Wall clock time and date at job start Wed Apr 1 2020 04:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.20824 * 120.00034 * 2 1 4 4 O 1.34230 * 120.00180 * 179.97438 * 2 1 3 5 5 C 1.45192 * 117.00297 * 184.85806 * 4 2 1 6 6 H 1.09005 * 110.32741 * 17.64235 * 5 4 2 7 7 C 1.54292 * 110.36601 * 255.29345 * 5 4 2 8 8 C 1.54606 * 104.84093 * 241.15298 * 7 5 4 9 9 H 1.08999 * 112.72639 * 212.85742 * 8 7 5 10 10 C 1.53716 * 107.81006 * 88.56347 * 8 7 5 11 11 C 1.53143 * 108.88340 * 312.37780 * 10 8 7 12 12 H 1.08997 * 109.42513 * 185.90394 * 11 10 8 13 13 O 1.42896 * 109.42598 * 66.06599 * 11 10 8 14 14 C 1.35678 * 117.00316 * 83.30567 * 13 11 10 15 15 C 1.39313 * 119.81790 * 182.78741 * 14 13 11 16 16 C 1.36441 * 120.18095 * 179.75396 * 15 14 13 17 17 C 1.40830 * 119.81470 * 0.51974 * 16 15 14 18 18 C 1.41211 * 120.18204 * 179.71882 * 17 16 15 19 19 H 1.08007 * 119.99932 * 207.71447 * 18 17 16 20 20 C 1.39891 * 120.00232 * 27.70605 * 18 17 16 21 21 N 1.30878 * 119.99532 * 12.09740 * 20 18 17 22 22 Si 1.86792 * 120.00119 * 192.09121 * 20 18 17 23 23 H 1.48498 * 109.47377 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47312 * 120.00395 * 22 20 18 25 25 H 1.48502 * 109.47107 * 240.00161 * 22 20 18 26 26 C 1.40840 * 119.63882 * 359.73811 * 17 16 15 27 27 C 1.36435 * 119.81069 * 359.97438 * 26 17 16 28 28 C 1.53138 * 109.72809 * 305.98476 * 11 10 8 29 29 C 1.53706 * 108.88872 * 54.01791 * 28 11 10 30 30 H 1.08996 * 112.12497 * 171.63366 * 29 28 11 31 31 N 1.48712 * 104.22581 * 334.82425 * 8 7 5 32 32 C 1.46901 * 110.99986 * 282.48594 * 31 8 7 33 33 H 1.09007 * 109.46886 * 84.67331 * 1 2 3 34 34 H 1.09005 * 109.47440 * 204.67157 * 1 2 3 35 35 H 1.08995 * 109.47570 * 324.67437 * 1 2 3 36 36 H 1.08997 * 110.36423 * 359.97438 * 7 5 4 37 37 H 1.09004 * 110.36648 * 122.31450 * 7 5 4 38 38 H 1.08993 * 109.56755 * 192.55712 * 10 8 7 39 39 H 1.08996 * 109.66362 * 72.25501 * 10 8 7 40 40 H 1.07997 * 119.90940 * 0.02562 * 15 14 13 41 41 H 1.08005 * 120.09359 * 180.25040 * 16 15 14 42 42 H 0.96999 * 120.00212 * 180.02562 * 21 20 18 43 43 H 1.07997 * 120.09368 * 180.02562 * 26 17 16 44 44 H 1.08002 * 119.90470 * 179.97438 * 27 26 17 45 45 H 1.08998 * 109.56481 * 294.19064 * 28 11 10 46 46 H 1.09000 * 109.65814 * 173.89437 * 28 11 10 47 47 H 1.08998 * 109.46999 * 174.46873 * 32 31 8 48 48 H 1.08999 * 109.47083 * 294.46649 * 32 31 8 49 49 H 1.09002 * 109.47046 * 54.46813 * 32 31 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1111 1.0464 0.0000 4 8 2.1782 -1.1624 0.0005 5 6 3.6241 -1.0888 0.1100 6 1 3.9261 -0.1105 0.4843 7 6 4.2812 -1.3693 -1.2575 8 6 5.1454 -2.6309 -1.0302 9 1 6.0510 -2.6359 -1.6368 10 6 4.2624 -3.8603 -1.2982 11 6 2.9318 -3.6851 -0.5604 12 1 2.3408 -4.5957 -0.6576 13 8 2.2128 -2.5898 -1.1307 14 6 1.4794 -2.8467 -2.2429 15 6 0.8021 -1.8098 -2.8808 16 6 0.0665 -2.0589 -4.0026 17 6 -0.0159 -3.3704 -4.5091 18 6 -0.7798 -3.6380 -5.6661 19 1 -1.2172 -4.6149 -5.8105 20 6 -0.9703 -2.6377 -6.6253 21 7 -0.2578 -1.5408 -6.5773 22 14 -2.2413 -2.8675 -7.9747 23 1 -2.9085 -4.1835 -7.8074 24 1 -3.2545 -1.7851 -7.8900 25 1 -1.5719 -2.8162 -9.2993 26 6 0.6675 -4.4138 -3.8549 27 6 1.4036 -4.1468 -2.7376 28 6 3.1956 -3.4048 0.9218 29 6 4.1510 -2.2064 1.0393 30 1 4.2606 -1.8682 2.0696 31 7 5.4440 -2.6118 0.4265 32 6 6.5006 -1.6389 0.7346 33 1 -0.3633 0.0954 -1.0233 34 1 -0.3634 -0.9339 0.4290 35 1 -0.3634 0.8384 0.5942 36 1 3.5188 -1.5630 -2.0120 37 1 4.9078 -0.5291 -1.5568 38 1 4.7653 -4.7569 -0.9361 39 1 4.0770 -3.9525 -2.3683 40 1 0.8630 -0.8053 -2.4888 41 1 -0.4547 -1.2532 -4.4984 42 1 -0.3901 -0.8470 -7.2421 43 1 0.6098 -5.4222 -4.2372 44 1 1.9279 -4.9458 -2.2346 45 1 3.6505 -4.2811 1.3837 46 1 2.2563 -3.1735 1.4241 47 1 6.6309 -1.5739 1.8148 48 1 7.4352 -1.9596 0.2746 49 1 6.2196 -0.6612 0.3431 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225264646.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:57 Heat of formation + Delta-G solvation = -46.120891 kcal Electronic energy + Delta-G solvation = -33008.527796 eV Core-core repulsion = 28902.699791 eV Total energy + Delta-G solvation = -4105.828005 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.44454 -39.50985 -38.30597 -36.23718 -35.80510 -33.39074 -32.30715 -31.28336 -30.69572 -29.84896 -29.04269 -28.91538 -25.94143 -24.82328 -24.17682 -22.60392 -21.73932 -20.91745 -20.57664 -19.91712 -18.75286 -17.81477 -17.32207 -16.67445 -16.42439 -15.94513 -15.64364 -15.15544 -14.73158 -14.28238 -14.26352 -14.11319 -13.92740 -13.63392 -13.15819 -12.88961 -12.73870 -12.69650 -12.58559 -12.36198 -12.21720 -12.07947 -12.04826 -11.91528 -11.83165 -11.54086 -11.41873 -11.15070 -11.05244 -10.94470 -10.73070 -10.49086 -10.37584 -10.13648 -9.97755 -9.78148 -9.75131 -9.49860 -9.11954 -8.97067 -8.60067 -7.62032 -6.89586 -6.65010 -4.23870 2.56258 2.79649 2.95062 2.96884 3.10138 3.14977 3.22192 3.84727 3.98038 4.34188 4.64724 4.71045 4.74658 4.80266 5.00174 5.09159 5.22144 5.27025 5.28550 5.33900 5.35831 5.46461 5.55628 5.57015 5.60835 5.68592 5.74727 5.79836 5.91311 5.96540 6.01560 6.08751 6.14056 6.18312 6.21142 6.24361 6.34637 6.53162 6.74721 6.77246 6.94189 6.99478 7.02389 7.17530 7.26170 7.51316 7.59191 7.85476 8.03733 8.18425 8.24563 8.52710 8.72008 8.94499 9.03422 10.28909 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016168 B = 0.003579 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.390811 B = 7822.564305 C = 8604.532498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.445 3.555 3 O -0.537 6.537 4 O -0.268 6.268 5 C 0.066 3.934 6 H 0.078 0.922 7 C -0.166 4.166 8 C 0.070 3.930 9 H 0.092 0.908 10 C -0.131 4.131 11 C 0.077 3.923 12 H 0.068 0.932 13 O -0.262 6.262 14 C -0.005 4.005 15 C -0.128 4.128 16 C -0.127 4.127 17 C 0.084 3.916 18 C -0.465 4.465 19 H 0.074 0.926 20 C 0.073 3.927 21 N -0.809 5.809 22 Si 0.906 3.094 23 H -0.262 1.262 24 H -0.274 1.274 25 H -0.276 1.276 26 C -0.191 4.191 27 C -0.174 4.174 28 C -0.093 4.093 29 C 0.064 3.936 30 H 0.096 0.904 31 N -0.501 5.501 32 C 0.009 3.991 33 H 0.105 0.895 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.120 0.880 37 H 0.058 0.942 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.087 0.913 41 H 0.124 0.876 42 H 0.277 0.723 43 H 0.091 0.909 44 H 0.096 0.904 45 H 0.081 0.919 46 H 0.077 0.923 47 H 0.067 0.933 48 H 0.069 0.931 49 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.101 -0.458 13.480 15.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.291 3.709 3 O -0.428 6.428 4 O -0.182 6.182 5 C 0.009 3.991 6 H 0.096 0.904 7 C -0.204 4.204 8 C -0.038 4.038 9 H 0.110 0.890 10 C -0.169 4.169 11 C 0.020 3.980 12 H 0.086 0.914 13 O -0.179 6.179 14 C -0.048 4.048 15 C -0.147 4.147 16 C -0.146 4.146 17 C 0.082 3.918 18 C -0.496 4.496 19 H 0.092 0.908 20 C -0.142 4.142 21 N -0.436 5.436 22 Si 0.732 3.268 23 H -0.186 1.186 24 H -0.199 1.199 25 H -0.202 1.202 26 C -0.211 4.211 27 C -0.193 4.193 28 C -0.131 4.131 29 C -0.046 4.046 30 H 0.114 0.886 31 N -0.224 5.224 32 C -0.140 4.140 33 H 0.124 0.876 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.138 0.862 37 H 0.076 0.924 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.105 0.895 41 H 0.142 0.858 42 H 0.088 0.912 43 H 0.109 0.891 44 H 0.113 0.887 45 H 0.099 0.901 46 H 0.096 0.904 47 H 0.085 0.915 48 H 0.088 0.912 49 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 7.569 -0.327 13.634 15.597 hybrid contribution -0.570 0.739 -1.242 1.553 sum 6.999 0.412 12.392 14.237 Atomic orbital electron populations 1.21630 0.88166 1.04887 1.05917 1.24110 0.92421 0.82855 0.71543 1.90606 1.71025 1.33732 1.47437 1.87234 1.19992 1.30576 1.80436 1.23873 0.79198 0.99586 0.96436 0.90363 1.23445 1.00487 0.97504 0.98986 1.22962 0.97313 0.95105 0.88444 0.88996 1.22223 0.95743 0.97375 1.01550 1.22118 0.91855 0.91573 0.92467 0.91389 1.86742 1.59825 1.31628 1.39681 1.18844 1.01021 0.93466 0.91463 1.19769 1.01755 0.95467 0.97715 1.21020 1.00923 0.98319 0.94366 1.17564 0.90913 0.91155 0.92203 1.19472 1.28752 0.98382 1.02967 0.90814 1.25819 0.95166 0.94483 0.98745 1.69805 1.33705 1.06845 1.33242 0.86291 0.80869 0.79433 0.80254 1.18621 1.19906 1.20163 1.20633 1.02824 0.98521 0.99078 1.20437 1.04655 0.94525 0.99651 1.21661 0.98698 0.97400 0.95340 1.23181 0.89699 0.94311 0.97367 0.88596 1.65594 1.04475 1.44199 1.08154 1.22513 0.95491 0.94456 1.01552 0.87625 0.89063 0.88919 0.86217 0.92350 0.90736 0.90450 0.89498 0.85819 0.91213 0.89070 0.88652 0.90083 0.90413 0.91454 0.91230 0.95071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 10.20 36.01 0.37 -1.53 16 2 C 0.45 7.12 7.25 36.01 0.26 7.39 16 3 O -0.54 -10.02 16.22 -18.75 -0.30 -10.33 16 4 O -0.27 -4.17 4.74 -47.96 -0.23 -4.40 16 5 C 0.07 0.95 2.53 -25.21 -0.06 0.89 16 6 H 0.08 1.19 6.88 -51.93 -0.36 0.84 16 7 C -0.17 -2.50 5.17 -25.21 -0.13 -2.63 16 8 C 0.07 0.91 3.68 -65.49 -0.24 0.67 16 9 H 0.09 1.12 8.11 -51.93 -0.42 0.70 16 10 C -0.13 -1.79 5.18 -26.28 -0.14 -1.92 16 11 C 0.08 1.10 2.44 -26.59 -0.06 1.04 16 12 H 0.07 1.01 5.96 -51.93 -0.31 0.70 16 13 O -0.26 -4.43 2.17 -44.98 -0.10 -4.52 16 14 C 0.00 -0.10 5.80 -38.78 -0.23 -0.32 16 15 C -0.13 -2.83 9.92 -39.83 -0.40 -3.23 16 16 C -0.13 -3.16 8.61 -39.25 -0.34 -3.50 16 17 C 0.08 2.16 5.56 -106.80 -0.59 1.57 16 18 C -0.46 -12.17 9.05 -37.83 -0.34 -12.51 16 19 H 0.07 1.87 7.87 -52.48 -0.41 1.46 16 20 C 0.07 1.83 5.23 -17.34 -0.09 1.73 16 21 N -0.81 -20.87 10.83 55.54 0.60 -20.27 16 22 Si 0.91 18.76 29.58 -169.99 -5.03 13.73 16 23 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 24 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 25 H -0.28 -5.67 7.11 56.52 0.40 -5.26 16 26 C -0.19 -4.48 9.74 -39.25 -0.38 -4.86 16 27 C -0.17 -3.62 8.28 -39.83 -0.33 -3.95 16 28 C -0.09 -1.12 5.19 -26.29 -0.14 -1.26 16 29 C 0.06 0.76 3.63 -65.49 -0.24 0.52 16 30 H 0.10 1.01 8.11 -51.93 -0.42 0.59 16 31 N -0.50 -5.86 5.29 -221.11 -1.17 -7.02 16 32 C 0.01 0.09 9.46 60.07 0.57 0.65 16 33 H 0.11 1.42 7.18 -51.93 -0.37 1.05 16 34 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.12 2.19 5.20 -51.93 -0.27 1.92 16 37 H 0.06 0.86 8.01 -51.93 -0.42 0.45 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.08 1.20 7.36 -51.93 -0.38 0.82 16 40 H 0.09 1.82 5.98 -52.49 -0.31 1.50 16 41 H 0.12 3.23 6.18 -52.48 -0.32 2.91 16 42 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 43 H 0.09 2.04 8.06 -52.49 -0.42 1.62 16 44 H 0.10 1.75 5.70 -52.49 -0.30 1.45 16 45 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.08 0.93 7.83 -51.93 -0.41 0.52 16 47 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 49 H 0.03 0.33 6.88 -51.93 -0.36 -0.03 16 LS Contribution 369.54 15.07 5.57 5.57 Total: -1.00 -28.37 369.54 -10.33 -38.70 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: -7.16 Total: 9.81 kcal Atomic # 6 Polarization: -18.75 SS G_CDS: -2.51 Total: -21.26 kcal Atomic # 7 Polarization: -26.73 SS G_CDS: -0.57 Total: -27.29 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: -0.63 Total: -19.25 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.73 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -28.37 -10.33 -38.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225264646.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.422 kcal (2) G-P(sol) polarization free energy of solvation -28.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds