Wall clock time and date at job start Wed Apr 1 2020 03:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 110.28963 * 2 1 4 4 C 1.54000 * 110.32450 * 237.86454 * 2 1 3 5 5 N 1.47489 * 107.08629 * 242.41432 * 4 2 1 6 6 C 1.34775 * 127.03639 * 154.51804 * 5 4 2 7 7 O 1.21280 * 120.00173 * 180.02562 * 6 5 4 8 8 C 1.50699 * 119.99876 * 0.02562 * 6 5 4 9 9 H 1.09002 * 112.90791 * 311.25083 * 8 6 5 10 10 C 1.53779 * 113.61429 * 82.50410 * 8 6 5 11 11 C 1.53779 * 87.08402 * 139.98140 * 10 8 6 12 12 C 1.53784 * 113.61308 * 179.97438 * 8 6 5 13 13 F 1.39898 * 113.61310 * 105.47458 * 12 8 6 14 14 F 1.39893 * 113.61372 * 334.56810 * 12 8 6 15 15 C 1.48119 * 105.92954 * 334.78163 * 5 4 2 16 16 C 1.54595 * 103.42205 * 39.02303 * 15 5 4 17 17 H 1.09004 * 110.57518 * 81.17367 * 16 15 5 18 18 N 1.46905 * 110.98733 * 204.37425 * 16 15 5 19 19 C 1.46898 * 110.99899 * 268.65150 * 18 16 15 20 20 C 1.50704 * 109.47162 * 179.97438 * 19 18 16 21 21 O 1.21288 * 119.99749 * 0.02562 * 20 19 18 22 22 N 1.34775 * 119.99931 * 179.97438 * 20 19 18 23 23 C 1.37090 * 120.00150 * 180.02562 * 22 20 19 24 24 H 1.08008 * 119.99635 * 359.97438 * 23 22 20 25 25 C 1.38946 * 120.00771 * 180.02562 * 23 22 20 26 26 N 1.31417 * 119.99576 * 359.97438 * 25 23 22 27 27 Si 1.86799 * 120.00626 * 179.97438 * 25 23 22 28 28 H 1.48503 * 109.47069 * 59.99626 * 27 25 23 29 29 H 1.48500 * 109.47031 * 179.97438 * 27 25 23 30 30 H 1.48500 * 109.46975 * 299.99945 * 27 25 23 31 31 H 1.08999 * 109.47339 * 180.68244 * 1 2 3 32 32 H 1.09005 * 109.46776 * 300.67947 * 1 2 3 33 33 H 1.08997 * 109.46869 * 60.68293 * 1 2 3 34 34 H 1.08996 * 109.91551 * 123.05724 * 4 2 1 35 35 H 1.09003 * 110.07889 * 1.86515 * 4 2 1 36 36 H 1.09006 * 113.61307 * 25.43343 * 10 8 6 37 37 H 1.08999 * 113.69146 * 254.53828 * 10 8 6 38 38 H 1.08997 * 113.61646 * 220.02209 * 11 10 8 39 39 H 1.08998 * 113.69354 * 89.12517 * 11 10 8 40 40 H 1.08999 * 110.65995 * 157.50605 * 15 5 4 41 41 H 1.08996 * 110.66159 * 280.62546 * 15 5 4 42 42 H 1.00897 * 110.99527 * 144.69945 * 18 16 15 43 43 H 1.09007 * 109.47448 * 300.00293 * 19 18 16 44 44 H 1.09001 * 109.47449 * 59.99882 * 19 18 16 45 45 H 0.97001 * 119.99993 * 0.02562 * 22 20 19 46 46 H 0.96995 * 120.00130 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0650 -0.7682 -1.2229 5 7 2.8277 -1.9218 -0.7103 6 6 3.0613 -3.0873 -1.3454 7 8 3.7091 -3.9558 -0.8003 8 6 2.5176 -3.3115 -2.7329 9 1 1.4612 -3.0577 -2.8208 10 6 3.3916 -2.7038 -3.8426 11 6 3.0997 -3.9735 -4.6595 12 6 2.8714 -4.6890 -3.3180 13 9 1.7957 -5.5832 -3.3361 14 9 4.0340 -5.2466 -2.7752 15 6 3.2789 -1.5398 0.6478 16 6 2.0671 -0.7736 1.2263 17 1 1.3175 -1.4700 1.6020 18 7 2.4879 0.1552 2.2838 19 6 2.4316 -0.4887 3.6029 20 6 2.8698 0.4922 4.6598 21 8 3.1964 1.6171 4.3450 22 7 2.8978 0.1198 5.9548 23 6 3.2959 1.0122 6.9162 24 1 3.5875 2.0137 6.6359 25 6 3.3253 0.6282 8.2513 26 7 2.9709 -0.5904 8.5923 27 14 3.8685 1.8440 9.5613 28 1 2.9659 3.0232 9.5469 29 1 3.8109 1.1933 10.8949 30 1 5.2598 2.2823 9.2834 31 1 -0.3634 -1.0276 0.0122 32 1 -0.3633 0.5244 0.8839 33 1 -0.3633 0.5032 -0.8960 34 1 2.7181 -0.1228 -1.8101 35 1 1.2354 -1.1157 -1.8387 36 1 4.4397 -2.5957 -3.5631 37 1 2.9749 -1.7971 -4.2812 38 1 3.9629 -4.3458 -5.2113 39 1 2.2028 -3.9020 -5.2748 40 1 3.4935 -2.4259 1.2452 41 1 4.1522 -0.8899 0.5943 42 1 1.9317 0.9968 2.2681 43 1 1.4104 -0.8109 3.8067 44 1 3.0944 -1.3539 3.6136 45 1 2.6362 -0.7797 6.2065 46 1 2.9911 -0.8585 9.5243 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001214931577.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:13:23 Heat of formation + Delta-G solvation = -164.133684 kcal Electronic energy + Delta-G solvation = -30436.531496 eV Core-core repulsion = 25803.649294 eV Total energy + Delta-G solvation = -4632.882202 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -49.79730 -48.15382 -41.43948 -40.23651 -39.36940 -37.94757 -36.23948 -35.57382 -33.48285 -33.21648 -30.58305 -28.66653 -27.52278 -27.10860 -26.01483 -25.80179 -23.31540 -21.67984 -21.37895 -20.98590 -20.43030 -19.89689 -19.06871 -18.22448 -17.76530 -17.65722 -17.31848 -17.00161 -16.72473 -16.46217 -16.08124 -15.98613 -15.58490 -15.22577 -15.07658 -15.01165 -14.68802 -14.50513 -14.44061 -14.39552 -14.17868 -13.93296 -13.70018 -13.54643 -13.47648 -13.04562 -12.92719 -12.82766 -12.74402 -12.45953 -12.44586 -12.20960 -12.13996 -12.00961 -11.94046 -11.70058 -11.58177 -11.51212 -10.86584 -10.37280 -10.03906 -9.84007 -9.42196 -8.47825 -5.97116 1.39108 1.39476 1.41051 1.52297 1.71416 2.02478 2.28003 2.46463 2.74059 2.86563 3.17691 3.19364 3.28188 3.39377 3.40824 3.54647 3.61306 3.82821 3.95304 4.21566 4.27736 4.28604 4.33260 4.44001 4.47057 4.49045 4.50111 4.53547 4.65486 4.74725 4.76415 4.86294 4.88421 4.89508 4.98874 5.06864 5.16549 5.24596 5.37983 5.39771 5.86071 6.05583 6.33810 6.45029 6.57315 6.98439 7.10287 7.53650 8.07962 8.69354 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.021439 B = 0.001961 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.730675 B =14273.944079 C =14958.536482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.103 4.103 3 H 0.101 0.899 4 C 0.106 3.894 5 N -0.613 5.613 6 C 0.529 3.471 7 O -0.580 6.580 8 C -0.159 4.159 9 H 0.173 0.827 10 C -0.106 4.106 11 C -0.142 4.142 12 C 0.244 3.756 13 F -0.202 7.202 14 F -0.189 7.189 15 C 0.112 3.888 16 C 0.080 3.920 17 H 0.060 0.940 18 N -0.665 5.665 19 C 0.064 3.936 20 C 0.440 3.560 21 O -0.619 6.619 22 N -0.574 5.574 23 C -0.334 4.334 24 H 0.082 0.918 25 C -0.015 4.015 26 N -0.922 5.922 27 Si 0.995 3.005 28 H -0.269 1.269 29 H -0.272 1.272 30 H -0.272 1.272 31 H 0.056 0.944 32 H 0.050 0.950 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.109 0.891 36 H 0.082 0.918 37 H 0.141 0.859 38 H 0.106 0.894 39 H 0.148 0.852 40 H 0.055 0.945 41 H 0.076 0.924 42 H 0.355 0.645 43 H 0.068 0.932 44 H 0.093 0.907 45 H 0.395 0.605 46 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.419 -3.573 -30.410 31.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.122 4.122 3 H 0.119 0.881 4 C -0.015 4.015 5 N -0.346 5.346 6 C 0.319 3.681 7 O -0.460 6.460 8 C -0.180 4.180 9 H 0.190 0.810 10 C -0.144 4.144 11 C -0.180 4.180 12 C 0.207 3.793 13 F -0.183 7.183 14 F -0.170 7.170 15 C -0.012 4.012 16 C -0.031 4.031 17 H 0.078 0.922 18 N -0.298 5.298 19 C -0.068 4.068 20 C 0.227 3.773 21 O -0.506 6.506 22 N -0.211 5.211 23 C -0.463 4.463 24 H 0.100 0.900 25 C -0.215 4.215 26 N -0.563 5.563 27 Si 0.818 3.182 28 H -0.194 1.194 29 H -0.196 1.196 30 H -0.197 1.197 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.105 0.895 34 H 0.112 0.888 35 H 0.127 0.873 36 H 0.101 0.899 37 H 0.159 0.841 38 H 0.124 0.876 39 H 0.166 0.834 40 H 0.074 0.926 41 H 0.094 0.906 42 H 0.175 0.825 43 H 0.086 0.914 44 H 0.112 0.888 45 H 0.229 0.771 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.189 -3.627 -30.260 31.099 hybrid contribution -0.463 -0.614 1.975 2.119 sum -6.653 -4.241 -28.285 29.365 Atomic orbital electron populations 1.21878 0.92477 1.02345 1.03254 1.22293 0.97406 1.00251 0.92298 0.88095 1.22500 0.96600 0.86125 0.96315 1.48763 1.53456 1.15332 1.17027 1.20440 0.79830 0.80172 0.87692 1.90796 1.42287 1.44233 1.68658 1.24241 1.06329 0.95497 0.91961 0.80964 1.22819 0.99683 0.99910 0.91952 1.24112 1.07135 0.93326 0.93397 1.22705 0.73631 0.83760 0.99171 1.92988 1.55752 1.72330 1.97241 1.93043 1.48870 1.87256 1.87825 1.22315 0.97755 0.98259 0.82832 1.22591 0.94624 0.94073 0.91785 0.92239 1.59932 1.61031 1.07586 1.01287 1.21581 1.01101 0.95872 0.88289 1.20749 0.83409 0.89413 0.83713 1.90485 1.54770 1.23445 1.81873 1.41952 1.59079 1.14673 1.05393 1.19650 1.43309 0.96042 0.87328 0.90050 1.26095 0.96926 0.98702 0.99779 1.69677 1.48066 1.18752 1.19762 0.84959 0.78809 0.77735 0.76665 1.19403 1.19629 1.19728 0.92450 0.93082 0.89472 0.88754 0.87282 0.89901 0.84111 0.87582 0.83408 0.92648 0.90558 0.82454 0.91447 0.88848 0.77104 0.91306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 8.90 71.98 0.64 -0.89 16 2 C -0.10 -1.43 3.08 -9.90 -0.03 -1.47 16 3 H 0.10 1.44 7.94 -2.39 -0.02 1.42 16 4 C 0.11 1.10 6.42 86.53 0.56 1.66 16 5 N -0.61 -12.03 3.29 -810.09 -2.67 -14.70 16 6 C 0.53 12.33 7.37 87.66 0.65 12.97 16 7 O -0.58 -20.26 14.96 -3.03 -0.05 -20.31 16 8 C -0.16 -2.06 3.26 -11.01 -0.04 -2.09 16 9 H 0.17 0.98 7.55 -2.39 -0.02 0.96 16 10 C -0.11 -0.67 7.61 31.12 0.24 -0.43 16 11 C -0.14 -0.92 7.87 31.11 0.24 -0.67 16 12 C 0.24 4.35 3.01 31.11 0.09 4.44 16 13 F -0.20 -4.17 17.41 44.97 0.78 -3.38 16 14 F -0.19 -5.19 15.20 44.97 0.68 -4.51 16 15 C 0.11 2.83 6.76 86.61 0.59 3.41 16 16 C 0.08 1.77 2.92 46.01 0.13 1.91 16 17 H 0.06 1.35 7.54 -2.38 -0.02 1.33 16 18 N -0.66 -19.63 5.99 -489.91 -2.93 -22.56 16 19 C 0.06 2.21 6.03 85.56 0.52 2.72 16 20 C 0.44 20.88 7.82 87.66 0.69 21.57 16 21 O -0.62 -33.76 15.78 -3.06 -0.05 -33.80 16 22 N -0.57 -29.79 5.29 -306.99 -1.62 -31.41 16 23 C -0.33 -19.06 9.68 84.04 0.81 -18.25 16 24 H 0.08 4.90 7.16 -2.91 -0.02 4.88 16 25 C -0.02 -0.83 5.50 84.92 0.47 -0.36 16 26 N -0.92 -50.53 13.05 21.66 0.28 -50.24 16 27 Si 0.99 43.20 29.55 68.60 2.03 45.23 16 28 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 29 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 30 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 31 H 0.06 0.63 8.13 -2.39 -0.02 0.61 16 32 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 33 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.11 0.45 6.84 -2.39 -0.02 0.43 16 36 H 0.08 0.85 8.09 -2.38 -0.02 0.84 16 37 H 0.14 -0.21 8.14 -2.39 -0.02 -0.23 16 38 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.15 0.05 8.14 -2.39 -0.02 0.03 16 40 H 0.05 1.68 7.85 -2.39 -0.02 1.66 16 41 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.35 10.47 8.04 -89.70 -0.72 9.75 16 43 H 0.07 2.04 8.08 -2.38 -0.02 2.03 16 44 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 45 H 0.40 19.69 7.90 -92.71 -0.73 18.96 16 46 H 0.28 14.29 8.31 -92.71 -0.77 13.52 16 Total: -1.00 -81.15 386.62 1.59 -79.57 By element: Atomic # 1 Polarization: 32.04 SS G_CDS: -0.43 Total: 31.61 kcal Atomic # 6 Polarization: 18.97 SS G_CDS: 5.55 Total: 24.52 kcal Atomic # 7 Polarization: -111.98 SS G_CDS: -6.94 Total: -118.92 kcal Atomic # 8 Polarization: -54.02 SS G_CDS: -0.09 Total: -54.11 kcal Atomic # 9 Polarization: -9.36 SS G_CDS: 1.47 Total: -7.90 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -81.15 1.59 -79.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214931577.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.565 kcal (2) G-P(sol) polarization free energy of solvation -81.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds