Wall clock time and date at job start Wed Apr 1 2020 03:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.99700 * 2 1 4 4 C 1.54333 * 109.77392 * 121.16367 * 2 1 3 5 5 H 1.09008 * 110.66433 * 215.87739 * 4 2 1 6 6 N 1.46904 * 110.85225 * 339.02772 * 4 2 1 7 7 C 1.46897 * 110.99815 * 200.14875 * 6 4 2 8 8 C 1.50697 * 109.47141 * 179.97438 * 7 6 4 9 9 O 1.21292 * 120.00069 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00506 * 179.97438 * 8 7 6 11 11 C 1.37097 * 120.00293 * 180.02562 * 10 8 7 12 12 H 1.08000 * 120.00048 * 359.97438 * 11 10 8 13 13 C 1.38957 * 119.99869 * 180.02562 * 11 10 8 14 14 N 1.31405 * 119.99673 * 179.97438 * 13 11 10 15 15 Si 1.86798 * 119.99843 * 359.97438 * 13 11 10 16 16 H 1.48491 * 109.47366 * 90.00710 * 15 13 11 17 17 H 1.48505 * 109.46832 * 210.00331 * 15 13 11 18 18 H 1.48496 * 109.47189 * 329.99999 * 15 13 11 19 19 C 1.55156 * 103.02135 * 97.49766 * 4 2 1 20 20 C 1.54911 * 101.58155 * 35.30495 * 19 4 2 21 21 N 1.47025 * 109.88250 * 238.89805 * 2 1 3 22 22 C 1.34781 * 125.64302 * 59.56518 * 21 2 1 23 23 O 1.21282 * 120.00272 * 359.71162 * 22 21 2 24 24 C 1.50698 * 119.99596 * 179.71537 * 22 21 2 25 25 H 1.08998 * 112.91214 * 48.74323 * 24 22 21 26 26 C 1.54056 * 113.69449 * 277.42242 * 24 22 21 27 27 C 1.53781 * 87.07778 * 220.05391 * 26 24 22 28 28 C 1.53780 * 113.61520 * 180.02562 * 24 22 21 29 29 F 1.39905 * 113.61457 * 25.42768 * 28 24 22 30 30 F 1.39901 * 113.61352 * 254.61426 * 28 24 22 31 31 H 1.09003 * 109.47631 * 179.64260 * 1 2 3 32 32 H 1.08992 * 109.47654 * 299.64546 * 1 2 3 33 33 H 1.08999 * 109.47148 * 59.64748 * 1 2 3 34 34 H 1.00891 * 111.00006 * 324.09907 * 6 4 2 35 35 H 1.08998 * 109.47113 * 300.00058 * 7 6 4 36 36 H 1.09008 * 109.47375 * 60.00130 * 7 6 4 37 37 H 0.97000 * 119.99564 * 0.02562 * 10 8 7 38 38 H 0.96997 * 120.00139 * 180.02562 * 14 13 11 39 39 H 1.09000 * 111.00611 * 277.22558 * 19 4 2 40 40 H 1.09006 * 111.00371 * 153.37726 * 19 4 2 41 41 H 1.09003 * 110.36099 * 204.15296 * 20 19 4 42 42 H 1.08998 * 110.36379 * 81.83179 * 20 19 4 43 43 H 1.08997 * 113.62458 * 105.50271 * 26 24 22 44 44 H 1.08998 * 113.61049 * 334.59749 * 26 24 22 45 45 H 1.09001 * 113.61537 * 270.88169 * 27 26 24 46 46 H 1.08998 * 113.61680 * 139.97323 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0521 -0.7516 1.2427 5 1 2.9600 -0.2827 1.6226 6 7 1.0228 -0.8102 2.2892 7 6 1.6228 -1.0755 3.6035 8 6 0.5389 -1.1278 4.6492 9 8 -0.6195 -0.9610 4.3308 10 7 0.8565 -1.3610 5.9381 11 6 -0.1297 -1.4091 6.8892 12 1 -1.1610 -1.2597 6.6058 13 6 0.1980 -1.6490 8.2182 14 7 -0.7472 -1.6946 9.1299 15 14 1.9820 -1.9066 8.7084 16 1 2.5946 -0.5984 9.0525 17 1 2.0462 -2.8083 9.8866 18 1 2.7231 -2.5179 7.5762 19 6 2.3560 -2.1697 0.6916 20 6 2.8613 -1.8466 -0.7367 21 7 2.0300 -0.7142 -1.1839 22 6 1.7754 -0.3846 -2.4657 23 8 1.0747 0.5726 -2.7180 24 6 2.3613 -1.2055 -3.5854 25 1 2.2094 -2.2765 -3.4508 26 6 3.8130 -0.8276 -3.9361 27 6 3.4215 -1.0126 -5.4117 28 6 1.9777 -0.6998 -4.9861 29 9 1.6652 0.6634 -5.0235 30 9 1.0204 -1.4943 -5.6260 31 1 -0.3634 -1.0276 -0.0064 32 1 -0.3634 0.5083 0.8930 33 1 -0.3633 0.5193 -0.8868 34 1 0.4756 0.0373 2.3060 35 1 2.1488 -2.0298 3.5768 36 1 2.3260 -0.2797 3.8493 37 1 1.7829 -1.4947 6.1927 38 1 -0.5186 -1.8616 10.0576 39 1 1.4521 -2.7779 0.6580 40 1 3.1327 -2.6592 1.2793 41 1 2.7177 -2.7050 -1.3930 42 1 3.9123 -1.5590 -0.7113 43 1 4.5495 -1.5507 -3.5857 44 1 4.0711 0.1996 -3.6784 45 1 3.5589 -2.0309 -5.7755 46 1 3.8530 -0.2632 -6.0752 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178978644.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:03 Heat of formation + Delta-G solvation = -151.892258 kcal Electronic energy + Delta-G solvation = -30672.953401 eV Core-core repulsion = 26040.602027 eV Total energy + Delta-G solvation = -4632.351374 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -49.78972 -48.14439 -41.55352 -40.32027 -39.33132 -37.88145 -36.22857 -35.59530 -33.74239 -32.39092 -31.76009 -28.67144 -27.83781 -26.50701 -25.97867 -25.20634 -24.07805 -21.77981 -21.27484 -20.81028 -20.35103 -20.14624 -18.99520 -18.23655 -17.76330 -17.60469 -17.15274 -17.00771 -16.91153 -16.49855 -16.47488 -15.83505 -15.51250 -15.15550 -15.01109 -14.78588 -14.70254 -14.56803 -14.43747 -14.39513 -14.26933 -14.01576 -13.81972 -13.48092 -13.29839 -13.18167 -12.91112 -12.76874 -12.66335 -12.42250 -12.40673 -12.38284 -12.13746 -11.95996 -11.87640 -11.67486 -11.61585 -11.49696 -10.76052 -10.41531 -10.23942 -9.73275 -9.34498 -8.40049 -6.01341 1.31435 1.37640 1.43987 1.46750 1.76687 1.98153 2.24885 2.48208 2.73856 2.75782 3.16553 3.17707 3.28947 3.39056 3.41228 3.49757 3.67955 3.81962 4.03447 4.16665 4.27124 4.29523 4.34567 4.44850 4.47132 4.48577 4.51919 4.58566 4.63129 4.70125 4.73835 4.78485 4.89961 4.99456 5.06827 5.16418 5.27300 5.28498 5.39642 5.54264 5.91822 6.06609 6.30580 6.45667 6.61025 6.89765 7.05053 7.41422 7.98963 8.77742 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.031871 B = 0.001933 C = 0.001874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.339096 B =14481.756155 C =14937.199921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.137 3.863 3 H 0.070 0.930 4 C 0.081 3.919 5 H 0.086 0.914 6 N -0.675 5.675 7 C 0.063 3.937 8 C 0.447 3.553 9 O -0.617 6.617 10 N -0.590 5.590 11 C -0.329 4.329 12 H 0.052 0.948 13 C -0.019 4.019 14 N -0.936 5.936 15 Si 0.968 3.032 16 H -0.258 1.258 17 H -0.277 1.277 18 H -0.226 1.226 19 C -0.121 4.121 20 C 0.097 3.903 21 N -0.605 5.605 22 C 0.527 3.473 23 O -0.574 6.574 24 C -0.161 4.161 25 H 0.168 0.832 26 C -0.102 4.102 27 C -0.144 4.144 28 C 0.243 3.757 29 F -0.188 7.188 30 F -0.205 7.205 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.042 0.958 34 H 0.345 0.655 35 H 0.121 0.879 36 H 0.081 0.919 37 H 0.391 0.609 38 H 0.279 0.721 39 H 0.067 0.933 40 H 0.110 0.890 41 H 0.103 0.897 42 H 0.105 0.895 43 H 0.141 0.859 44 H 0.086 0.914 45 H 0.145 0.855 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.954 -3.416 -27.447 35.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.033 3.967 3 H 0.088 0.912 4 C -0.029 4.029 5 H 0.104 0.896 6 N -0.310 5.310 7 C -0.069 4.069 8 C 0.235 3.765 9 O -0.501 6.501 10 N -0.232 5.232 11 C -0.458 4.458 12 H 0.070 0.930 13 C -0.217 4.217 14 N -0.577 5.577 15 Si 0.788 3.212 16 H -0.182 1.182 17 H -0.202 1.202 18 H -0.149 1.149 19 C -0.160 4.160 20 C -0.024 4.024 21 N -0.339 5.339 22 C 0.316 3.684 23 O -0.453 6.453 24 C -0.183 4.183 25 H 0.185 0.815 26 C -0.140 4.140 27 C -0.181 4.181 28 C 0.207 3.793 29 F -0.169 7.169 30 F -0.186 7.186 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.061 0.939 34 H 0.166 0.834 35 H 0.139 0.861 36 H 0.099 0.901 37 H 0.227 0.773 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.129 0.871 41 H 0.121 0.879 42 H 0.123 0.877 43 H 0.159 0.841 44 H 0.105 0.895 45 H 0.163 0.837 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 21.530 -3.434 -27.794 35.325 hybrid contribution -0.433 1.158 1.119 1.667 sum 21.097 -2.276 -26.675 34.086 Atomic orbital electron populations 1.21858 0.95691 1.01920 1.00974 1.21532 0.94205 0.95817 0.85188 0.91180 1.22646 0.93485 0.97363 0.89366 0.89636 1.60355 1.23608 1.44110 1.02969 1.21688 0.93451 1.04539 0.87207 1.21071 0.90805 0.81124 0.83498 1.90561 1.23387 1.54882 1.81313 1.42011 1.08633 1.65801 1.06766 1.18989 0.89955 1.48480 0.88375 0.92985 1.26189 1.04726 0.96229 0.94586 1.69814 1.35788 1.49435 1.02674 0.85320 0.76578 0.79585 0.79732 1.18228 1.20241 1.14899 1.22913 1.02573 0.95430 0.95040 1.22724 0.95599 0.88517 0.95569 1.48556 1.50245 1.31196 1.03874 1.20378 0.80272 0.84730 0.83039 1.90778 1.39917 1.30865 1.83729 1.24278 1.00313 1.03842 0.89857 0.81510 1.22857 0.92335 1.04601 0.94161 1.24111 0.87546 1.07232 0.99251 1.22740 0.88600 0.73549 0.94452 1.93042 1.94365 1.32550 1.96945 1.92987 1.68810 1.73132 1.83659 0.92846 0.91883 0.93885 0.83372 0.86121 0.90120 0.77342 0.91197 0.91388 0.87135 0.87924 0.87729 0.84126 0.89539 0.83728 0.87541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.06 8.38 71.98 0.60 -3.45 16 2 C 0.14 2.90 3.42 45.34 0.16 3.06 16 3 H 0.07 1.55 8.14 -2.39 -0.02 1.54 16 4 C 0.08 1.43 3.10 46.11 0.14 1.57 16 5 H 0.09 1.13 7.90 -2.38 -0.02 1.11 16 6 N -0.68 -17.97 5.22 -489.42 -2.55 -20.53 16 7 C 0.06 1.70 6.02 85.56 0.52 2.22 16 8 C 0.45 19.37 7.82 87.66 0.69 20.05 16 9 O -0.62 -33.80 15.78 -3.07 -0.05 -33.85 16 10 N -0.59 -26.88 5.09 -306.98 -1.56 -28.45 16 11 C -0.33 -19.06 10.16 84.04 0.85 -18.21 16 12 H 0.05 3.63 7.39 -2.91 -0.02 3.61 16 13 C -0.02 -1.04 5.50 84.93 0.47 -0.58 16 14 N -0.94 -56.33 13.96 21.66 0.30 -56.02 16 15 Si 0.97 37.65 27.74 68.60 1.90 39.55 16 16 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 17 H -0.28 -10.80 7.11 99.48 0.71 -10.09 16 18 H -0.23 -7.15 6.52 99.48 0.65 -6.50 16 19 C -0.12 -1.52 6.71 31.99 0.21 -1.31 16 20 C 0.10 0.79 6.69 86.86 0.58 1.37 16 21 N -0.61 -10.49 3.08 -788.04 -2.43 -12.92 16 22 C 0.53 11.32 7.12 87.66 0.62 11.94 16 23 O -0.57 -18.56 13.64 -3.03 -0.04 -18.60 16 24 C -0.16 -1.96 3.21 -10.92 -0.04 -2.00 16 25 H 0.17 1.02 7.47 -2.39 -0.02 1.00 16 26 C -0.10 -0.48 7.62 31.21 0.24 -0.24 16 27 C -0.14 -0.83 7.87 31.11 0.24 -0.58 16 28 C 0.24 4.19 3.01 31.11 0.09 4.28 16 29 F -0.19 -4.94 15.20 44.97 0.68 -4.25 16 30 F -0.20 -4.29 17.41 44.97 0.78 -3.50 16 31 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.06 1.82 6.27 -2.39 -0.01 1.81 16 33 H 0.04 1.36 6.74 -2.39 -0.02 1.35 16 34 H 0.34 10.50 6.14 -89.70 -0.55 9.95 16 35 H 0.12 2.55 8.13 -2.39 -0.02 2.53 16 36 H 0.08 1.69 8.09 -2.38 -0.02 1.67 16 37 H 0.39 14.37 5.76 -92.71 -0.53 13.83 16 38 H 0.28 15.29 8.31 -92.71 -0.77 14.52 16 39 H 0.07 1.21 8.14 -2.39 -0.02 1.20 16 40 H 0.11 0.85 8.14 -2.38 -0.02 0.83 16 41 H 0.10 0.38 7.24 -2.39 -0.02 0.37 16 42 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 43 H 0.14 -0.43 8.14 -2.39 -0.02 -0.45 16 44 H 0.09 0.68 8.10 -2.39 -0.02 0.66 16 45 H 0.14 0.04 8.14 -2.39 -0.02 0.02 16 46 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 Total: -1.00 -90.27 377.15 2.31 -87.96 By element: Atomic # 1 Polarization: 32.58 SS G_CDS: -0.11 Total: 32.47 kcal Atomic # 6 Polarization: 12.75 SS G_CDS: 5.38 Total: 18.13 kcal Atomic # 7 Polarization: -111.67 SS G_CDS: -6.24 Total: -117.91 kcal Atomic # 8 Polarization: -52.35 SS G_CDS: -0.09 Total: -52.44 kcal Atomic # 9 Polarization: -9.22 SS G_CDS: 1.47 Total: -7.76 kcal Atomic # 14 Polarization: 37.65 SS G_CDS: 1.90 Total: 39.55 kcal Total: -90.27 2.31 -87.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178978644.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.932 kcal (2) G-P(sol) polarization free energy of solvation -90.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds