Wall clock time and date at job start Wed Apr 1 2020 04:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46494 * 109.47552 * 2 1 4 4 C 1.37098 * 120.00420 * 87.95364 * 3 2 1 5 5 H 1.07999 * 120.00367 * 182.40317 * 4 3 2 6 6 C 1.38946 * 119.99887 * 2.39722 * 4 3 2 7 7 N 1.31410 * 120.00134 * 333.56326 * 6 4 3 8 8 Si 1.86800 * 120.00114 * 153.55221 * 6 4 3 9 9 H 1.48499 * 109.46892 * 95.00201 * 8 6 4 10 10 H 1.48496 * 109.47356 * 215.00278 * 8 6 4 11 11 H 1.48506 * 109.47257 * 335.00559 * 8 6 4 12 12 C 1.34780 * 119.99838 * 267.95896 * 3 2 1 13 13 O 1.21289 * 120.00194 * 5.74127 * 12 3 2 14 14 C 1.50706 * 119.99834 * 185.74545 * 12 3 2 15 15 C 1.53126 * 109.51915 * 166.04448 * 14 12 3 16 16 C 1.53038 * 109.27532 * 177.55797 * 15 14 12 17 17 N 1.46850 * 109.52351 * 300.81987 * 16 15 14 18 18 C 1.39021 * 110.99890 * 185.83882 * 17 16 15 19 19 C 1.40695 * 119.64785 * 179.97438 * 18 17 16 20 20 C 1.36001 * 120.10860 * 180.02562 * 19 18 17 21 21 C 1.40652 * 119.15312 * 359.97438 * 20 19 18 22 22 N 1.32590 * 134.01242 * 180.02562 * 21 20 19 23 23 N 1.28593 * 110.17093 * 179.97438 * 22 21 20 24 24 N 1.29030 * 110.80509 * 0.02562 * 23 22 21 25 25 N 1.36817 * 119.31823 * 0.02562 * 21 20 19 26 26 N 1.31466 * 119.65019 * 359.97438 * 18 17 16 27 27 C 1.46846 * 111.19838 * 61.74350 * 17 16 15 28 28 C 1.53043 * 109.52458 * 298.25777 * 27 17 16 29 29 H 1.08999 * 109.47186 * 65.95347 * 1 2 3 30 30 H 1.08999 * 109.47082 * 185.96125 * 1 2 3 31 31 H 1.09005 * 109.46982 * 305.95618 * 1 2 3 32 32 H 1.08997 * 109.47223 * 239.99610 * 2 1 3 33 33 H 1.09004 * 109.46953 * 119.99919 * 2 1 3 34 34 H 0.97003 * 120.00516 * 179.97438 * 7 6 4 35 35 H 1.08997 * 109.57638 * 45.89035 * 14 12 3 36 36 H 1.08996 * 109.50376 * 57.61901 * 15 14 12 37 37 H 1.09001 * 109.50035 * 297.49858 * 15 14 12 38 38 H 1.08997 * 109.45987 * 180.80536 * 16 15 14 39 39 H 1.09001 * 109.46466 * 60.83327 * 16 15 14 40 40 H 1.08003 * 119.94869 * 0.28036 * 19 18 17 41 41 H 1.08002 * 120.42961 * 180.02562 * 20 19 18 42 42 H 1.09002 * 109.46349 * 58.27298 * 27 17 16 43 43 H 1.08998 * 109.46700 * 178.23883 * 27 17 16 44 44 H 1.08997 * 109.50164 * 299.23900 * 28 27 17 45 45 H 1.09002 * 109.50650 * 179.11632 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2070 2.0416 1.1865 5 1 2.5299 3.0722 1.1855 6 6 1.9826 1.3851 2.3903 7 7 1.1362 0.3813 2.4436 8 14 2.8844 1.9292 3.9332 9 1 2.0316 2.8746 4.6975 10 1 3.1857 0.7433 4.7746 11 1 4.1526 2.6023 3.5539 12 6 2.2822 2.0026 -1.1665 13 8 2.0178 1.4577 -2.2173 14 6 2.9060 3.3745 -1.1651 15 6 3.4165 3.7058 -2.5702 16 6 3.9936 5.1232 -2.5769 17 7 2.9528 6.0787 -2.1769 18 6 3.4050 7.3877 -2.2982 19 6 2.5502 8.4534 -1.9616 20 6 2.9828 9.7376 -2.0772 21 6 4.2901 9.9817 -2.5351 22 7 4.9994 11.0802 -2.7543 23 7 6.1729 10.7726 -3.1807 24 7 6.3080 9.4924 -3.2677 25 7 5.0967 8.9236 -2.8542 26 7 4.6268 7.6167 -2.7261 27 6 2.4807 5.8094 -0.8127 28 6 1.8584 4.4124 -0.7533 29 1 -0.3633 0.4187 -0.9385 30 1 -0.3633 -1.0221 0.1067 31 1 -0.3633 0.6034 0.8319 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 0.9798 -0.0773 3.2839 35 1 3.7376 3.3969 -0.4608 36 1 2.5921 3.6452 -3.2806 37 1 4.1935 2.9951 -2.8520 38 1 4.3450 5.3675 -3.5793 39 1 4.8268 5.1794 -1.8764 40 1 1.5503 8.2512 -1.6070 41 1 2.3311 10.5595 -1.8200 42 1 3.3210 5.8623 -0.1204 43 1 1.7332 6.5521 -0.5337 44 1 1.0094 4.3630 -1.4351 45 1 1.5222 4.2067 0.2629 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318056644.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:06 Heat of formation + Delta-G solvation = 160.700425 kcal Electronic energy + Delta-G solvation = -30425.607729 eV Core-core repulsion = 26289.793329 eV Total energy + Delta-G solvation = -4135.814400 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -44.35480 -41.75029 -40.56963 -38.80422 -36.96241 -35.18214 -35.09609 -33.42295 -32.77004 -32.33275 -31.93340 -31.15379 -27.36673 -26.65453 -26.35338 -24.94704 -24.18081 -23.68734 -23.34802 -21.37044 -20.64120 -20.39339 -19.19765 -18.73225 -18.13131 -18.08918 -17.88850 -16.35808 -16.18989 -16.10400 -15.83438 -15.65598 -15.38790 -15.15137 -14.84168 -14.83042 -14.55142 -14.41716 -14.16153 -14.04683 -13.86887 -13.53192 -13.26090 -13.02467 -12.84294 -12.83272 -12.60154 -12.50551 -12.48824 -12.35126 -12.12638 -12.03451 -11.87405 -11.79583 -11.64512 -11.52859 -11.31321 -10.68999 -10.47267 -10.13044 -9.95606 -9.75712 -8.24771 -5.70640 -0.95882 -0.63488 -0.16521 0.78329 1.44144 1.56158 1.63967 1.70103 2.09354 2.10457 2.32989 2.49627 2.74479 3.00708 3.16890 3.27432 3.62899 3.67410 3.86654 3.91906 3.96392 4.00552 4.13937 4.27054 4.32121 4.41277 4.47561 4.53115 4.57698 4.60596 4.74160 4.79661 4.84938 4.87706 4.91894 4.99942 5.06126 5.18372 5.28235 5.39909 5.41931 5.49706 5.60413 5.62005 5.81790 5.90560 6.08357 6.54816 7.01842 7.21103 7.71254 8.12320 8.74229 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.017039 B = 0.002663 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.892906 B =10512.361719 C =11317.437724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.126 3.874 3 N -0.449 5.449 4 C -0.354 4.354 5 H 0.125 0.875 6 C 0.002 3.998 7 N -0.872 5.872 8 Si 0.971 3.029 9 H -0.272 1.272 10 H -0.291 1.291 11 H -0.264 1.264 12 C 0.440 3.560 13 O -0.647 6.647 14 C -0.087 4.087 15 C -0.087 4.087 16 C 0.066 3.934 17 N -0.444 5.444 18 C 0.342 3.658 19 C -0.099 4.099 20 C -0.009 4.009 21 C 0.188 3.812 22 N -0.314 5.314 23 N -0.042 5.042 24 N -0.085 5.085 25 N -0.190 5.190 26 N -0.301 5.301 27 C 0.062 3.938 28 C -0.102 4.102 29 H 0.013 0.987 30 H 0.049 0.951 31 H 0.066 0.934 32 H 0.023 0.977 33 H 0.091 0.909 34 H 0.269 0.731 35 H 0.089 0.911 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.089 0.911 39 H 0.062 0.938 40 H 0.223 0.777 41 H 0.228 0.772 42 H 0.068 0.932 43 H 0.138 0.862 44 H 0.068 0.932 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.902 14.929 -0.973 15.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.003 3.997 3 N -0.165 5.165 4 C -0.480 4.480 5 H 0.143 0.857 6 C -0.201 4.201 7 N -0.510 5.510 8 Si 0.796 3.204 9 H -0.197 1.197 10 H -0.217 1.217 11 H -0.188 1.188 12 C 0.231 3.769 13 O -0.538 6.538 14 C -0.108 4.108 15 C -0.126 4.126 16 C -0.061 4.061 17 N -0.163 5.163 18 C 0.079 3.921 19 C -0.127 4.127 20 C -0.037 4.037 21 C -0.076 4.076 22 N -0.175 5.175 23 N -0.037 5.037 24 N -0.071 5.071 25 N -0.070 5.070 26 N -0.130 5.130 27 C -0.062 4.062 28 C -0.140 4.140 29 H 0.032 0.968 30 H 0.068 0.932 31 H 0.085 0.915 32 H 0.041 0.959 33 H 0.109 0.891 34 H 0.079 0.921 35 H 0.107 0.893 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.107 0.893 39 H 0.080 0.920 40 H 0.240 0.760 41 H 0.244 0.756 42 H 0.086 0.914 43 H 0.156 0.844 44 H 0.086 0.914 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.439 14.638 -2.323 14.828 hybrid contribution -0.054 -0.774 1.230 1.454 sum -0.493 13.864 -1.094 13.916 Atomic orbital electron populations 1.21677 0.96032 1.00609 0.99032 1.21389 0.95128 0.83911 0.99292 1.44123 1.54918 1.11736 1.05738 1.20108 1.46380 0.99219 0.82334 0.85738 1.25907 0.95827 0.96663 1.01682 1.70307 1.29280 1.23744 1.27670 0.85258 0.79372 0.77681 0.78087 1.19735 1.21735 1.18781 1.20670 0.84351 0.89131 0.82793 1.90497 1.61153 1.69480 1.32623 1.21088 0.99280 0.92039 0.98398 1.21312 1.00858 0.94331 0.96066 1.22122 0.91279 0.90174 1.02510 1.59304 1.33285 0.97362 1.26362 1.21637 0.87329 0.93831 0.89265 1.22145 1.03481 0.88857 0.98237 1.21190 0.88468 1.00319 0.93732 1.24036 0.97720 0.85041 1.00832 1.75054 0.99028 1.22590 1.20861 1.78047 1.11076 1.04836 1.09718 1.82811 0.99038 1.02245 1.23052 1.53375 1.10031 1.04916 1.38649 1.76118 1.15154 0.92614 1.29076 1.22614 1.01630 0.98926 0.83079 1.21592 0.97288 0.91456 1.03686 0.96751 0.93167 0.91527 0.95858 0.89103 0.92096 0.89299 0.91647 0.91636 0.89258 0.91975 0.76008 0.75579 0.91400 0.84436 0.91355 0.88670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.11 9.55 71.98 0.69 -4.43 16 2 C 0.13 5.95 5.35 86.38 0.46 6.41 16 3 N -0.45 -20.57 2.63 -635.55 -1.67 -22.24 16 4 C -0.35 -15.26 8.45 84.04 0.71 -14.55 16 5 H 0.13 4.71 4.93 -2.91 -0.01 4.70 16 6 C 0.00 0.10 5.05 84.93 0.43 0.53 16 7 N -0.87 -40.20 8.35 21.66 0.18 -40.01 16 8 Si 0.97 34.56 29.63 68.60 2.03 36.59 16 9 H -0.27 -9.35 7.11 99.48 0.71 -8.64 16 10 H -0.29 -10.81 7.11 99.48 0.71 -10.11 16 11 H -0.26 -9.06 7.11 99.48 0.71 -8.36 16 12 C 0.44 19.23 6.89 87.66 0.60 19.83 16 13 O -0.65 -32.61 15.55 -3.06 -0.05 -32.66 16 14 C -0.09 -2.76 1.73 -11.46 -0.02 -2.78 16 15 C -0.09 -2.52 4.82 30.65 0.15 -2.37 16 16 C 0.07 1.48 4.65 86.33 0.40 1.88 16 17 N -0.44 -7.88 4.68 -701.15 -3.28 -11.16 16 18 C 0.34 5.62 6.51 133.72 0.87 6.49 16 19 C -0.10 -0.74 9.11 22.35 0.20 -0.53 16 20 C -0.01 -0.08 10.10 22.34 0.23 0.15 16 21 C 0.19 3.88 8.11 134.11 1.09 4.96 16 22 N -0.31 -8.05 12.27 -55.67 -0.68 -8.74 16 23 N -0.04 -1.26 13.36 37.02 0.49 -0.76 16 24 N -0.08 -2.59 13.98 37.02 0.52 -2.07 16 25 N -0.19 -4.95 5.36 -55.71 -0.30 -5.25 16 26 N -0.30 -7.09 10.26 -54.87 -0.56 -7.65 16 27 C 0.06 0.94 5.25 86.33 0.45 1.39 16 28 C -0.10 -2.51 5.03 30.65 0.15 -2.36 16 29 H 0.01 0.61 8.14 -2.39 -0.02 0.60 16 30 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.07 3.13 6.65 -2.38 -0.02 3.12 16 32 H 0.02 1.13 7.45 -2.39 -0.02 1.11 16 33 H 0.09 4.45 5.70 -2.38 -0.01 4.44 16 34 H 0.27 11.85 8.31 -92.71 -0.77 11.08 16 35 H 0.09 2.78 7.43 -2.39 -0.02 2.76 16 36 H 0.06 2.11 7.87 -2.39 -0.02 2.09 16 37 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.09 2.07 7.71 -2.39 -0.02 2.05 16 39 H 0.06 1.40 8.11 -2.39 -0.02 1.38 16 40 H 0.22 -0.40 7.13 -2.91 -0.02 -0.42 16 41 H 0.23 -0.19 8.06 -2.91 -0.02 -0.21 16 42 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.14 0.89 6.66 -2.39 -0.02 0.88 16 44 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.10 2.55 5.90 -2.39 -0.01 2.53 16 Total: -1.00 -67.73 360.59 4.14 -63.59 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: 1.04 Total: 15.75 kcal Atomic # 6 Polarization: 8.20 SS G_CDS: 6.42 Total: 14.62 kcal Atomic # 7 Polarization: -92.58 SS G_CDS: -5.30 Total: -97.89 kcal Atomic # 8 Polarization: -32.61 SS G_CDS: -0.05 Total: -32.66 kcal Atomic # 14 Polarization: 34.56 SS G_CDS: 2.03 Total: 36.59 kcal Total: -67.73 4.14 -63.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318056644.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 224.286 kcal (2) G-P(sol) polarization free energy of solvation -67.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 160.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds