Wall clock time and date at job start Wed Apr 1 2020 03:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.99700 * 2 1 4 4 C 1.54333 * 109.77392 * 121.16367 * 2 1 3 5 5 H 1.09008 * 110.66433 * 215.87739 * 4 2 1 6 6 N 1.46904 * 110.85225 * 339.02772 * 4 2 1 7 7 C 1.46897 * 110.99815 * 200.14875 * 6 4 2 8 8 C 1.50697 * 109.47141 * 179.97438 * 7 6 4 9 9 O 1.21292 * 120.00069 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00506 * 179.97438 * 8 7 6 11 11 C 1.37097 * 120.00293 * 180.02562 * 10 8 7 12 12 H 1.08000 * 120.00048 * 359.97438 * 11 10 8 13 13 C 1.38957 * 119.99869 * 180.02562 * 11 10 8 14 14 N 1.31405 * 119.99673 * 179.97438 * 13 11 10 15 15 Si 1.86798 * 119.99843 * 359.97438 * 13 11 10 16 16 H 1.48491 * 109.47366 * 90.00710 * 15 13 11 17 17 H 1.48505 * 109.46832 * 210.00331 * 15 13 11 18 18 H 1.48496 * 109.47189 * 329.99999 * 15 13 11 19 19 C 1.55156 * 103.02135 * 97.49766 * 4 2 1 20 20 C 1.54911 * 101.58155 * 35.30495 * 19 4 2 21 21 N 1.47025 * 109.88250 * 238.89805 * 2 1 3 22 22 C 1.34781 * 125.64302 * 59.56518 * 21 2 1 23 23 O 1.21282 * 120.00272 * 359.71162 * 22 21 2 24 24 C 1.50698 * 119.99596 * 179.71537 * 22 21 2 25 25 H 1.08998 * 112.91214 * 48.74323 * 24 22 21 26 26 C 1.54056 * 113.69449 * 277.42242 * 24 22 21 27 27 C 1.53781 * 87.07778 * 220.05391 * 26 24 22 28 28 C 1.53780 * 113.61520 * 180.02562 * 24 22 21 29 29 F 1.39905 * 113.61457 * 25.42768 * 28 24 22 30 30 F 1.39901 * 113.61352 * 254.61426 * 28 24 22 31 31 H 1.09003 * 109.47631 * 179.64260 * 1 2 3 32 32 H 1.08992 * 109.47654 * 299.64546 * 1 2 3 33 33 H 1.08999 * 109.47148 * 59.64748 * 1 2 3 34 34 H 1.00891 * 111.00006 * 324.09907 * 6 4 2 35 35 H 1.08998 * 109.47113 * 300.00058 * 7 6 4 36 36 H 1.09008 * 109.47375 * 60.00130 * 7 6 4 37 37 H 0.97000 * 119.99564 * 0.02562 * 10 8 7 38 38 H 0.96997 * 120.00139 * 180.02562 * 14 13 11 39 39 H 1.09000 * 111.00611 * 277.22558 * 19 4 2 40 40 H 1.09006 * 111.00371 * 153.37726 * 19 4 2 41 41 H 1.09003 * 110.36099 * 204.15296 * 20 19 4 42 42 H 1.08998 * 110.36379 * 81.83179 * 20 19 4 43 43 H 1.08997 * 113.62458 * 105.50271 * 26 24 22 44 44 H 1.08998 * 113.61049 * 334.59749 * 26 24 22 45 45 H 1.09001 * 113.61537 * 270.88169 * 27 26 24 46 46 H 1.08998 * 113.61680 * 139.97323 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0521 -0.7516 1.2427 5 1 2.9600 -0.2827 1.6226 6 7 1.0228 -0.8102 2.2892 7 6 1.6228 -1.0755 3.6035 8 6 0.5389 -1.1278 4.6492 9 8 -0.6195 -0.9610 4.3308 10 7 0.8565 -1.3610 5.9381 11 6 -0.1297 -1.4091 6.8892 12 1 -1.1610 -1.2597 6.6058 13 6 0.1980 -1.6490 8.2182 14 7 -0.7472 -1.6946 9.1299 15 14 1.9820 -1.9066 8.7084 16 1 2.5946 -0.5984 9.0525 17 1 2.0462 -2.8083 9.8866 18 1 2.7231 -2.5179 7.5762 19 6 2.3560 -2.1697 0.6916 20 6 2.8613 -1.8466 -0.7367 21 7 2.0300 -0.7142 -1.1839 22 6 1.7754 -0.3846 -2.4657 23 8 1.0747 0.5726 -2.7180 24 6 2.3613 -1.2055 -3.5854 25 1 2.2094 -2.2765 -3.4508 26 6 3.8130 -0.8276 -3.9361 27 6 3.4215 -1.0126 -5.4117 28 6 1.9777 -0.6998 -4.9861 29 9 1.6652 0.6634 -5.0235 30 9 1.0204 -1.4943 -5.6260 31 1 -0.3634 -1.0276 -0.0064 32 1 -0.3634 0.5083 0.8930 33 1 -0.3633 0.5193 -0.8868 34 1 0.4756 0.0373 2.3060 35 1 2.1488 -2.0298 3.5768 36 1 2.3260 -0.2797 3.8493 37 1 1.7829 -1.4947 6.1927 38 1 -0.5186 -1.8616 10.0576 39 1 1.4521 -2.7779 0.6580 40 1 3.1327 -2.6592 1.2793 41 1 2.7177 -2.7050 -1.3930 42 1 3.9123 -1.5590 -0.7113 43 1 4.5495 -1.5507 -3.5857 44 1 4.0711 0.1996 -3.6784 45 1 3.5589 -2.0309 -5.7755 46 1 3.8530 -0.2632 -6.0752 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178978644.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:04 Heat of formation + Delta-G solvation = -124.301432 kcal Electronic energy + Delta-G solvation = -30671.756973 eV Core-core repulsion = 26040.602027 eV Total energy + Delta-G solvation = -4631.154946 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.07476 -47.39052 -40.77440 -38.95667 -38.20932 -37.18081 -34.91782 -33.89189 -31.73984 -31.46031 -30.87861 -27.75073 -26.74607 -25.53848 -25.30775 -23.71737 -23.38573 -21.17960 -20.11133 -19.51753 -19.35129 -18.43127 -18.31862 -17.54074 -16.85514 -16.47154 -16.31689 -15.99676 -15.74976 -15.43418 -15.08617 -14.80395 -14.38233 -14.21611 -14.06529 -13.97055 -13.62321 -13.57435 -13.49493 -13.26880 -13.22683 -12.68083 -12.58191 -12.36047 -12.30615 -12.09597 -12.05744 -11.93553 -11.74103 -11.63782 -11.52965 -11.24224 -11.17449 -11.00345 -10.76980 -10.62673 -10.00511 -9.92331 -9.60409 -8.95483 -8.63961 -8.27937 -8.20228 -6.33600 -3.85245 2.19680 2.48898 2.99321 3.03633 3.04309 3.12415 3.24121 3.70129 3.75457 3.78136 3.85523 3.96685 4.07534 4.14471 4.32921 4.44815 4.70759 4.75586 4.87564 4.89016 4.90714 4.94093 5.02187 5.08951 5.11993 5.16595 5.20946 5.37808 5.41074 5.49650 5.54880 5.59063 5.71081 5.76066 5.86210 5.98016 6.04323 6.17388 6.43175 7.00135 7.17909 7.45593 7.55127 7.83440 8.11677 8.56597 8.92263 9.39384 9.79172 10.79482 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.031871 B = 0.001933 C = 0.001874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.339096 B =14481.756155 C =14937.199921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.137 3.863 3 H 0.075 0.925 4 C 0.077 3.923 5 H 0.059 0.941 6 N -0.655 5.655 7 C 0.047 3.953 8 C 0.449 3.551 9 O -0.564 6.564 10 N -0.590 5.590 11 C -0.305 4.305 12 H 0.120 0.880 13 C 0.041 3.959 14 N -0.880 5.880 15 Si 0.880 3.120 16 H -0.271 1.271 17 H -0.276 1.276 18 H -0.269 1.269 19 C -0.123 4.123 20 C 0.097 3.903 21 N -0.607 5.607 22 C 0.537 3.463 23 O -0.517 6.517 24 C -0.166 4.166 25 H 0.139 0.861 26 C -0.117 4.117 27 C -0.164 4.164 28 C 0.280 3.720 29 F -0.158 7.158 30 F -0.189 7.189 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.356 0.644 35 H 0.088 0.912 36 H 0.046 0.954 37 H 0.370 0.630 38 H 0.273 0.727 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.077 0.923 42 H 0.071 0.929 43 H 0.099 0.901 44 H 0.098 0.902 45 H 0.116 0.884 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.887 -1.410 -26.523 31.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.034 3.966 3 H 0.093 0.907 4 C -0.034 4.034 5 H 0.077 0.923 6 N -0.290 5.290 7 C -0.086 4.086 8 C 0.235 3.765 9 O -0.445 6.445 10 N -0.229 5.229 11 C -0.434 4.434 12 H 0.137 0.863 13 C -0.162 4.162 14 N -0.520 5.520 15 Si 0.707 3.293 16 H -0.197 1.197 17 H -0.202 1.202 18 H -0.195 1.195 19 C -0.162 4.162 20 C -0.026 4.026 21 N -0.342 5.342 22 C 0.324 3.676 23 O -0.392 6.392 24 C -0.188 4.188 25 H 0.157 0.843 26 C -0.155 4.155 27 C -0.202 4.202 28 C 0.243 3.757 29 F -0.139 7.139 30 F -0.169 7.169 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.179 0.821 35 H 0.106 0.894 36 H 0.064 0.936 37 H 0.203 0.797 38 H 0.084 0.916 39 H 0.110 0.890 40 H 0.101 0.899 41 H 0.096 0.904 42 H 0.089 0.911 43 H 0.118 0.882 44 H 0.117 0.883 45 H 0.134 0.866 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 15.413 -1.393 -26.845 30.986 hybrid contribution 1.666 0.491 0.891 1.952 sum 17.079 -0.903 -25.953 31.082 Atomic orbital electron populations 1.22003 0.93335 1.03484 1.02582 1.21632 0.96131 0.95286 0.83585 0.90707 1.22557 0.93962 0.95722 0.91194 0.92320 1.60343 1.21961 1.44259 1.02471 1.21764 0.95971 1.01544 0.89303 1.19671 0.89797 0.84199 0.82862 1.90578 1.20196 1.53424 1.80329 1.42201 1.08723 1.65005 1.07015 1.19432 0.91279 1.46350 0.86335 0.86268 1.25052 0.97981 0.97648 0.95545 1.69618 1.32140 1.48322 1.01949 0.86660 0.84607 0.78943 0.79089 1.19677 1.20170 1.19496 1.22886 1.02620 0.97183 0.93512 1.22418 0.94732 0.88904 0.96518 1.48469 1.50413 1.30657 1.04685 1.19603 0.81000 0.85011 0.81961 1.90801 1.37356 1.28216 1.82814 1.24090 0.98639 1.03280 0.92835 0.84297 1.22806 0.93759 1.04140 0.94786 1.24064 0.91915 1.05501 0.98742 1.21746 0.86688 0.74911 0.92354 1.93113 1.93941 1.30128 1.96684 1.93029 1.67755 1.72937 1.83226 0.91456 0.90918 0.91654 0.82092 0.89418 0.93636 0.79715 0.91590 0.89038 0.89874 0.90444 0.91081 0.88241 0.88303 0.86567 0.88170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.03 8.38 37.16 0.31 -1.72 16 2 C 0.14 1.51 3.42 -66.95 -0.23 1.28 16 3 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 4 C 0.08 0.79 3.10 -65.87 -0.20 0.59 16 5 H 0.06 0.55 7.90 -51.92 -0.41 0.14 16 6 N -0.65 -9.22 5.22 -106.05 -0.55 -9.77 16 7 C 0.05 0.71 6.02 -4.98 -0.03 0.68 16 8 C 0.45 9.81 7.82 -10.99 -0.09 9.72 16 9 O -0.56 -14.77 15.78 5.55 0.09 -14.68 16 10 N -0.59 -13.66 5.09 -10.96 -0.06 -13.71 16 11 C -0.31 -8.51 10.16 -14.93 -0.15 -8.66 16 12 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 13 C 0.04 1.10 5.50 -17.47 -0.10 1.01 16 14 N -0.88 -25.50 13.96 55.50 0.77 -24.72 16 15 Si 0.88 18.96 27.74 -169.99 -4.71 14.25 16 16 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 17 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 18 H -0.27 -5.23 6.52 56.52 0.37 -4.86 16 19 C -0.12 -1.04 6.71 -24.58 -0.17 -1.20 16 20 C 0.10 0.63 6.69 -2.53 -0.02 0.62 16 21 N -0.61 -5.88 3.08 -163.01 -0.50 -6.38 16 22 C 0.54 5.96 7.12 -10.98 -0.08 5.89 16 23 O -0.52 -7.93 13.64 5.56 0.08 -7.86 16 24 C -0.17 -1.22 3.21 -90.82 -0.29 -1.51 16 25 H 0.14 0.70 7.47 -51.93 -0.39 0.32 16 26 C -0.12 -0.51 7.62 -25.77 -0.20 -0.71 16 27 C -0.16 -0.74 7.87 -25.94 -0.20 -0.94 16 28 C 0.28 2.52 3.01 -25.94 -0.08 2.44 16 29 F -0.16 -1.97 15.20 2.25 0.03 -1.94 16 30 F -0.19 -1.98 17.41 2.25 0.04 -1.94 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.07 0.96 6.27 -51.93 -0.33 0.64 16 33 H 0.06 0.94 6.74 -51.93 -0.35 0.59 16 34 H 0.36 5.38 6.14 -39.30 -0.24 5.14 16 35 H 0.09 1.17 8.13 -51.93 -0.42 0.75 16 36 H 0.05 0.60 8.09 -51.92 -0.42 0.18 16 37 H 0.37 7.45 5.76 -40.82 -0.24 7.22 16 38 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 39 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.08 0.36 7.24 -51.93 -0.38 -0.01 16 42 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.10 0.18 8.14 -51.93 -0.42 -0.24 16 44 H 0.10 0.53 8.10 -51.93 -0.42 0.11 16 45 H 0.12 0.29 8.14 -51.93 -0.42 -0.13 16 46 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 377.15 15.07 5.68 5.68 Total: -1.00 -35.63 377.15 -7.17 -42.81 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -6.53 Total: 10.79 kcal Atomic # 6 Polarization: 9.00 SS G_CDS: -1.52 Total: 7.48 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: -0.34 Total: -54.59 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: 0.16 Total: -22.53 kcal Atomic # 9 Polarization: -3.95 SS G_CDS: 0.07 Total: -3.88 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -4.71 Total: 14.25 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.63 -7.17 -42.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178978644.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.496 kcal (2) G-P(sol) polarization free energy of solvation -35.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds