Wall clock time and date at job start Wed Apr 1 2020 04:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.20824 * 120.00034 * 2 1 4 4 O 1.34230 * 120.00180 * 179.97438 * 2 1 3 5 5 C 1.45192 * 117.00297 * 184.85806 * 4 2 1 6 6 H 1.09005 * 110.32741 * 17.64235 * 5 4 2 7 7 C 1.54292 * 110.36601 * 255.29345 * 5 4 2 8 8 C 1.54606 * 104.84093 * 241.15298 * 7 5 4 9 9 H 1.08999 * 112.72639 * 212.85742 * 8 7 5 10 10 C 1.53716 * 107.81006 * 88.56347 * 8 7 5 11 11 C 1.53143 * 108.88340 * 312.37780 * 10 8 7 12 12 H 1.08997 * 109.42513 * 185.90394 * 11 10 8 13 13 O 1.42896 * 109.42598 * 66.06599 * 11 10 8 14 14 C 1.35678 * 117.00316 * 83.30567 * 13 11 10 15 15 C 1.39313 * 119.81790 * 182.78741 * 14 13 11 16 16 C 1.36441 * 120.18095 * 179.75396 * 15 14 13 17 17 C 1.40830 * 119.81470 * 0.51974 * 16 15 14 18 18 C 1.41211 * 120.18204 * 179.71882 * 17 16 15 19 19 H 1.08007 * 119.99932 * 207.71447 * 18 17 16 20 20 C 1.39891 * 120.00232 * 27.70605 * 18 17 16 21 21 N 1.30878 * 119.99532 * 12.09740 * 20 18 17 22 22 Si 1.86792 * 120.00119 * 192.09121 * 20 18 17 23 23 H 1.48498 * 109.47377 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47312 * 120.00395 * 22 20 18 25 25 H 1.48502 * 109.47107 * 240.00161 * 22 20 18 26 26 C 1.40840 * 119.63882 * 359.73811 * 17 16 15 27 27 C 1.36435 * 119.81069 * 359.97438 * 26 17 16 28 28 C 1.53138 * 109.72809 * 305.98476 * 11 10 8 29 29 C 1.53706 * 108.88872 * 54.01791 * 28 11 10 30 30 H 1.08996 * 112.12497 * 171.63366 * 29 28 11 31 31 N 1.48712 * 104.22581 * 334.82425 * 8 7 5 32 32 C 1.46901 * 110.99986 * 282.48594 * 31 8 7 33 33 H 1.09007 * 109.46886 * 84.67331 * 1 2 3 34 34 H 1.09005 * 109.47440 * 204.67157 * 1 2 3 35 35 H 1.08995 * 109.47570 * 324.67437 * 1 2 3 36 36 H 1.08997 * 110.36423 * 359.97438 * 7 5 4 37 37 H 1.09004 * 110.36648 * 122.31450 * 7 5 4 38 38 H 1.08993 * 109.56755 * 192.55712 * 10 8 7 39 39 H 1.08996 * 109.66362 * 72.25501 * 10 8 7 40 40 H 1.07997 * 119.90940 * 0.02562 * 15 14 13 41 41 H 1.08005 * 120.09359 * 180.25040 * 16 15 14 42 42 H 0.96999 * 120.00212 * 180.02562 * 21 20 18 43 43 H 1.07997 * 120.09368 * 180.02562 * 26 17 16 44 44 H 1.08002 * 119.90470 * 179.97438 * 27 26 17 45 45 H 1.08998 * 109.56481 * 294.19064 * 28 11 10 46 46 H 1.09000 * 109.65814 * 173.89437 * 28 11 10 47 47 H 1.08998 * 109.46999 * 174.46873 * 32 31 8 48 48 H 1.08999 * 109.47083 * 294.46649 * 32 31 8 49 49 H 1.09002 * 109.47046 * 54.46813 * 32 31 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1111 1.0464 0.0000 4 8 2.1782 -1.1624 0.0005 5 6 3.6241 -1.0888 0.1100 6 1 3.9261 -0.1105 0.4843 7 6 4.2812 -1.3693 -1.2575 8 6 5.1454 -2.6309 -1.0302 9 1 6.0510 -2.6359 -1.6368 10 6 4.2624 -3.8603 -1.2982 11 6 2.9318 -3.6851 -0.5604 12 1 2.3408 -4.5957 -0.6576 13 8 2.2128 -2.5898 -1.1307 14 6 1.4794 -2.8467 -2.2429 15 6 0.8021 -1.8098 -2.8808 16 6 0.0665 -2.0589 -4.0026 17 6 -0.0159 -3.3704 -4.5091 18 6 -0.7798 -3.6380 -5.6661 19 1 -1.2172 -4.6149 -5.8105 20 6 -0.9703 -2.6377 -6.6253 21 7 -0.2578 -1.5408 -6.5773 22 14 -2.2413 -2.8675 -7.9747 23 1 -2.9085 -4.1835 -7.8074 24 1 -3.2545 -1.7851 -7.8900 25 1 -1.5719 -2.8162 -9.2993 26 6 0.6675 -4.4138 -3.8549 27 6 1.4036 -4.1468 -2.7376 28 6 3.1956 -3.4048 0.9218 29 6 4.1510 -2.2064 1.0393 30 1 4.2606 -1.8682 2.0696 31 7 5.4440 -2.6118 0.4265 32 6 6.5006 -1.6389 0.7346 33 1 -0.3633 0.0954 -1.0233 34 1 -0.3634 -0.9339 0.4290 35 1 -0.3634 0.8384 0.5942 36 1 3.5188 -1.5630 -2.0120 37 1 4.9078 -0.5291 -1.5568 38 1 4.7653 -4.7569 -0.9361 39 1 4.0770 -3.9525 -2.3683 40 1 0.8630 -0.8053 -2.4888 41 1 -0.4547 -1.2532 -4.4984 42 1 -0.3901 -0.8470 -7.2421 43 1 0.6098 -5.4222 -4.2372 44 1 1.9279 -4.9458 -2.2346 45 1 3.6505 -4.2811 1.3837 46 1 2.2563 -3.1735 1.4241 47 1 6.6309 -1.5739 1.8148 48 1 7.4352 -1.9596 0.2746 49 1 6.2196 -0.6612 0.3431 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225264646.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:55 Heat of formation + Delta-G solvation = -60.213417 kcal Electronic energy + Delta-G solvation = -33009.138893 eV Core-core repulsion = 28902.699791 eV Total energy + Delta-G solvation = -4106.439102 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.60562 -40.80489 -39.85258 -37.81881 -37.08239 -35.15049 -33.51301 -32.33542 -31.83126 -31.50581 -30.72300 -30.25052 -27.05290 -26.49063 -25.28001 -23.88500 -23.04177 -22.46534 -22.15071 -21.11822 -20.01559 -19.27644 -19.01415 -17.83993 -17.80824 -17.17754 -17.02961 -16.80437 -16.01037 -15.68724 -15.58485 -15.28252 -15.17000 -14.89217 -14.62981 -14.33050 -14.19385 -13.71698 -13.68919 -13.66063 -13.62074 -13.53915 -13.27129 -13.13520 -13.02050 -12.98339 -12.75768 -12.70524 -12.47216 -12.38012 -12.18168 -11.85475 -11.58894 -11.52811 -11.37560 -11.34056 -11.15273 -11.05752 -10.63181 -10.58973 -9.59275 -9.44201 -8.69024 -8.48265 -6.16684 1.04557 1.13237 1.28687 1.39720 1.53353 1.53779 1.75825 2.25280 2.81940 2.87274 3.07855 3.60223 3.67652 3.73118 3.79263 3.86589 4.08503 4.14243 4.15412 4.21065 4.32414 4.37641 4.39927 4.44631 4.47331 4.55047 4.56611 4.66431 4.77964 4.81074 4.90603 4.95494 5.00008 5.02766 5.04720 5.10259 5.16294 5.19426 5.24611 5.29187 5.35343 5.42153 5.67448 5.70932 5.77867 5.81126 6.01838 6.06637 6.15478 6.38811 6.67770 6.92258 6.96082 7.04204 7.27468 8.45763 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016168 B = 0.003579 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.390811 B = 7822.564305 C = 8604.532498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.442 3.558 3 O -0.569 6.569 4 O -0.272 6.272 5 C 0.062 3.938 6 H 0.067 0.933 7 C -0.167 4.167 8 C 0.075 3.925 9 H 0.102 0.898 10 C -0.127 4.127 11 C 0.066 3.934 12 H 0.070 0.930 13 O -0.256 6.256 14 C 0.024 3.976 15 C -0.134 4.134 16 C -0.143 4.143 17 C 0.048 3.952 18 C -0.502 4.502 19 H 0.069 0.931 20 C 0.032 3.968 21 N -0.844 5.844 22 Si 0.978 3.022 23 H -0.259 1.259 24 H -0.267 1.267 25 H -0.270 1.270 26 C -0.199 4.199 27 C -0.173 4.173 28 C -0.087 4.087 29 C 0.070 3.930 30 H 0.119 0.881 31 N -0.494 5.494 32 C 0.007 3.993 33 H 0.096 0.904 34 H 0.106 0.894 35 H 0.115 0.885 36 H 0.086 0.914 37 H 0.053 0.947 38 H 0.095 0.905 39 H 0.055 0.945 40 H 0.094 0.906 41 H 0.103 0.897 42 H 0.282 0.718 43 H 0.096 0.904 44 H 0.126 0.874 45 H 0.105 0.895 46 H 0.082 0.918 47 H 0.085 0.915 48 H 0.080 0.920 49 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.093 -1.635 15.623 17.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.289 3.711 3 O -0.462 6.462 4 O -0.186 6.186 5 C 0.005 3.995 6 H 0.086 0.914 7 C -0.206 4.206 8 C -0.034 4.034 9 H 0.120 0.880 10 C -0.165 4.165 11 C 0.009 3.991 12 H 0.088 0.912 13 O -0.172 6.172 14 C -0.020 4.020 15 C -0.153 4.153 16 C -0.163 4.163 17 C 0.046 3.954 18 C -0.533 4.533 19 H 0.088 0.912 20 C -0.180 4.180 21 N -0.473 5.473 22 Si 0.799 3.201 23 H -0.183 1.183 24 H -0.192 1.192 25 H -0.196 1.196 26 C -0.218 4.218 27 C -0.192 4.192 28 C -0.125 4.125 29 C -0.039 4.039 30 H 0.137 0.863 31 N -0.216 5.216 32 C -0.142 4.142 33 H 0.114 0.886 34 H 0.125 0.875 35 H 0.133 0.867 36 H 0.104 0.896 37 H 0.071 0.929 38 H 0.114 0.886 39 H 0.073 0.927 40 H 0.112 0.888 41 H 0.121 0.879 42 H 0.092 0.908 43 H 0.115 0.885 44 H 0.144 0.856 45 H 0.123 0.877 46 H 0.100 0.900 47 H 0.104 0.896 48 H 0.099 0.901 49 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 8.574 -1.524 15.803 18.044 hybrid contribution -0.692 1.117 -1.712 2.158 sum 7.883 -0.406 14.092 16.152 Atomic orbital electron populations 1.21708 0.85865 1.06803 1.05847 1.24705 0.93544 0.82373 0.70497 1.90590 1.71881 1.34722 1.49043 1.87182 1.20713 1.30561 1.80157 1.24015 0.78564 1.00272 0.96619 0.91444 1.23385 0.99987 0.98676 0.98505 1.22917 0.97187 0.93495 0.89758 0.88014 1.22173 0.95619 0.98554 1.00125 1.22468 0.91816 0.90707 0.94092 0.91228 1.86839 1.59232 1.33076 1.38017 1.18836 0.99073 0.92627 0.91463 1.19802 1.01808 0.96442 0.97275 1.20893 1.02159 0.97726 0.95517 1.17854 0.92368 0.92092 0.93100 1.19685 1.30514 0.98896 1.04182 0.91248 1.26605 0.96694 0.93920 1.00774 1.69882 1.35184 1.07739 1.34450 0.85223 0.78208 0.79437 0.77196 1.18287 1.19175 1.19557 1.20829 1.02883 0.98329 0.99785 1.20694 1.04010 0.95598 0.98897 1.21675 0.99186 0.98337 0.93269 1.23274 0.89638 0.93162 0.97849 0.86330 1.65611 1.04582 1.44660 1.06787 1.22607 0.95241 0.93457 1.02853 0.88570 0.87506 0.86653 0.89560 0.92879 0.88611 0.92652 0.88806 0.87920 0.90796 0.88545 0.85622 0.87669 0.89970 0.89626 0.90085 0.96120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.57 10.20 71.24 0.73 -2.84 16 2 C 0.44 13.90 7.25 71.24 0.52 14.41 16 3 O -0.57 -21.29 16.22 21.97 0.36 -20.93 16 4 O -0.27 -8.15 4.74 -43.09 -0.20 -8.36 16 5 C 0.06 1.71 2.53 31.58 0.08 1.79 16 6 H 0.07 2.01 6.88 -2.38 -0.02 1.99 16 7 C -0.17 -4.92 5.17 31.58 0.16 -4.76 16 8 C 0.07 1.78 3.68 45.35 0.17 1.95 16 9 H 0.10 2.25 8.11 -2.39 -0.02 2.23 16 10 C -0.13 -3.14 5.18 30.88 0.16 -2.98 16 11 C 0.07 1.70 2.44 30.69 0.07 1.78 16 12 H 0.07 1.83 5.96 -2.39 -0.01 1.81 16 13 O -0.26 -8.30 2.17 -64.86 -0.14 -8.45 16 14 C 0.02 0.97 5.80 22.79 0.13 1.10 16 15 C -0.13 -6.09 9.92 22.11 0.22 -5.87 16 16 C -0.14 -7.47 8.61 22.48 0.19 -7.27 16 17 C 0.05 2.55 5.56 -21.28 -0.12 2.44 16 18 C -0.50 -27.36 9.05 23.40 0.21 -27.15 16 19 H 0.07 3.68 7.87 -2.91 -0.02 3.65 16 20 C 0.03 1.63 5.23 85.24 0.45 2.08 16 21 N -0.84 -45.43 10.83 21.82 0.24 -45.19 16 22 Si 0.98 39.43 29.58 68.60 2.03 41.46 16 23 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16 24 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 25 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 26 C -0.20 -9.46 9.74 22.49 0.22 -9.24 16 27 C -0.17 -7.09 8.28 22.11 0.18 -6.91 16 28 C -0.09 -1.77 5.19 30.88 0.16 -1.61 16 29 C 0.07 1.44 3.63 45.35 0.16 1.61 16 30 H 0.12 2.00 8.11 -2.39 -0.02 1.98 16 31 N -0.49 -9.85 5.29 -853.45 -4.51 -14.36 16 32 C 0.01 0.11 9.46 127.69 1.21 1.32 16 33 H 0.10 2.60 7.18 -2.38 -0.02 2.58 16 34 H 0.11 2.26 8.14 -2.38 -0.02 2.24 16 35 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.09 3.17 5.20 -2.39 -0.01 3.16 16 37 H 0.05 1.58 8.01 -2.38 -0.02 1.56 16 38 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.05 1.63 7.36 -2.39 -0.02 1.61 16 40 H 0.09 4.04 5.98 -2.91 -0.02 4.03 16 41 H 0.10 5.71 6.18 -2.91 -0.02 5.69 16 42 H 0.28 13.87 8.30 -92.71 -0.77 13.10 16 43 H 0.10 4.38 8.06 -2.91 -0.02 4.35 16 44 H 0.13 4.33 5.70 -2.91 -0.02 4.31 16 45 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 46 H 0.08 1.64 7.83 -2.39 -0.02 1.62 16 47 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 48 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 49 H 0.02 0.39 6.88 -2.39 -0.02 0.38 16 Total: -1.00 -64.05 369.54 3.64 -60.41 By element: Atomic # 1 Polarization: 34.62 SS G_CDS: 0.97 Total: 35.58 kcal Atomic # 6 Polarization: -45.07 SS G_CDS: 4.91 Total: -40.17 kcal Atomic # 7 Polarization: -55.28 SS G_CDS: -4.28 Total: -59.55 kcal Atomic # 8 Polarization: -37.75 SS G_CDS: 0.01 Total: -37.74 kcal Atomic # 14 Polarization: 39.43 SS G_CDS: 2.03 Total: 41.46 kcal Total: -64.05 3.64 -60.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225264646.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.196 kcal (2) G-P(sol) polarization free energy of solvation -64.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds