Wall clock time and date at job start Wed Apr 1 2020 03:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.99870 * 2 1 4 4 C 1.54323 * 109.88476 * 121.09570 * 2 1 3 5 5 H 1.08996 * 110.72112 * 215.76602 * 4 2 1 6 6 N 1.46901 * 110.72132 * 338.86329 * 4 2 1 7 7 C 1.46894 * 110.99880 * 204.99676 * 6 4 2 8 8 C 1.50696 * 109.47199 * 179.97438 * 7 6 4 9 9 O 1.21300 * 120.00199 * 0.02562 * 8 7 6 10 10 N 1.34776 * 120.00317 * 180.02562 * 8 7 6 11 11 C 1.37101 * 120.00139 * 180.02562 * 10 8 7 12 12 H 1.08000 * 119.99893 * 359.97438 * 11 10 8 13 13 C 1.38945 * 120.00187 * 180.02562 * 11 10 8 14 14 N 1.31414 * 119.99872 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00345 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.46820 * 59.99775 * 15 13 11 17 17 H 1.48494 * 109.47410 * 179.97438 * 15 13 11 18 18 H 1.48493 * 109.47043 * 299.99751 * 15 13 11 19 19 C 1.55157 * 102.93924 * 97.22657 * 4 2 1 20 20 C 1.54688 * 101.67843 * 35.33560 * 19 4 2 21 21 N 1.47018 * 109.88131 * 238.90635 * 2 1 3 22 22 C 1.34784 * 125.64722 * 59.48551 * 21 2 1 23 23 O 1.21279 * 119.99925 * 359.97438 * 22 21 2 24 24 C 1.50700 * 119.99961 * 180.02562 * 22 21 2 25 25 H 1.09009 * 112.84773 * 311.19815 * 24 22 21 26 26 C 1.53782 * 113.61507 * 82.49730 * 24 22 21 27 27 C 1.53779 * 87.07810 * 139.98162 * 26 24 22 28 28 C 1.53773 * 113.61589 * 180.02562 * 24 22 21 29 29 F 1.39904 * 113.61384 * 334.56677 * 28 24 22 30 30 F 1.39901 * 113.61474 * 105.46998 * 28 24 22 31 31 H 1.08997 * 109.46908 * 179.64529 * 1 2 3 32 32 H 1.08999 * 109.46888 * 299.64032 * 1 2 3 33 33 H 1.09000 * 109.47351 * 59.63768 * 1 2 3 34 34 H 1.00900 * 110.99788 * 81.03952 * 6 4 2 35 35 H 1.08998 * 109.47716 * 300.00115 * 7 6 4 36 36 H 1.09008 * 109.47367 * 59.99968 * 7 6 4 37 37 H 0.96997 * 119.99853 * 0.02562 * 10 8 7 38 38 H 0.96999 * 120.00215 * 180.02562 * 14 13 11 39 39 H 1.09002 * 111.00380 * 153.58019 * 19 4 2 40 40 H 1.09000 * 111.00315 * 277.39121 * 19 4 2 41 41 H 1.09006 * 110.39012 * 204.36803 * 20 19 4 42 42 H 1.08996 * 110.23808 * 82.11424 * 20 19 4 43 43 H 1.08995 * 113.61690 * 254.53076 * 26 24 22 44 44 H 1.09002 * 113.61008 * 25.44098 * 26 24 22 45 45 H 1.09005 * 113.61979 * 220.01828 * 27 26 24 46 46 H 1.09005 * 113.69336 * 89.12735 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7495 1.2427 5 1 2.9640 -0.2813 1.6200 6 7 1.0266 -0.8028 2.2904 7 6 1.6357 -0.9507 3.6189 8 6 0.5526 -1.0010 4.6654 9 8 -0.6124 -0.9219 4.3368 10 7 0.8782 -1.1338 5.9664 11 6 -0.1073 -1.1801 6.9185 12 1 -1.1445 -1.1096 6.6259 13 6 0.2284 -1.3165 8.2598 14 7 1.4905 -1.4017 8.6159 15 14 -1.1143 -1.3788 9.5571 16 1 -2.0063 -2.5359 9.2910 17 1 -0.4985 -1.5277 10.9001 18 1 -1.9054 -0.1230 9.5113 19 6 2.3520 -2.1694 0.6923 20 6 2.8523 -1.8529 -0.7368 21 7 2.0300 -0.7140 -1.1839 22 6 1.7741 -0.3851 -2.4657 23 8 1.0761 0.5740 -2.7179 24 6 2.3545 -1.2100 -3.5855 25 1 3.4222 -1.3944 -3.4659 26 6 1.5408 -2.4755 -3.9041 27 6 1.8119 -2.1807 -5.3888 28 6 1.9701 -0.7046 -4.9860 29 9 0.7707 0.0151 -5.0125 30 9 3.0125 -0.0505 -5.6514 31 1 -0.3633 -1.0276 -0.0064 32 1 -0.3633 0.5082 0.8932 33 1 -0.3634 0.5194 -0.8867 34 1 0.3657 -1.5439 2.1110 35 1 2.2163 -1.8726 3.6518 36 1 2.2907 -0.1017 3.8149 37 1 1.8098 -1.1967 6.2293 38 1 1.7249 -1.4973 9.5523 39 1 3.1271 -2.6618 1.2795 40 1 1.4454 -2.7738 0.6609 41 1 2.6997 -2.7111 -1.3914 42 1 3.9059 -1.5745 -0.7144 43 1 2.0065 -3.3949 -3.5493 44 1 0.4889 -2.3990 -3.6288 45 1 0.9541 -2.3678 -6.0349 46 1 2.7307 -2.6314 -5.7642 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178978643.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:00 Heat of formation + Delta-G solvation = -159.064119 kcal Electronic energy + Delta-G solvation = -30656.641605 eV Core-core repulsion = 26023.979236 eV Total energy + Delta-G solvation = -4632.662369 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -49.79025 -48.14690 -41.55781 -40.18973 -39.31134 -37.90465 -36.18201 -35.53260 -33.25941 -32.30148 -31.70847 -28.56888 -27.76981 -26.52852 -26.00985 -25.32201 -23.97583 -21.99730 -21.14762 -20.93582 -20.06937 -19.91787 -19.05871 -18.25936 -17.68107 -17.56889 -17.33220 -16.80254 -16.75064 -16.31484 -16.22614 -15.95546 -15.62037 -15.19954 -15.13008 -14.84947 -14.73702 -14.41584 -14.39747 -14.13660 -14.03313 -13.76289 -13.62500 -13.47969 -13.39335 -13.10948 -12.99459 -12.82784 -12.69145 -12.51315 -12.43621 -12.41304 -12.14532 -12.12164 -11.83258 -11.71634 -11.67475 -11.48760 -10.73658 -10.32023 -9.99646 -9.71137 -9.25218 -8.45477 -5.93674 1.40235 1.42440 1.45201 1.52744 1.76927 2.08316 2.30096 2.48047 2.74064 2.92758 3.20327 3.22417 3.28817 3.38879 3.44912 3.57979 3.70894 3.89397 4.07592 4.17145 4.30339 4.33775 4.36896 4.46154 4.47147 4.49478 4.54123 4.63358 4.64922 4.71731 4.74613 4.78107 4.88214 5.00700 5.09951 5.12609 5.14745 5.38299 5.39345 5.42228 5.91299 6.12594 6.38839 6.46926 6.62292 7.06601 7.14637 7.59023 8.14777 8.71480 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.034952 B = 0.001844 C = 0.001815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.905764 B =15179.250201 C =15420.823369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.143 3.857 3 H 0.061 0.939 4 C 0.086 3.914 5 H 0.109 0.891 6 N -0.671 5.671 7 C 0.068 3.932 8 C 0.437 3.563 9 O -0.625 6.625 10 N -0.573 5.573 11 C -0.333 4.333 12 H 0.077 0.923 13 C -0.012 4.012 14 N -0.919 5.919 15 Si 0.990 3.010 16 H -0.272 1.272 17 H -0.270 1.270 18 H -0.275 1.275 19 C -0.158 4.158 20 C 0.099 3.901 21 N -0.608 5.608 22 C 0.526 3.474 23 O -0.573 6.573 24 C -0.159 4.159 25 H 0.172 0.828 26 C -0.108 4.108 27 C -0.143 4.143 28 C 0.245 3.755 29 F -0.189 7.189 30 F -0.202 7.202 31 H 0.051 0.949 32 H 0.065 0.935 33 H 0.037 0.963 34 H 0.348 0.652 35 H 0.077 0.923 36 H 0.105 0.895 37 H 0.397 0.603 38 H 0.277 0.723 39 H 0.110 0.890 40 H 0.074 0.926 41 H 0.107 0.893 42 H 0.096 0.904 43 H 0.139 0.861 44 H 0.081 0.919 45 H 0.104 0.896 46 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.209 -8.332 -25.300 28.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.039 3.961 3 H 0.079 0.921 4 C -0.025 4.025 5 H 0.127 0.873 6 N -0.303 5.303 7 C -0.064 4.064 8 C 0.224 3.776 9 O -0.512 6.512 10 N -0.211 5.211 11 C -0.463 4.463 12 H 0.095 0.905 13 C -0.212 4.212 14 N -0.560 5.560 15 Si 0.814 3.186 16 H -0.197 1.197 17 H -0.195 1.195 18 H -0.200 1.200 19 C -0.197 4.197 20 C -0.023 4.023 21 N -0.342 5.342 22 C 0.315 3.685 23 O -0.452 6.452 24 C -0.180 4.180 25 H 0.189 0.811 26 C -0.146 4.146 27 C -0.180 4.180 28 C 0.209 3.791 29 F -0.169 7.169 30 F -0.183 7.183 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.056 0.944 34 H 0.169 0.831 35 H 0.095 0.905 36 H 0.123 0.877 37 H 0.231 0.769 38 H 0.087 0.913 39 H 0.128 0.872 40 H 0.093 0.907 41 H 0.126 0.874 42 H 0.114 0.886 43 H 0.157 0.843 44 H 0.099 0.901 45 H 0.123 0.877 46 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 10.082 -7.045 -25.477 28.290 hybrid contribution -0.289 -0.014 0.975 1.017 sum 9.793 -7.059 -24.502 27.315 Atomic orbital electron populations 1.21745 0.95382 1.01445 1.01104 1.21403 0.94495 0.95563 0.84616 0.92122 1.22617 0.94191 0.95995 0.89671 0.87280 1.59932 1.16397 1.54048 0.99943 1.21551 0.94106 1.03136 0.87588 1.20971 0.90692 0.82003 0.83910 1.90509 1.22402 1.56561 1.81692 1.41918 1.09499 1.64530 1.05124 1.19595 0.90001 1.49304 0.87371 0.90507 1.25993 0.99374 0.96398 0.99470 1.69654 1.17313 1.49871 1.19142 0.85027 0.77728 0.78839 0.76988 1.19672 1.19495 1.20012 1.23499 1.03309 0.96616 0.96290 1.22571 0.95545 0.88644 0.95533 1.48630 1.50501 1.30941 1.04088 1.20397 0.80463 0.84585 0.83056 1.90779 1.40056 1.30672 1.83721 1.24226 1.06061 0.97856 0.89874 0.81051 1.22812 1.00401 0.96591 0.94756 1.24121 1.07407 0.87660 0.98861 1.22671 0.73438 0.89088 0.93947 1.93047 1.45990 1.80966 1.96940 1.92987 1.57985 1.84810 1.82503 0.93018 0.91635 0.94416 0.83147 0.90512 0.87745 0.76873 0.91325 0.87202 0.90712 0.87440 0.88578 0.84314 0.90059 0.87716 0.83471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.01 8.26 71.98 0.59 -3.42 16 2 C 0.14 3.39 3.48 45.34 0.16 3.54 16 3 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 4 C 0.09 1.68 3.15 46.10 0.15 1.82 16 5 H 0.11 1.84 7.82 -2.39 -0.02 1.82 16 6 N -0.67 -18.83 4.41 -489.46 -2.16 -20.99 16 7 C 0.07 2.07 6.03 85.56 0.52 2.58 16 8 C 0.44 19.83 7.82 87.66 0.69 20.51 16 9 O -0.63 -33.83 15.78 -3.09 -0.05 -33.87 16 10 N -0.57 -28.44 5.29 -306.98 -1.62 -30.07 16 11 C -0.33 -18.62 9.68 84.04 0.81 -17.81 16 12 H 0.08 4.61 7.16 -2.91 -0.02 4.58 16 13 C -0.01 -0.66 5.50 84.92 0.47 -0.19 16 14 N -0.92 -48.63 13.05 21.66 0.28 -48.35 16 15 Si 0.99 42.54 29.55 68.60 2.03 44.57 16 16 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 17 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 18 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 19 C -0.16 -1.93 6.65 31.91 0.21 -1.71 16 20 C 0.10 0.89 6.65 86.78 0.58 1.47 16 21 N -0.61 -11.28 3.08 -788.49 -2.43 -13.71 16 22 C 0.53 11.85 7.11 87.66 0.62 12.48 16 23 O -0.57 -19.27 13.64 -3.03 -0.04 -19.31 16 24 C -0.16 -2.03 3.03 -11.02 -0.03 -2.07 16 25 H 0.17 0.97 8.10 -2.38 -0.02 0.95 16 26 C -0.11 -0.74 7.18 31.12 0.22 -0.52 16 27 C -0.14 -0.99 7.87 31.13 0.25 -0.74 16 28 C 0.25 4.34 3.02 31.13 0.09 4.44 16 29 F -0.19 -5.15 15.20 44.97 0.68 -4.46 16 30 F -0.20 -4.10 17.41 44.97 0.78 -3.32 16 31 H 0.05 1.42 7.95 -2.39 -0.02 1.40 16 32 H 0.06 2.17 7.44 -2.39 -0.02 2.15 16 33 H 0.04 1.24 6.74 -2.39 -0.02 1.22 16 34 H 0.35 10.46 7.43 -89.69 -0.67 9.79 16 35 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.10 2.86 8.08 -2.38 -0.02 2.84 16 37 H 0.40 18.52 7.90 -92.71 -0.73 17.78 16 38 H 0.28 13.79 8.31 -92.71 -0.77 13.02 16 39 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.07 1.05 7.77 -2.39 -0.02 1.04 16 41 H 0.11 0.37 7.21 -2.38 -0.02 0.35 16 42 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 43 H 0.14 -0.11 8.04 -2.39 -0.02 -0.13 16 44 H 0.08 0.92 8.09 -2.39 -0.02 0.90 16 45 H 0.10 0.67 8.14 -2.38 -0.02 0.65 16 46 H 0.15 0.12 8.14 -2.38 -0.02 0.10 16 Total: -1.00 -80.31 381.05 2.43 -77.89 By element: Atomic # 1 Polarization: 31.61 SS G_CDS: -0.37 Total: 31.24 kcal Atomic # 6 Polarization: 15.07 SS G_CDS: 5.32 Total: 20.39 kcal Atomic # 7 Polarization: -107.19 SS G_CDS: -5.93 Total: -113.12 kcal Atomic # 8 Polarization: -53.10 SS G_CDS: -0.09 Total: -53.19 kcal Atomic # 9 Polarization: -9.25 SS G_CDS: 1.47 Total: -7.78 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -80.31 2.43 -77.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178978643.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.177 kcal (2) G-P(sol) polarization free energy of solvation -80.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds