Wall clock time and date at job start Wed Apr 1 2020 03:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 110.78604 * 2 1 4 4 C 1.54943 * 110.72251 * 236.75074 * 2 1 3 5 5 N 1.48536 * 103.22546 * 204.23108 * 4 2 1 6 6 C 1.46897 * 111.00233 * 159.71913 * 5 4 2 7 7 C 1.50690 * 109.47609 * 189.99892 * 6 5 4 8 8 O 1.21298 * 119.99778 * 0.02562 * 7 6 5 9 9 N 1.34775 * 120.00479 * 180.02562 * 7 6 5 10 10 C 1.37101 * 120.00314 * 179.97438 * 9 7 6 11 11 H 1.08003 * 120.00017 * 0.02562 * 10 9 7 12 12 C 1.38952 * 119.99767 * 179.97438 * 10 9 7 13 13 N 1.31418 * 119.99524 * 180.02562 * 12 10 9 14 14 Si 1.86800 * 120.00239 * 0.02562 * 12 10 9 15 15 H 1.48496 * 109.46756 * 89.99859 * 14 12 10 16 16 H 1.48498 * 109.46792 * 209.99686 * 14 12 10 17 17 H 1.48494 * 109.47072 * 329.99793 * 14 12 10 18 18 C 1.47904 * 105.81996 * 39.20665 * 5 4 2 19 19 C 1.53995 * 107.05860 * 334.67128 * 18 5 4 20 20 H 1.08998 * 110.39363 * 120.18887 * 19 18 5 21 21 N 1.46502 * 110.30561 * 242.30816 * 19 18 5 22 22 C 1.34778 * 120.00212 * 270.71519 * 21 19 18 23 23 O 1.21280 * 119.99636 * 0.02562 * 22 21 19 24 24 C 1.50697 * 120.00145 * 180.02562 * 22 21 19 25 25 H 1.09002 * 115.54932 * 325.58291 * 24 22 21 26 26 C 1.53002 * 117.49992 * 111.25454 * 24 22 21 27 27 C 1.53000 * 117.50034 * 179.91227 * 24 22 21 28 28 H 1.09008 * 117.49673 * 359.97438 * 27 24 22 29 29 C 1.52996 * 117.49997 * 144.99485 * 27 24 22 30 30 F 1.39897 * 109.47193 * 300.00398 * 29 27 24 31 31 F 1.39904 * 109.46765 * 60.00233 * 29 27 24 32 32 H 1.08998 * 109.47367 * 296.75275 * 1 2 3 33 33 H 1.09001 * 109.46750 * 56.74753 * 1 2 3 34 34 H 1.09001 * 109.47376 * 176.74609 * 1 2 3 35 35 H 1.08997 * 110.66335 * 322.66351 * 4 2 1 36 36 H 1.08994 * 110.66649 * 85.62947 * 4 2 1 37 37 H 1.09000 * 109.47056 * 310.00378 * 6 5 4 38 38 H 1.09002 * 109.46762 * 69.99593 * 6 5 4 39 39 H 0.97004 * 120.00047 * 0.02562 * 9 7 6 40 40 H 0.96998 * 119.99273 * 180.02562 * 13 12 10 41 41 H 1.09000 * 109.91681 * 215.31219 * 18 5 4 42 42 H 1.09000 * 109.91823 * 94.02586 * 18 5 4 43 43 H 0.97004 * 119.99847 * 90.71528 * 21 19 18 44 44 H 1.09000 * 117.49996 * 215.00670 * 26 24 22 45 45 H 1.08998 * 117.49632 * 359.97438 * 26 24 22 46 46 H 1.09002 * 109.47340 * 179.97438 * 29 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9168 1.0191 0.0000 4 6 2.0782 -0.7946 -1.2119 5 7 3.4318 -1.2093 -0.7622 6 6 3.9211 -2.3499 -1.5480 7 6 5.1736 -2.8969 -0.9133 8 8 5.6150 -2.3870 0.0950 9 7 5.8034 -3.9526 -1.4657 10 6 6.9433 -4.4499 -0.8885 11 1 7.3363 -3.9959 0.0092 12 6 7.5922 -5.5386 -1.4579 13 7 8.6845 -6.0156 -0.9043 14 14 6.9121 -6.3243 -3.0102 15 1 7.5059 -5.6638 -4.2002 16 1 7.2537 -7.7694 -3.0240 17 1 5.4361 -6.1643 -3.0401 18 6 3.2892 -1.5710 0.6648 19 6 2.0770 -0.7929 1.2092 20 1 1.3201 -1.4822 1.5834 21 7 2.4970 0.1249 2.2710 22 6 2.5239 -0.2935 3.5519 23 8 2.2007 -1.4300 3.8254 24 6 2.9555 0.6508 4.6442 25 1 3.7322 1.3642 4.3691 26 6 1.8894 1.1155 5.6384 27 6 2.9626 0.1165 6.0779 28 1 2.6547 -0.9179 6.2311 29 6 4.0596 0.6246 7.0156 30 9 5.3129 0.2917 6.4908 31 9 3.9601 2.0146 7.1396 32 1 -0.3634 0.4626 0.9176 33 1 -0.3633 0.5635 -0.8594 34 1 -0.3634 -1.0260 -0.0583 35 1 1.4559 -1.6664 -1.4136 36 1 2.1417 -0.1565 -2.0933 37 1 3.1576 -3.1274 -1.5741 38 1 4.1417 -2.0231 -2.5642 39 1 5.4507 -4.3602 -2.2722 40 1 9.1377 -6.7754 -1.3020 41 1 4.1886 -1.2873 1.2114 42 1 3.1160 -2.6429 0.7607 43 1 2.7559 1.0338 2.0522 44 1 1.9647 2.1347 6.0172 45 1 0.8757 0.7386 5.5021 46 1 3.9417 0.1635 7.9962 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206923644.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:09 Heat of formation + Delta-G solvation = -134.225650 kcal Electronic energy + Delta-G solvation = -30544.838247 eV Core-core repulsion = 25913.252955 eV Total energy + Delta-G solvation = -4631.585292 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.20277 -47.18386 -40.42242 -39.26705 -37.91086 -36.60265 -34.54081 -33.89498 -32.64306 -31.66674 -29.21197 -27.94581 -27.34075 -25.48595 -24.52307 -23.33905 -21.65362 -21.19655 -20.62773 -19.98766 -19.31448 -18.31280 -18.13911 -17.34346 -17.26051 -16.80999 -16.49976 -15.94048 -15.37405 -15.18697 -14.90825 -14.68777 -14.45529 -14.18800 -14.03244 -13.69478 -13.56089 -13.43564 -13.25622 -13.12054 -12.72473 -12.70380 -12.52266 -12.36992 -12.21295 -12.04357 -11.89947 -11.59758 -11.49973 -11.34747 -11.17157 -11.07636 -10.88061 -10.82278 -10.72047 -10.58776 -9.96401 -9.93319 -9.55564 -9.08608 -8.51918 -8.17748 -8.05426 -6.29784 -3.81163 2.29836 2.91980 3.03177 3.07477 3.15574 3.21248 3.53671 3.73662 3.94365 4.01174 4.04763 4.11368 4.25923 4.31653 4.49202 4.63568 4.78166 4.82629 4.86809 4.90119 4.96017 5.21514 5.22642 5.24109 5.32023 5.39308 5.48361 5.52546 5.60830 5.62125 5.63242 5.72629 5.77938 5.87910 5.91083 6.00826 6.06882 6.37524 6.67324 7.09092 7.13457 7.42769 7.59097 8.14594 8.15662 8.60705 8.96269 9.43248 9.83364 10.83346 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.010350 B = 0.002743 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2704.779953 B =10206.151744 C =12454.980995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.100 4.100 3 H 0.089 0.911 4 C 0.036 3.964 5 N -0.495 5.495 6 C 0.033 3.967 7 C 0.449 3.551 8 O -0.561 6.561 9 N -0.589 5.589 10 C -0.304 4.304 11 H 0.120 0.880 12 C 0.041 3.959 13 N -0.881 5.881 14 Si 0.880 3.120 15 H -0.270 1.270 16 H -0.277 1.277 17 H -0.270 1.270 18 C 0.040 3.960 19 C 0.134 3.866 20 H 0.094 0.906 21 N -0.710 5.710 22 C 0.545 3.455 23 O -0.536 6.536 24 C -0.170 4.170 25 H 0.131 0.869 26 C -0.127 4.127 27 C -0.192 4.192 28 H 0.146 0.854 29 C 0.292 3.708 30 F -0.197 7.197 31 F -0.206 7.206 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.046 0.954 36 H 0.085 0.915 37 H 0.051 0.949 38 H 0.093 0.907 39 H 0.370 0.630 40 H 0.273 0.727 41 H 0.108 0.892 42 H 0.047 0.953 43 H 0.402 0.598 44 H 0.116 0.884 45 H 0.110 0.890 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.142 15.721 7.444 25.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.119 4.119 3 H 0.107 0.893 4 C -0.092 4.092 5 N -0.219 5.219 6 C -0.099 4.099 7 C 0.235 3.765 8 O -0.443 6.443 9 N -0.229 5.229 10 C -0.433 4.433 11 H 0.137 0.863 12 C -0.162 4.162 13 N -0.521 5.521 14 Si 0.706 3.294 15 H -0.196 1.196 16 H -0.202 1.202 17 H -0.196 1.196 18 C -0.089 4.089 19 C 0.029 3.971 20 H 0.112 0.888 21 N -0.360 5.360 22 C 0.331 3.669 23 O -0.413 6.413 24 C -0.191 4.191 25 H 0.149 0.851 26 C -0.165 4.165 27 C -0.211 4.211 28 H 0.164 0.836 29 C 0.239 3.761 30 F -0.178 7.178 31 F -0.187 7.187 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.103 0.897 37 H 0.069 0.931 38 H 0.111 0.889 39 H 0.203 0.797 40 H 0.084 0.916 41 H 0.126 0.874 42 H 0.065 0.935 43 H 0.237 0.763 44 H 0.135 0.865 45 H 0.128 0.872 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -18.464 15.502 8.234 25.476 hybrid contribution -0.535 -1.093 -1.477 1.913 sum -18.999 14.409 6.757 24.784 Atomic orbital electron populations 1.21773 0.94053 1.02178 1.01952 1.22333 0.95656 1.00049 0.93884 0.89255 1.23361 0.89618 0.98600 0.97620 1.64629 1.21407 1.33205 1.02661 1.22150 0.96628 0.92483 0.98649 1.19632 0.86753 0.83013 0.87103 1.90551 1.67499 1.60328 1.25916 1.42191 1.25587 1.29048 1.26034 1.19433 0.99829 1.12600 1.11412 0.86274 1.25042 0.96054 0.96857 0.98208 1.69628 1.17508 1.25053 1.39890 0.86668 0.79032 0.80025 0.83647 1.19579 1.20182 1.19550 1.23342 0.98488 0.97918 0.89138 1.22089 0.96819 0.91609 0.86620 0.88845 1.45888 1.68228 1.15967 1.05943 1.19440 0.77076 0.87366 0.83002 1.90720 1.48306 1.19404 1.82878 1.22251 1.04350 1.02594 0.89886 0.85115 1.23108 0.94724 0.99737 0.98914 1.23522 0.99865 1.02699 0.95023 0.83607 1.21269 0.80091 0.76591 0.98194 1.93049 1.43815 1.92047 1.88891 1.92961 1.96079 1.32665 1.97011 0.92399 0.92117 0.92422 0.93528 0.89689 0.93150 0.88909 0.79714 0.91619 0.87386 0.93467 0.76296 0.86537 0.87209 0.86144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 9.16 37.16 0.34 -0.76 16 2 C -0.10 -0.98 3.37 -88.76 -0.30 -1.28 16 3 H 0.09 0.80 7.76 -51.93 -0.40 0.40 16 4 C 0.04 0.41 6.00 -1.89 -0.01 0.40 16 5 N -0.49 -7.87 5.26 -231.89 -1.22 -9.09 16 6 C 0.03 0.56 5.48 -4.98 -0.03 0.53 16 7 C 0.45 10.40 7.36 -10.99 -0.08 10.32 16 8 O -0.56 -15.14 13.37 5.54 0.07 -15.07 16 9 N -0.59 -14.31 5.09 -10.96 -0.06 -14.37 16 10 C -0.30 -8.75 10.16 -14.93 -0.15 -8.91 16 11 H 0.12 3.93 7.39 -52.48 -0.39 3.54 16 12 C 0.04 1.15 5.50 -17.46 -0.10 1.05 16 13 N -0.88 -26.12 13.96 55.50 0.77 -25.35 16 14 Si 0.88 19.64 27.74 -169.99 -4.71 14.92 16 15 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 16 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 17 H -0.27 -5.50 6.52 56.52 0.37 -5.13 16 18 C 0.04 0.68 4.86 -2.75 -0.01 0.67 16 19 C 0.13 1.72 2.92 -66.57 -0.19 1.53 16 20 H 0.09 1.29 7.26 -51.93 -0.38 0.91 16 21 N -0.71 -8.21 5.01 -52.49 -0.26 -8.47 16 22 C 0.55 7.15 7.61 -10.99 -0.08 7.07 16 23 O -0.54 -9.12 15.91 5.56 0.09 -9.03 16 24 C -0.17 -1.69 5.83 -91.77 -0.54 -2.22 16 25 H 0.13 1.20 8.14 -51.93 -0.42 0.78 16 26 C -0.13 -0.92 9.63 -26.69 -0.26 -1.18 16 27 C -0.19 -1.73 5.67 -90.59 -0.51 -2.25 16 28 H 0.15 1.42 7.67 -51.92 -0.40 1.02 16 29 C 0.29 2.46 5.67 37.16 0.21 2.67 16 30 F -0.20 -2.38 17.29 2.25 0.04 -2.34 16 31 F -0.21 -1.86 15.92 2.25 0.04 -1.83 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.47 8.10 -51.93 -0.42 0.04 16 35 H 0.05 0.50 7.73 -51.93 -0.40 0.10 16 36 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.05 0.77 7.89 -51.93 -0.41 0.36 16 38 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 39 H 0.37 7.89 5.76 -40.82 -0.24 7.65 16 40 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 41 H 0.11 2.27 6.53 -51.93 -0.34 1.93 16 42 H 0.05 0.91 7.59 -51.93 -0.39 0.52 16 43 H 0.40 3.60 8.38 -40.82 -0.34 3.26 16 44 H 0.12 0.69 7.22 -51.93 -0.38 0.31 16 45 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.12 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 384.08 15.07 5.79 5.79 Total: -1.00 -36.00 384.08 -7.78 -43.78 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: -6.61 Total: 13.42 kcal Atomic # 6 Polarization: 9.36 SS G_CDS: -1.71 Total: 7.65 kcal Atomic # 7 Polarization: -56.51 SS G_CDS: -0.76 Total: -57.28 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: 0.16 Total: -24.10 kcal Atomic # 9 Polarization: -4.24 SS G_CDS: 0.07 Total: -4.17 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -4.71 Total: 14.92 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.00 -7.78 -43.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206923644.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.451 kcal (2) G-P(sol) polarization free energy of solvation -35.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds