Wall clock time and date at job start Wed Apr 1 2020 04:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45196 * 109.47707 * 2 1 4 4 C 1.34229 * 117.00401 * 180.02562 * 3 2 1 5 5 O 1.20833 * 119.99539 * 0.02562 * 4 3 2 6 6 C 1.50697 * 120.00303 * 179.97438 * 4 3 2 7 7 H 1.09000 * 109.49520 * 59.93749 * 6 4 3 8 8 C 1.53041 * 109.49766 * 299.84092 * 6 4 3 9 9 C 1.53040 * 109.53712 * 178.67832 * 8 6 4 10 10 C 1.53190 * 109.31185 * 61.36717 * 9 8 6 11 11 N 1.46934 * 108.77557 * 305.36301 * 10 9 8 12 12 C 1.34770 * 120.63083 * 233.58665 * 11 10 9 13 13 O 1.21282 * 120.00063 * 180.02562 * 12 11 10 14 14 C 1.50703 * 119.99966 * 0.02562 * 12 11 10 15 15 H 1.08998 * 109.47304 * 299.99601 * 14 12 11 16 16 C 1.50697 * 109.47062 * 60.00282 * 14 12 11 17 17 H 1.07997 * 119.99821 * 24.90264 * 16 14 12 18 18 C 1.37877 * 119.99779 * 204.90404 * 16 14 12 19 19 N 1.31516 * 120.00156 * 5.57228 * 18 16 14 20 20 Si 1.86805 * 119.99772 * 185.57148 * 18 16 14 21 21 H 1.48498 * 109.47199 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.46947 * 120.00127 * 20 18 16 23 23 H 1.48500 * 109.46994 * 239.99989 * 20 18 16 24 24 C 1.50701 * 109.47054 * 180.02562 * 14 12 11 25 25 C 1.38235 * 119.99721 * 293.20018 * 24 14 12 26 26 C 1.38240 * 119.99878 * 179.78880 * 25 24 14 27 27 C 1.38237 * 119.99937 * 0.46078 * 26 25 24 28 28 C 1.38234 * 119.99835 * 359.77220 * 27 26 25 29 29 C 1.38230 * 120.00277 * 0.02562 * 28 27 26 30 30 C 1.46922 * 118.73427 * 53.60943 * 11 10 9 31 31 H 1.09003 * 109.46698 * 300.00457 * 1 2 3 32 32 H 1.08994 * 109.47059 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.46914 * 59.99561 * 1 2 3 34 34 H 1.09001 * 109.47179 * 120.00446 * 2 1 3 35 35 H 1.09003 * 109.46698 * 239.99543 * 2 1 3 36 36 H 1.09001 * 109.45914 * 298.69967 * 8 6 4 37 37 H 1.09004 * 109.46193 * 58.66462 * 8 6 4 38 38 H 1.08996 * 109.50279 * 301.41401 * 9 8 6 39 39 H 1.08998 * 109.49731 * 181.31463 * 9 8 6 40 40 H 1.08997 * 109.58988 * 185.57298 * 10 9 8 41 41 H 1.09001 * 109.58854 * 65.14761 * 10 9 8 42 42 H 0.97001 * 119.99621 * 179.97438 * 19 18 16 43 43 H 1.07999 * 120.00342 * 359.97438 * 25 24 14 44 44 H 1.07998 * 120.00218 * 180.25119 * 26 25 24 45 45 H 1.07996 * 119.99908 * 179.78806 * 27 26 25 46 46 H 1.08002 * 120.00042 * 180.02562 * 28 27 26 47 47 H 1.07998 * 120.00301 * 179.97438 * 29 28 27 48 48 H 1.09008 * 109.58444 * 186.60630 * 30 11 10 49 49 H 1.08997 * 109.70823 * 66.25139 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3449 1.5447 -0.0005 5 8 4.0808 0.5864 -0.0015 6 6 3.9210 2.9372 -0.0012 7 1 3.5847 3.4704 0.8881 8 6 3.4525 3.6833 -1.2526 9 6 4.0102 5.1083 -1.2377 10 6 5.5411 5.0534 -1.2523 11 7 5.9949 4.2161 -0.1334 12 6 6.8936 4.6850 0.7547 13 8 7.2607 3.9838 1.6737 14 6 7.4424 6.0806 0.6060 15 1 7.9496 6.1712 -0.3545 16 6 6.3117 7.0747 0.6728 17 1 5.3983 6.8196 1.1894 18 6 6.4435 8.3098 0.0743 19 7 7.5093 8.5807 -0.6470 20 14 5.1082 9.5985 0.2881 21 1 4.0223 9.0496 1.1395 22 1 5.6833 10.8044 0.9365 23 1 4.5577 9.9662 -1.0412 24 6 8.4210 6.3568 1.7182 25 6 7.9771 6.4391 3.0248 26 6 8.8755 6.6881 4.0456 27 6 10.2162 6.8641 3.7587 28 6 10.6593 6.7865 2.4516 29 6 9.7617 6.5334 1.4314 30 6 5.4508 2.8577 -0.0017 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 -0.8899 34 1 1.8934 -0.5139 0.8899 35 1 1.8933 -0.5139 -0.8900 36 1 3.8101 3.1626 -2.1409 37 1 2.3631 3.7199 -1.2671 38 1 3.6732 5.6216 -0.3371 39 1 3.6571 5.6464 -2.1174 40 1 5.9439 6.0602 -1.1421 41 1 5.8823 4.6221 -2.1933 42 1 7.6018 9.4495 -1.0683 43 1 6.9289 6.3060 3.2485 44 1 8.5293 6.7484 5.0668 45 1 10.9175 7.0620 4.5558 46 1 11.7069 6.9236 2.2275 47 1 10.1078 6.4732 0.4101 48 1 5.7941 2.4157 0.9337 49 1 5.7846 2.2452 -0.8393 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361590182.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:34 Heat of formation + Delta-G solvation = -121.897982 kcal Electronic energy + Delta-G solvation = -31153.400424 eV Core-core repulsion = 27044.286478 eV Total energy + Delta-G solvation = -4109.113946 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.94041 -41.05206 -39.60301 -38.25415 -37.59303 -35.66851 -34.00043 -32.83905 -32.61295 -32.04237 -31.52090 -29.22872 -26.72053 -25.93579 -25.21385 -23.78544 -23.19656 -22.72672 -22.25301 -21.25007 -19.89411 -18.78943 -18.55081 -17.99439 -17.64791 -17.46265 -17.14466 -16.71864 -16.22428 -15.93029 -15.67624 -15.51248 -15.28926 -15.12428 -14.66075 -14.56858 -14.24177 -14.11015 -14.00559 -13.87001 -13.66672 -13.49780 -13.31300 -13.23549 -12.92536 -12.82025 -12.74759 -12.63669 -12.44149 -12.17743 -12.11027 -11.93548 -11.84494 -11.63656 -11.56450 -11.54201 -11.31131 -11.21856 -10.61842 -10.35032 -9.55404 -9.51704 -9.24378 -8.15588 -6.22777 0.77149 0.81315 1.04809 1.44613 1.46095 1.51317 1.58751 1.92100 2.33206 2.46856 3.13168 3.26849 3.42969 3.67403 3.73268 3.99918 4.06953 4.08339 4.19189 4.20481 4.26637 4.30382 4.32575 4.34987 4.44181 4.53958 4.60915 4.66245 4.77639 4.83588 4.88800 4.91683 4.92991 4.97750 5.00546 5.10292 5.13196 5.14036 5.33094 5.37950 5.39742 5.46105 5.46910 5.69962 5.79105 5.80571 5.86572 5.97159 6.25666 6.40835 6.58509 6.62526 6.77982 7.39191 7.45272 8.92482 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011927 B = 0.003427 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2347.093071 B = 8167.673543 C = 9583.711835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.050 3.950 3 O -0.354 6.354 4 C 0.480 3.520 5 O -0.536 6.536 6 C -0.088 4.088 7 H 0.111 0.889 8 C -0.099 4.099 9 C -0.122 4.122 10 C 0.089 3.911 11 N -0.603 5.603 12 C 0.525 3.475 13 O -0.595 6.595 14 C 0.061 3.939 15 H 0.063 0.937 16 C -0.502 4.502 17 H 0.056 0.944 18 C 0.043 3.957 19 N -0.900 5.900 20 Si 0.943 3.057 21 H -0.267 1.267 22 H -0.292 1.292 23 H -0.270 1.270 24 C -0.038 4.038 25 C -0.110 4.110 26 C -0.137 4.137 27 C -0.144 4.144 28 C -0.131 4.131 29 C -0.140 4.140 30 C 0.131 3.869 31 H 0.066 0.934 32 H 0.100 0.900 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.098 0.902 38 H 0.061 0.939 39 H 0.101 0.899 40 H 0.113 0.887 41 H 0.067 0.933 42 H 0.267 0.733 43 H 0.096 0.904 44 H 0.134 0.866 45 H 0.145 0.855 46 H 0.138 0.862 47 H 0.106 0.894 48 H 0.068 0.932 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.627 -8.614 -2.182 13.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.023 4.023 3 O -0.271 6.271 4 C 0.324 3.676 5 O -0.425 6.425 6 C -0.108 4.108 7 H 0.128 0.872 8 C -0.136 4.136 9 C -0.160 4.160 10 C -0.032 4.032 11 N -0.334 5.334 12 C 0.317 3.683 13 O -0.477 6.477 14 C 0.040 3.960 15 H 0.081 0.919 16 C -0.540 4.540 17 H 0.074 0.926 18 C -0.159 4.159 19 N -0.537 5.537 20 Si 0.769 3.231 21 H -0.191 1.191 22 H -0.219 1.219 23 H -0.195 1.195 24 C -0.039 4.039 25 C -0.128 4.128 26 C -0.155 4.155 27 C -0.162 4.162 28 C -0.149 4.149 29 C -0.158 4.158 30 C 0.008 3.992 31 H 0.085 0.915 32 H 0.119 0.881 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.116 0.884 38 H 0.080 0.920 39 H 0.119 0.881 40 H 0.131 0.869 41 H 0.085 0.915 42 H 0.076 0.924 43 H 0.114 0.886 44 H 0.152 0.848 45 H 0.163 0.837 46 H 0.156 0.844 47 H 0.124 0.876 48 H 0.086 0.914 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.179 -9.153 -1.848 13.813 hybrid contribution -0.299 0.546 0.127 0.635 sum -10.478 -8.607 -1.721 13.668 Atomic orbital electron populations 1.21822 0.90180 1.04412 1.03801 1.23344 0.97238 0.79104 1.02609 1.86511 1.23294 1.33862 1.83411 1.23616 0.80929 0.91986 0.71093 1.90661 1.61179 1.43975 1.46734 1.21389 0.95342 0.90066 1.04032 0.87153 1.21524 1.02404 0.95247 0.94434 1.21816 0.94129 0.96184 1.03839 1.22264 0.95889 0.97871 0.87217 1.47968 1.42567 1.14329 1.28570 1.21569 0.77559 0.89286 0.79923 1.90551 1.61773 1.60889 1.34500 1.17967 0.94696 0.88373 0.94958 0.91878 1.20588 0.99207 0.98746 1.35479 0.92620 1.25420 0.97299 0.99357 0.93869 1.70004 1.28901 1.23089 1.31659 0.85728 0.79816 0.79187 0.78396 1.19100 1.21864 1.19495 1.20155 0.93854 0.94723 0.95121 1.20861 0.98869 0.99936 0.93139 1.21323 0.94051 1.01067 0.99092 1.21256 0.95731 1.02345 0.96874 1.21292 0.99804 1.00758 0.93062 1.21123 0.93386 1.02161 0.99114 1.21172 0.91024 0.84136 1.02918 0.91457 0.88113 0.90952 0.91638 0.90990 0.90366 0.88377 0.92005 0.88073 0.86942 0.91468 0.92411 0.88574 0.84791 0.83693 0.84395 0.87564 0.91381 0.90724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 10.29 71.98 0.74 -0.90 16 2 C 0.05 0.90 6.19 71.98 0.45 1.34 16 3 O -0.35 -8.15 10.11 -51.41 -0.52 -8.67 16 4 C 0.48 13.19 7.26 71.24 0.52 13.71 16 5 O -0.54 -17.66 15.67 21.94 0.34 -17.31 16 6 C -0.09 -2.42 2.78 -11.46 -0.03 -2.46 16 7 H 0.11 3.11 8.14 -2.39 -0.02 3.09 16 8 C -0.10 -2.19 5.11 30.62 0.16 -2.04 16 9 C -0.12 -3.18 6.08 30.67 0.19 -2.99 16 10 C 0.09 2.97 5.88 86.36 0.51 3.48 16 11 N -0.60 -23.07 2.97 -818.90 -2.43 -25.50 16 12 C 0.53 24.36 6.98 87.66 0.61 24.98 16 13 O -0.60 -30.73 14.86 -3.03 -0.05 -30.77 16 14 C 0.06 2.94 1.51 -13.03 -0.02 2.92 16 15 H 0.06 3.25 7.08 -2.39 -0.02 3.24 16 16 C -0.50 -24.16 5.08 25.60 0.13 -24.03 16 17 H 0.06 2.72 7.81 -2.91 -0.02 2.70 16 18 C 0.04 2.08 5.23 84.65 0.44 2.52 16 19 N -0.90 -45.87 12.92 21.45 0.28 -45.60 16 20 Si 0.94 38.93 29.54 68.60 2.03 40.96 16 21 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 22 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 23 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 24 C -0.04 -1.81 4.29 -19.86 -0.09 -1.90 16 25 C -0.11 -5.06 8.35 22.27 0.19 -4.88 16 26 C -0.14 -5.33 10.05 22.27 0.22 -5.11 16 27 C -0.14 -5.09 10.05 22.27 0.22 -4.87 16 28 C -0.13 -4.95 10.05 22.27 0.22 -4.73 16 29 C -0.14 -6.25 9.67 22.27 0.22 -6.03 16 30 C 0.13 4.48 5.07 86.36 0.44 4.92 16 31 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.07 0.76 8.14 -2.39 -0.02 0.75 16 34 H 0.07 1.22 8.13 -2.39 -0.02 1.20 16 35 H 0.07 1.25 8.13 -2.39 -0.02 1.23 16 36 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.10 1.79 8.09 -2.38 -0.02 1.77 16 38 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.11 4.52 4.39 -2.39 -0.01 4.51 16 41 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.27 13.04 8.31 -92.71 -0.77 12.27 16 43 H 0.10 4.57 7.87 -2.91 -0.02 4.54 16 44 H 0.13 4.31 8.06 -2.91 -0.02 4.29 16 45 H 0.15 3.92 8.06 -2.91 -0.02 3.90 16 46 H 0.14 4.22 8.06 -2.91 -0.02 4.19 16 47 H 0.11 4.69 7.96 -2.91 -0.02 4.67 16 48 H 0.07 2.70 7.01 -2.38 -0.02 2.68 16 49 H 0.07 2.44 7.95 -2.39 -0.02 2.42 16 Total: -1.00 -64.08 399.34 5.70 -58.38 By element: Atomic # 1 Polarization: 33.64 SS G_CDS: 0.93 Total: 34.57 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: 5.11 Total: -6.06 kcal Atomic # 7 Polarization: -68.94 SS G_CDS: -2.16 Total: -71.10 kcal Atomic # 8 Polarization: -56.54 SS G_CDS: -0.22 Total: -56.76 kcal Atomic # 14 Polarization: 38.93 SS G_CDS: 2.03 Total: 40.96 kcal Total: -64.08 5.70 -58.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361590182.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.516 kcal (2) G-P(sol) polarization free energy of solvation -64.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds