2.71 5.41 -10.76 -0.06 -2.77 16 28 H 0.11 2.13 7.67 -2.39 -0.02 2.11 16 29 C 0.30 3.02 5.50 71.98 0.40 3.42 16 30 F -0.22 -3.42 17.34 44.97 0.78 -2.64 16 31 F -0.22 -3.45 17.29 44.97 0.78 -2.67 16 32 H 0.06 1.72 8.05 -2.39 -0.02 1.70 16 33 H 0.05 1.45 6.54 -2.39 -0.02 1.43 16 34 H 0.06 1.71 6.72 -2.39 -0.02 1.70 16 35 H 0.34 11.02 6.41 -89.69 -0.58 10.44 16 36 H 0.11 2.96 8.08 -2.39 -0.02 2.94 16 37 H 0.07 1.82 8.09 -2.39 -0.02 1.81 16 38 H 0.40 18.61 7.90 -92.71 -0.73 17.88 16 39 H 0.28 13.71 8.31 -92.70 -0.77 12.94 16 40 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.11 0.61 7.67 -2.38 -0.02 0.59 16 43 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.16 -0.18 8.05 -2.39 -0.02 -0.20 16 45 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.17 0.04 7.90 -2.39 -0.02 0.02 16 Total: -1.00 -77.92 387.91 2.33 -75.59 By element: Atomic # 1 Polarization: 34.05 SS G_CDS: -0.28 Total: 33.77 kcal Atomic # 6 Polarization: 12.27 SS G_CDS: 5.38 Total: 17.66 kcal Atomic # 7 Polarization: -107.74 SS G_CDS: -6.27 Total: -114.01 kcal Atomic # 8 Polarization: -52.16 SS G_CDS: -0.09 Total: -52.26 kcal Atomic # 9 Polarization: -6.87 SS G_CDS: 1.56 Total: -5.31 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.56 kcal Total: -77.92 2.33 -75.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178622323.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.895 kcal (2) G-P(sol) polarization free energy of solvation -77.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds