Wall clock time and date at job start Wed Apr 1 2020 04:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46507 * 109.47336 * 2 1 4 4 C 1.34770 * 120.00307 * 179.97438 * 3 2 1 5 5 O 1.21284 * 119.99964 * 0.02562 * 4 3 2 6 6 C 1.50700 * 120.00202 * 179.97438 * 4 3 2 7 7 N 1.46901 * 109.47305 * 180.02562 * 6 4 3 8 8 C 1.46978 * 110.99767 * 290.13093 * 7 6 4 9 9 C 1.53739 * 108.13925 * 235.99538 * 8 7 6 10 10 F 1.39898 * 112.74664 * 107.46933 * 9 8 7 11 11 C 1.51387 * 109.37528 * 233.96741 * 9 8 7 12 12 O 1.21288 * 124.89691 * 273.94830 * 11 9 8 13 13 N 1.34383 * 110.20936 * 94.09861 * 11 9 8 14 14 C 1.46496 * 124.34970 * 179.97438 * 13 11 9 15 15 C 1.52998 * 109.47238 * 269.70715 * 14 13 11 16 16 C 1.50706 * 109.47348 * 179.97438 * 15 14 13 17 17 H 1.08000 * 119.99302 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00436 * 179.72505 * 16 15 14 19 19 N 1.31515 * 119.99684 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00405 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47050 * 59.99579 * 20 18 16 22 22 H 1.48496 * 109.47289 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.46492 * 299.99554 * 20 18 16 24 24 C 1.46774 * 111.30527 * 359.72557 * 13 11 9 25 25 C 1.54248 * 105.47212 * 17.58576 * 24 13 11 26 26 F 1.39900 * 113.32512 * 95.94455 * 25 24 13 27 27 C 1.46369 * 111.45343 * 167.98135 * 7 6 4 28 28 H 1.08999 * 109.47152 * 300.00467 * 1 2 3 29 29 H 1.08997 * 109.46937 * 60.00210 * 1 2 3 30 30 H 1.08998 * 109.46986 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47382 * 240.00283 * 2 1 3 32 32 H 1.09001 * 109.47379 * 119.99959 * 2 1 3 33 33 H 0.97003 * 119.99610 * 0.02562 * 3 2 1 34 34 H 1.09000 * 109.46498 * 60.00163 * 6 4 3 35 35 H 1.08997 * 109.47196 * 300.00052 * 6 4 3 36 36 H 1.09001 * 109.74273 * 116.31678 * 8 7 6 37 37 H 1.08997 * 109.74203 * 355.67699 * 8 7 6 38 38 H 1.09000 * 109.47435 * 149.70619 * 14 13 11 39 39 H 1.09002 * 109.46784 * 29.70255 * 14 13 11 40 40 H 1.09001 * 109.47671 * 59.99927 * 15 14 13 41 41 H 1.08998 * 109.47454 * 299.99925 * 15 14 13 42 42 H 0.97004 * 120.00247 * 180.02562 * 19 18 16 43 43 H 1.09004 * 110.24858 * 136.59353 * 24 13 11 44 44 H 1.09006 * 110.24300 * 258.58567 * 24 13 11 45 45 H 1.09006 * 108.99218 * 21.02587 * 27 7 6 46 46 H 1.08996 * 110.60089 * 259.97822 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 3.3434 1.6276 0.0005 5 8 4.1315 0.7057 0.0005 6 6 3.8457 3.0484 -0.0001 7 7 5.3147 3.0484 0.0001 8 6 5.8413 2.5767 1.2887 9 6 6.7756 3.6611 1.8498 10 9 6.2207 4.3430 2.9380 11 6 8.1241 3.0489 2.1635 12 8 8.4105 2.4979 3.2054 13 7 8.9592 3.2069 1.1226 14 6 10.3444 2.7311 1.0945 15 6 11.2710 3.8270 1.6249 16 6 12.6960 3.3373 1.5966 17 1 12.9183 2.3435 1.2368 18 6 13.7163 4.1596 2.0253 19 7 13.4460 5.3716 2.4584 20 14 15.4826 3.5528 1.9896 21 1 15.8601 3.2099 0.5949 22 1 16.3827 4.6190 2.4976 23 1 15.6091 2.3472 2.8474 24 6 8.3034 3.9123 0.0151 25 6 7.0641 4.5898 0.6351 26 9 7.2824 5.9251 0.9906 27 6 5.8501 4.3807 -0.2842 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.3880 2.1185 0.0004 34 1 3.4819 3.5626 0.8895 35 1 3.4829 3.5617 -0.8905 36 1 6.3979 1.6510 1.1423 37 1 5.0181 2.4051 1.9822 38 1 10.6231 2.4840 0.0702 39 1 10.4363 1.8433 1.7203 40 1 10.9925 4.0741 2.6493 41 1 11.1791 4.7148 0.9992 42 1 14.1638 5.9503 2.7597 43 1 8.9737 4.6629 -0.4037 44 1 8.0000 3.2042 -0.7561 45 1 5.0844 5.1249 -0.0649 46 1 6.1557 4.4566 -1.3276 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273698467.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:15 Heat of formation + Delta-G solvation = -141.738566 kcal Electronic energy + Delta-G solvation = -31459.187721 eV Core-core repulsion = 26827.276645 eV Total energy + Delta-G solvation = -4631.911077 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -48.42592 -47.42579 -40.82142 -39.89401 -38.03829 -35.97053 -35.55109 -33.65648 -32.23821 -31.15009 -30.04685 -29.57091 -27.26652 -26.04756 -24.93298 -23.39425 -22.33833 -21.41260 -21.19438 -20.75385 -19.60286 -17.77543 -17.47470 -16.88230 -16.59693 -16.42595 -16.27200 -15.94692 -15.58318 -15.31762 -15.20160 -15.14014 -14.63177 -14.39943 -14.25558 -14.11539 -13.93281 -13.77419 -13.70343 -13.17300 -12.99993 -12.87920 -12.82796 -12.61480 -12.32657 -12.31604 -12.22067 -12.13043 -11.85722 -11.50412 -11.25644 -10.93236 -10.86420 -10.74295 -10.16801 -10.04012 -9.93631 -9.50168 -9.48510 -9.20041 -8.90064 -8.37700 -8.26342 -6.02112 -4.06619 2.30510 2.52722 2.55488 3.04018 3.26641 3.33794 3.38228 3.40732 3.43636 3.63359 3.67390 4.10410 4.28378 4.34701 4.40992 4.46126 4.55534 4.59806 4.68855 4.76214 4.81545 4.85594 5.02793 5.25671 5.33556 5.34028 5.34363 5.43082 5.48528 5.55010 5.60895 5.69523 5.88889 6.00284 6.23496 6.28472 6.36693 6.67994 6.74175 7.07602 7.22599 7.61973 7.75120 7.88481 7.95107 8.23570 8.36325 8.99362 9.57579 11.09105 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.021809 B = 0.002407 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.594367 B =11629.160814 C =12089.287083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.115 3.885 3 N -0.736 5.736 4 C 0.511 3.489 5 O -0.513 6.513 6 C 0.030 3.970 7 N -0.502 5.502 8 C 0.054 3.946 9 C 0.045 3.955 10 F -0.164 7.164 11 C 0.510 3.490 12 O -0.500 6.500 13 N -0.597 5.597 14 C 0.128 3.872 15 C 0.010 3.990 16 C -0.524 4.524 17 H 0.058 0.942 18 C 0.059 3.941 19 N -0.891 5.891 20 Si 0.897 3.103 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.276 1.276 24 C 0.091 3.909 25 C 0.081 3.919 26 F -0.162 7.162 27 C 0.040 3.960 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.400 0.600 34 H 0.074 0.926 35 H 0.113 0.887 36 H 0.114 0.886 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.022 0.978 41 H 0.019 0.981 42 H 0.262 0.738 43 H 0.104 0.896 44 H 0.105 0.895 45 H 0.072 0.928 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.771 -3.772 -10.217 30.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.009 4.009 3 N -0.391 5.391 4 C 0.296 3.704 5 O -0.387 6.387 6 C -0.101 4.101 7 N -0.226 5.226 8 C -0.074 4.074 9 C 0.021 3.979 10 F -0.144 7.144 11 C 0.292 3.708 12 O -0.374 6.374 13 N -0.330 5.330 14 C 0.010 3.990 15 C -0.028 4.028 16 C -0.563 4.563 17 H 0.076 0.924 18 C -0.143 4.143 19 N -0.529 5.529 20 Si 0.725 3.275 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.201 1.201 24 C -0.033 4.033 25 C 0.060 3.940 26 F -0.142 7.142 27 C -0.088 4.088 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.234 0.766 34 H 0.092 0.908 35 H 0.131 0.869 36 H 0.132 0.868 37 H 0.100 0.900 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.040 0.960 41 H 0.038 0.962 42 H 0.072 0.928 43 H 0.122 0.878 44 H 0.123 0.877 45 H 0.091 0.909 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -27.694 -4.929 -9.942 29.834 hybrid contribution 0.311 1.070 0.836 1.393 sum -27.383 -3.859 -9.106 29.114 Atomic orbital electron populations 1.22005 0.94398 1.03355 1.02501 1.21294 0.94183 0.82791 1.02607 1.46019 1.07021 1.09079 1.76952 1.20449 0.82190 0.91320 0.76455 1.90762 1.54975 1.45840 1.47087 1.22266 0.88875 0.94877 1.04084 1.62464 1.06072 1.23113 1.30968 1.23034 0.98072 0.96955 0.89374 1.23062 0.95635 0.93748 0.85412 1.92927 1.85823 1.80369 1.55319 1.20184 0.85286 0.80862 0.84460 1.90764 1.78482 1.43102 1.25063 1.48378 1.13618 1.56363 1.14634 1.21988 0.75662 0.99576 1.01820 1.19434 0.93098 0.93153 0.97092 1.21002 0.91119 1.00506 1.43678 0.92378 1.25012 0.99353 0.94862 0.95064 1.69970 1.32718 1.07506 1.42744 0.86581 0.84133 0.78427 0.78406 1.20162 1.21267 1.20116 1.22678 0.92411 0.97528 0.90697 1.22662 0.98118 0.78959 0.94231 1.92964 1.95686 1.33076 1.92499 1.22922 0.94702 0.90209 1.00970 0.91956 0.91953 0.90720 0.91377 0.91433 0.76646 0.90831 0.86933 0.86781 0.89960 0.90756 0.90446 0.95995 0.96229 0.92807 0.87768 0.87706 0.90936 0.86703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.49 10.03 37.16 0.37 -0.12 16 2 C 0.11 0.66 6.39 -4.04 -0.03 0.63 16 3 N -0.74 -4.15 5.56 -60.29 -0.33 -4.49 16 4 C 0.51 4.51 7.48 -10.99 -0.08 4.42 16 5 O -0.51 -6.91 15.54 5.55 0.09 -6.82 16 6 C 0.03 0.20 4.96 -4.98 -0.02 0.18 16 7 N -0.50 -4.92 4.75 -235.52 -1.12 -6.04 16 8 C 0.05 0.69 4.99 -3.40 -0.02 0.67 16 9 C 0.05 0.71 1.77 -89.67 -0.16 0.55 16 10 F -0.16 -2.84 16.99 2.25 0.04 -2.80 16 11 C 0.51 10.15 6.83 -10.82 -0.07 10.08 16 12 O -0.50 -11.95 17.58 5.55 0.10 -11.85 16 13 N -0.60 -11.07 2.93 -172.51 -0.51 -11.58 16 14 C 0.13 2.70 5.87 -4.04 -0.02 2.67 16 15 C 0.01 0.27 5.30 -27.88 -0.15 0.12 16 16 C -0.52 -14.88 9.11 -34.44 -0.31 -15.19 16 17 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 18 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 19 N -0.89 -27.26 13.29 55.43 0.74 -26.52 16 20 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 C 0.09 1.25 6.54 -3.24 -0.02 1.23 16 25 C 0.08 1.07 1.93 -88.22 -0.17 0.90 16 26 F -0.16 -2.52 17.10 2.25 0.04 -2.48 16 27 C 0.04 0.35 5.83 -3.75 -0.02 0.33 16 28 H 0.06 0.16 8.14 -51.93 -0.42 -0.26 16 29 H 0.06 0.15 8.14 -51.93 -0.42 -0.28 16 30 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.40 1.01 8.47 -40.82 -0.35 0.66 16 34 H 0.07 0.41 7.95 -51.93 -0.41 -0.01 16 35 H 0.11 0.43 8.06 -51.93 -0.42 0.01 16 36 H 0.11 1.65 7.63 -51.93 -0.40 1.26 16 37 H 0.08 1.00 7.25 -51.93 -0.38 0.62 16 38 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 39 H 0.08 1.70 7.92 -51.93 -0.41 1.29 16 40 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.26 7.57 8.31 -40.82 -0.34 7.24 16 43 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 44 H 0.11 1.15 7.71 -51.93 -0.40 0.75 16 45 H 0.07 0.51 7.65 -51.93 -0.40 0.12 16 46 H 0.11 0.74 7.96 -51.93 -0.41 0.33 16 LS Contribution 387.03 15.07 5.83 5.83 Total: -1.00 -37.81 387.03 -7.87 -45.69 By element: Atomic # 1 Polarization: 3.06 SS G_CDS: -6.92 Total: -3.86 kcal Atomic # 6 Polarization: 8.90 SS G_CDS: -0.81 Total: 8.09 kcal Atomic # 7 Polarization: -47.40 SS G_CDS: -1.22 Total: -48.62 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: 0.18 Total: -18.68 kcal Atomic # 9 Polarization: -5.36 SS G_CDS: 0.08 Total: -5.28 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -37.81 -7.87 -45.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273698467.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.053 kcal (2) G-P(sol) polarization free energy of solvation -37.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds