Wall clock time and date at job start Wed Apr 1 2020 03:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 110.28963 * 2 1 4 4 C 1.54000 * 110.32450 * 237.86454 * 2 1 3 5 5 N 1.47489 * 107.08629 * 242.41432 * 4 2 1 6 6 C 1.34775 * 127.03639 * 154.51804 * 5 4 2 7 7 O 1.21280 * 120.00173 * 180.02562 * 6 5 4 8 8 C 1.50699 * 119.99876 * 0.02562 * 6 5 4 9 9 H 1.09002 * 112.90791 * 311.25083 * 8 6 5 10 10 C 1.53779 * 113.61429 * 82.50410 * 8 6 5 11 11 C 1.53779 * 87.08402 * 139.98140 * 10 8 6 12 12 C 1.53784 * 113.61308 * 179.97438 * 8 6 5 13 13 F 1.39898 * 113.61310 * 105.47458 * 12 8 6 14 14 F 1.39893 * 113.61372 * 334.56810 * 12 8 6 15 15 C 1.48119 * 105.92954 * 334.78163 * 5 4 2 16 16 C 1.54595 * 103.42205 * 39.02303 * 15 5 4 17 17 H 1.09004 * 110.57518 * 81.17367 * 16 15 5 18 18 N 1.46905 * 110.98733 * 204.37425 * 16 15 5 19 19 C 1.46898 * 110.99899 * 268.65150 * 18 16 15 20 20 C 1.50704 * 109.47162 * 179.97438 * 19 18 16 21 21 O 1.21288 * 119.99749 * 0.02562 * 20 19 18 22 22 N 1.34775 * 119.99931 * 179.97438 * 20 19 18 23 23 C 1.37090 * 120.00150 * 180.02562 * 22 20 19 24 24 H 1.08008 * 119.99635 * 359.97438 * 23 22 20 25 25 C 1.38946 * 120.00771 * 180.02562 * 23 22 20 26 26 N 1.31417 * 119.99576 * 359.97438 * 25 23 22 27 27 Si 1.86799 * 120.00626 * 179.97438 * 25 23 22 28 28 H 1.48503 * 109.47069 * 59.99626 * 27 25 23 29 29 H 1.48500 * 109.47031 * 179.97438 * 27 25 23 30 30 H 1.48500 * 109.46975 * 299.99945 * 27 25 23 31 31 H 1.08999 * 109.47339 * 180.68244 * 1 2 3 32 32 H 1.09005 * 109.46776 * 300.67947 * 1 2 3 33 33 H 1.08997 * 109.46869 * 60.68293 * 1 2 3 34 34 H 1.08996 * 109.91551 * 123.05724 * 4 2 1 35 35 H 1.09003 * 110.07889 * 1.86515 * 4 2 1 36 36 H 1.09006 * 113.61307 * 25.43343 * 10 8 6 37 37 H 1.08999 * 113.69146 * 254.53828 * 10 8 6 38 38 H 1.08997 * 113.61646 * 220.02209 * 11 10 8 39 39 H 1.08998 * 113.69354 * 89.12517 * 11 10 8 40 40 H 1.08999 * 110.65995 * 157.50605 * 15 5 4 41 41 H 1.08996 * 110.66159 * 280.62546 * 15 5 4 42 42 H 1.00897 * 110.99527 * 144.69945 * 18 16 15 43 43 H 1.09007 * 109.47448 * 300.00293 * 19 18 16 44 44 H 1.09001 * 109.47449 * 59.99882 * 19 18 16 45 45 H 0.97001 * 119.99993 * 0.02562 * 22 20 19 46 46 H 0.96995 * 120.00130 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0650 -0.7682 -1.2229 5 7 2.8277 -1.9218 -0.7103 6 6 3.0613 -3.0873 -1.3454 7 8 3.7091 -3.9558 -0.8003 8 6 2.5176 -3.3115 -2.7329 9 1 1.4612 -3.0577 -2.8208 10 6 3.3916 -2.7038 -3.8426 11 6 3.0997 -3.9735 -4.6595 12 6 2.8714 -4.6890 -3.3180 13 9 1.7957 -5.5832 -3.3361 14 9 4.0340 -5.2466 -2.7752 15 6 3.2789 -1.5398 0.6478 16 6 2.0671 -0.7736 1.2263 17 1 1.3175 -1.4700 1.6020 18 7 2.4879 0.1552 2.2838 19 6 2.4316 -0.4887 3.6029 20 6 2.8698 0.4922 4.6598 21 8 3.1964 1.6171 4.3450 22 7 2.8978 0.1198 5.9548 23 6 3.2959 1.0122 6.9162 24 1 3.5875 2.0137 6.6359 25 6 3.3253 0.6282 8.2513 26 7 2.9709 -0.5904 8.5923 27 14 3.8685 1.8440 9.5613 28 1 2.9659 3.0232 9.5469 29 1 3.8109 1.1933 10.8949 30 1 5.2598 2.2823 9.2834 31 1 -0.3634 -1.0276 0.0122 32 1 -0.3633 0.5244 0.8839 33 1 -0.3633 0.5032 -0.8960 34 1 2.7181 -0.1228 -1.8101 35 1 1.2354 -1.1157 -1.8387 36 1 4.4397 -2.5957 -3.5631 37 1 2.9749 -1.7971 -4.2812 38 1 3.9629 -4.3458 -5.2113 39 1 2.2028 -3.9020 -5.2748 40 1 3.4935 -2.4259 1.2452 41 1 4.1522 -0.8899 0.5943 42 1 1.9317 0.9968 2.2681 43 1 1.4104 -0.8109 3.8067 44 1 3.0944 -1.3539 3.6136 45 1 2.6362 -0.7797 6.2065 46 1 2.9911 -0.8585 9.5243 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001214931577.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:13:24 Heat of formation + Delta-G solvation = -138.415365 kcal Electronic energy + Delta-G solvation = -30435.416266 eV Core-core repulsion = 25803.649294 eV Total energy + Delta-G solvation = -4631.766972 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.05386 -47.37261 -40.59822 -38.89133 -38.04994 -37.20823 -34.79257 -33.81748 -32.59945 -31.22638 -29.59937 -27.64693 -26.67438 -26.03975 -25.45697 -24.18138 -22.38447 -21.01861 -20.47177 -19.76341 -19.17601 -18.35435 -17.89148 -17.43402 -16.84564 -16.61958 -16.40178 -15.73389 -15.44676 -15.23401 -14.89491 -14.59543 -14.37296 -14.24447 -14.05557 -13.91364 -13.76755 -13.63349 -13.59706 -13.43262 -13.22594 -12.99173 -12.61326 -12.29131 -12.26369 -12.10344 -11.91060 -11.70929 -11.62200 -11.53264 -11.35966 -11.19590 -11.10503 -11.01347 -10.76092 -10.44762 -10.22055 -9.98023 -9.51058 -8.96349 -8.50069 -8.16673 -7.97507 -6.42196 -3.83360 2.22825 2.52488 3.06844 3.19693 3.25719 3.26213 3.29861 3.77783 3.82176 3.87995 3.88722 4.02437 4.15937 4.22592 4.35006 4.51908 4.59610 4.74180 4.92840 4.96783 5.00886 5.05390 5.12615 5.13236 5.16554 5.18727 5.21430 5.27122 5.48435 5.54802 5.57529 5.69643 5.73820 5.79275 5.82699 5.90604 5.95886 6.06528 6.26375 7.12446 7.23825 7.54278 7.55286 7.85107 8.04728 8.59769 9.16638 9.52959 10.03923 10.75355 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.021439 B = 0.001961 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.730675 B =14273.944079 C =14958.536482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.111 4.111 3 H 0.099 0.901 4 C 0.108 3.892 5 N -0.617 5.617 6 C 0.539 3.461 7 O -0.519 6.519 8 C -0.166 4.166 9 H 0.138 0.862 10 C -0.118 4.118 11 C -0.164 4.164 12 C 0.280 3.720 13 F -0.189 7.189 14 F -0.157 7.157 15 C 0.114 3.886 16 C 0.077 3.923 17 H 0.060 0.940 18 N -0.656 5.656 19 C 0.049 3.951 20 C 0.440 3.560 21 O -0.584 6.584 22 N -0.562 5.562 23 C -0.300 4.300 24 H 0.103 0.897 25 C 0.022 3.978 26 N -0.901 5.901 27 Si 0.932 3.068 28 H -0.274 1.274 29 H -0.284 1.284 30 H -0.273 1.273 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.116 0.884 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.354 0.646 43 H 0.045 0.955 44 H 0.087 0.913 45 H 0.393 0.607 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.805 -4.772 -27.929 28.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.130 4.130 3 H 0.118 0.882 4 C -0.016 4.016 5 N -0.352 5.352 6 C 0.326 3.674 7 O -0.394 6.394 8 C -0.188 4.188 9 H 0.156 0.844 10 C -0.155 4.155 11 C -0.202 4.202 12 C 0.243 3.757 13 F -0.170 7.170 14 F -0.138 7.138 15 C -0.009 4.009 16 C -0.035 4.035 17 H 0.078 0.922 18 N -0.289 5.289 19 C -0.084 4.084 20 C 0.226 3.774 21 O -0.469 6.469 22 N -0.199 5.199 23 C -0.430 4.430 24 H 0.121 0.879 25 C -0.180 4.180 26 N -0.542 5.542 27 Si 0.759 3.241 28 H -0.199 1.199 29 H -0.210 1.210 30 H -0.199 1.199 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.134 0.866 40 H 0.102 0.898 41 H 0.105 0.895 42 H 0.175 0.825 43 H 0.063 0.937 44 H 0.105 0.895 45 H 0.226 0.774 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.544 -4.837 -27.746 28.529 hybrid contribution -0.971 -0.224 1.224 1.579 sum -5.515 -5.060 -26.522 27.558 Atomic orbital electron populations 1.21894 0.93890 1.02110 1.02480 1.22302 0.96357 1.00596 0.93731 0.88231 1.22211 0.95469 0.87294 0.96586 1.48697 1.53804 1.14647 1.18005 1.19588 0.80653 0.80814 0.86341 1.90825 1.39474 1.42195 1.66937 1.24032 1.04168 0.96185 0.94416 0.84377 1.22764 1.00913 0.98287 0.93563 1.24066 1.05472 0.95169 0.95495 1.21742 0.74676 0.83530 0.95786 1.93024 1.55289 1.71669 1.97002 1.93116 1.47061 1.86650 1.86954 1.22490 0.97445 0.99550 0.81411 1.22598 0.95123 0.94264 0.91481 0.92227 1.60001 1.60222 1.06920 1.01778 1.21763 1.00046 0.97595 0.88952 1.19747 0.85286 0.88997 0.83379 1.90519 1.53631 1.21465 1.81247 1.41859 1.58403 1.14819 1.04787 1.19648 1.41319 0.96119 0.85918 0.87946 1.25278 0.97445 0.96912 0.98320 1.69606 1.47972 1.17590 1.19042 0.85907 0.79365 0.79804 0.79073 1.19920 1.20977 1.19853 0.92504 0.91922 0.92057 0.90919 0.90746 0.88182 0.88223 0.88137 0.86590 0.89849 0.89452 0.82470 0.93669 0.89515 0.77426 0.91777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 8.90 37.16 0.33 -0.70 16 2 C -0.11 -0.92 3.08 -89.25 -0.27 -1.19 16 3 H 0.10 0.85 7.94 -51.93 -0.41 0.43 16 4 C 0.11 0.76 6.42 -2.98 -0.02 0.74 16 5 N -0.62 -6.45 3.29 -169.98 -0.56 -7.01 16 6 C 0.54 6.40 7.37 -10.99 -0.08 6.32 16 7 O -0.52 -8.59 14.96 5.56 0.08 -8.50 16 8 C -0.17 -1.28 3.26 -90.96 -0.30 -1.58 16 9 H 0.14 0.72 7.55 -51.93 -0.39 0.32 16 10 C -0.12 -0.58 7.61 -25.92 -0.20 -0.78 16 11 C -0.16 -0.80 7.87 -25.94 -0.20 -1.00 16 12 C 0.28 2.63 3.01 -25.94 -0.08 2.55 16 13 F -0.19 -2.01 17.41 2.25 0.04 -1.97 16 14 F -0.16 -2.06 15.20 2.25 0.03 -2.02 16 15 C 0.11 1.41 6.76 -2.31 -0.02 1.40 16 16 C 0.08 0.88 2.92 -66.02 -0.19 0.69 16 17 H 0.06 0.70 7.54 -51.93 -0.39 0.31 16 18 N -0.66 -9.76 5.99 -106.20 -0.64 -10.40 16 19 C 0.05 0.84 6.03 -4.97 -0.03 0.81 16 20 C 0.44 10.24 7.82 -10.98 -0.09 10.15 16 21 O -0.58 -15.53 15.78 5.55 0.09 -15.45 16 22 N -0.56 -14.22 5.29 -10.96 -0.06 -14.27 16 23 C -0.30 -8.37 9.68 -14.94 -0.14 -8.51 16 24 H 0.10 2.98 7.16 -52.48 -0.38 2.60 16 25 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 26 N -0.90 -24.61 13.05 55.50 0.72 -23.89 16 27 Si 0.93 21.07 29.55 -169.99 -5.02 16.04 16 28 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 29 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 30 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 31 H 0.06 0.41 8.13 -51.93 -0.42 -0.01 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.37 6.84 -51.93 -0.36 0.01 16 36 H 0.10 0.61 8.09 -51.93 -0.42 0.19 16 37 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 38 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.12 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.08 1.18 7.85 -51.93 -0.41 0.77 16 41 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 42 H 0.35 5.32 8.04 -39.29 -0.32 5.00 16 43 H 0.05 0.70 8.08 -51.93 -0.42 0.28 16 44 H 0.09 1.43 8.14 -51.93 -0.42 1.00 16 45 H 0.39 9.54 7.90 -40.82 -0.32 9.21 16 46 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 386.62 15.07 5.83 5.83 Total: -1.00 -34.72 386.62 -7.62 -42.34 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: -6.75 Total: 9.91 kcal Atomic # 6 Polarization: 10.78 SS G_CDS: -1.39 Total: 9.39 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: -0.53 Total: -55.57 kcal Atomic # 8 Polarization: -24.12 SS G_CDS: 0.17 Total: -23.95 kcal Atomic # 9 Polarization: -4.07 SS G_CDS: 0.07 Total: -3.99 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.72 -7.62 -42.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214931577.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.075 kcal (2) G-P(sol) polarization free energy of solvation -34.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds