Wall clock time and date at job start Wed Apr 1 2020 03:06:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.08994 * 109.55402 * 2 1
4 4 C 1.53289 * 109.51319 * 239.87038 * 2 1 3
5 5 N 1.47157 * 108.53870 * 187.11362 * 4 2 1
6 6 C 1.34775 * 121.06779 * 231.21005 * 5 4 2
7 7 O 1.21281 * 120.00218 * 179.97438 * 6 5 4
8 8 C 1.50706 * 120.00018 * 0.02562 * 6 5 4
9 9 H 1.09007 * 109.46676 * 299.99723 * 8 6 5
10 10 C 1.50697 * 109.47147 * 59.99260 * 8 6 5
11 11 H 1.08004 * 120.00219 * 26.26369 * 10 8 6
12 12 C 1.37882 * 120.00075 * 205.98048 * 10 8 6
13 13 N 1.31511 * 120.00101 * 354.43818 * 12 10 8
14 14 Si 1.86799 * 119.99739 * 174.43831 * 12 10 8
15 15 H 1.48504 * 109.47558 * 0.02562 * 14 12 10
16 16 H 1.48503 * 109.47142 * 120.00253 * 14 12 10
17 17 H 1.48510 * 109.47052 * 240.00116 * 14 12 10
18 18 C 1.50692 * 109.47522 * 180.02562 * 8 6 5
19 19 C 1.38242 * 119.99910 * 294.05618 * 18 8 6
20 20 C 1.38230 * 120.00218 * 179.76463 * 19 18 8
21 21 C 1.38240 * 119.99909 * 0.50550 * 20 19 18
22 22 C 1.38240 * 119.99553 * 359.74780 * 21 20 19
23 23 C 1.38233 * 120.00158 * 114.32393 * 18 8 6
24 24 C 1.47322 * 117.86765 * 51.48103 * 5 4 2
25 25 C 1.52865 * 108.16753 * 310.38967 * 24 5 4
26 26 C 1.54085 * 110.62081 * 286.88154 * 25 24 5
27 27 C 1.54257 * 104.00284 * 221.97114 * 26 25 24
28 28 O 1.43807 * 107.27679 * 357.56867 * 27 26 25
29 29 C 1.44523 * 107.09104 * 26.26448 * 28 27 26
30 30 O 1.41947 * 111.23701 * 50.45392 * 25 24 5
31 31 H 1.08997 * 109.46976 * 180.12680 * 1 2 3
32 32 H 1.08995 * 109.47227 * 300.12714 * 1 2 3
33 33 H 1.09000 * 109.46859 * 60.12992 * 1 2 3
34 34 H 1.09003 * 109.62364 * 67.40233 * 4 2 1
35 35 H 1.08997 * 109.62338 * 306.83186 * 4 2 1
36 36 H 0.96999 * 120.00157 * 179.97438 * 13 12 10
37 37 H 1.08006 * 119.99537 * 359.97438 * 19 18 8
38 38 H 1.07996 * 120.00151 * 180.22800 * 20 19 18
39 39 H 1.07992 * 120.00050 * 179.72514 * 21 20 19
40 40 H 1.08004 * 119.99561 * 179.97438 * 22 21 20
41 41 H 1.07994 * 120.00225 * 0.02562 * 23 18 8
42 42 H 1.09007 * 109.67397 * 70.18537 * 24 5 4
43 43 H 1.08997 * 109.67393 * 190.72484 * 24 5 4
44 44 H 1.09001 * 110.51920 * 340.59667 * 26 25 24
45 45 H 1.08994 * 110.51856 * 103.34244 * 26 25 24
46 46 H 1.09005 * 109.88139 * 116.99094 * 27 26 25
47 47 H 1.09001 * 109.87929 * 238.15039 * 27 26 25
48 48 H 1.09006 * 110.62225 * 202.28747 * 29 28 27
49 49 H 1.08996 * 110.62742 * 79.26897 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8948 1.0271 0.0000
4 6 2.0420 -0.7253 -1.2496
5 7 3.5033 -0.8639 -1.1444
6 6 4.3129 -0.4766 -2.1498
7 8 5.5147 -0.5993 -2.0423
8 6 3.7249 0.1101 -3.4073
9 1 3.0590 -0.6178 -3.8710
10 6 2.9479 1.3551 -3.0652
11 1 3.2050 1.9278 -2.1863
12 6 1.9124 1.7666 -3.8773
13 7 1.6726 1.1371 -5.0068
14 14 0.8502 3.2181 -3.3732
15 1 1.3235 3.7489 -2.0696
16 1 0.9449 4.2826 -4.4044
17 1 -0.5622 2.7771 -3.2454
18 6 4.8344 0.4573 -4.3662
19 6 5.7366 1.4550 -4.0473
20 6 6.7572 1.7702 -4.9247
21 6 6.8695 1.0948 -6.1256
22 6 5.9641 0.1007 -6.4468
23 6 4.9466 -0.2181 -5.5671
24 6 4.0524 -1.4454 0.0928
25 6 3.4222 -0.7194 1.2813
26 6 4.0024 0.7013 1.4192
27 6 4.2163 0.8715 2.9373
28 8 3.7367 -0.3259 3.5731
29 6 3.8424 -1.3929 2.6040
30 8 2.0080 -0.6770 1.1668
31 1 -0.3633 -1.0276 0.0023
32 1 -0.3633 0.5158 0.8888
33 1 -0.3633 0.5118 -0.8912
34 1 1.7924 -0.1448 -2.1379
35 1 1.5842 -1.7124 -1.3134
36 1 0.9439 1.4263 -5.5780
37 1 5.6460 1.9859 -3.1111
38 1 7.4642 2.5471 -4.6739
39 1 7.6642 1.3441 -6.8130
40 1 6.0516 -0.4266 -7.3853
41 1 4.2390 -0.9942 -5.8183
42 1 3.8114 -2.5075 0.1376
43 1 5.1342 -1.3129 0.1119
44 1 4.9512 0.7797 0.8884
45 1 3.2934 1.4412 1.0479
46 1 5.2772 1.0045 3.1496
47 1 3.6534 1.7330 3.2967
48 1 3.1617 -2.2069 2.8535
49 1 4.8687 -1.7546 2.5416
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001361614254.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:06:02
Heat of formation + Delta-G solvation = -92.743146 kcal
Electronic energy + Delta-G solvation = -32587.881345 eV
Core-core repulsion = 28480.031647 eV
Total energy + Delta-G solvation = -4107.849697 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.177 amu
Computer time = 1.05 seconds
Orbital eigenvalues (eV)
-40.68221 -39.09743 -37.93857 -37.21112 -34.28205 -33.83999 -32.90048 -31.14003
-30.60090 -29.93922 -29.26786 -27.72284 -26.12981 -25.34427 -23.65561 -22.80633
-21.78671 -21.60474 -20.84595 -19.58739 -18.39383 -17.16362 -16.97983 -16.40620
-16.07181 -15.83712 -15.60853 -15.36525 -14.81269 -14.61331 -14.42484 -14.18106
-14.05079 -13.83280 -13.67974 -13.11084 -12.77052 -12.70590 -12.43833 -12.36960
-12.29503 -12.06122 -11.79510 -11.67047 -11.61262 -11.40942 -11.31970 -11.16039
-11.10048 -11.01708 -10.87660 -10.50464 -10.30625 -10.22115 -10.05560 -9.71200
-9.62954 -9.51429 -8.86690 -8.68393 -7.98164 -7.93428 -7.61819 -6.38755
-4.44440 2.38150 2.39956 3.07369 3.18797 3.19657 3.46884 3.55482
3.62976 3.99865 4.15726 4.56494 4.76047 4.80601 4.88749 4.96847
5.05525 5.16345 5.29257 5.39484 5.46063 5.50674 5.54749 5.65468
5.71571 5.71873 5.78110 5.81559 5.85916 5.90318 5.93209 6.02815
6.09039 6.13126 6.19760 6.29050 6.32822 6.47350 6.53941 6.57719
6.79231 6.79743 6.93578 7.08070 7.10823 7.36790 7.43252 7.45421
7.51149 7.67609 7.91292 7.97722 8.11928 8.55339 9.03941 9.17545
10.68203
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.010864 B = 0.004775 C = 0.003842
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2576.639578 B = 5861.879368 C = 7285.749802
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C 0.073 3.927
3 H 0.069 0.931
4 C 0.070 3.930
5 N -0.611 5.611
6 C 0.532 3.468
7 O -0.563 6.563
8 C 0.056 3.944
9 H 0.081 0.919
10 C -0.514 4.514
11 H 0.063 0.937
12 C 0.075 3.925
13 N -0.868 5.868
14 Si 0.887 3.113
15 H -0.269 1.269
16 H -0.281 1.281
17 H -0.277 1.277
18 C -0.006 4.006
19 C -0.084 4.084
20 C -0.135 4.135
21 C -0.148 4.148
22 C -0.132 4.132
23 C -0.112 4.112
24 C 0.094 3.906
25 C 0.079 3.921
26 C -0.178 4.178
27 C 0.052 3.948
28 O -0.374 6.374
29 C 0.065 3.935
30 O -0.362 6.362
31 H 0.062 0.938
32 H 0.061 0.939
33 H 0.077 0.923
34 H 0.146 0.854
35 H 0.057 0.943
36 H 0.268 0.732
37 H 0.109 0.891
38 H 0.105 0.895
39 H 0.104 0.896
40 H 0.105 0.895
41 H 0.110 0.890
42 H 0.067 0.933
43 H 0.097 0.903
44 H 0.086 0.914
45 H 0.087 0.913
46 H 0.058 0.942
47 H 0.082 0.918
48 H 0.102 0.898
49 H 0.077 0.923
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.728 -2.881 7.827 8.372
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C 0.016 3.984
3 H 0.087 0.913
4 C -0.053 4.053
5 N -0.345 5.345
6 C 0.324 3.676
7 O -0.441 6.441
8 C 0.035 3.965
9 H 0.098 0.902
10 C -0.552 4.552
11 H 0.081 0.919
12 C -0.131 4.131
13 N -0.502 5.502
14 Si 0.714 3.286
15 H -0.193 1.193
16 H -0.206 1.206
17 H -0.203 1.203
18 C -0.007 4.007
19 C -0.102 4.102
20 C -0.154 4.154
21 C -0.166 4.166
22 C -0.151 4.151
23 C -0.130 4.130
24 C -0.030 4.030
25 C 0.038 3.962
26 C -0.216 4.216
27 C -0.025 4.025
28 O -0.293 6.293
29 C -0.012 4.012
30 O -0.282 6.282
31 H 0.081 0.919
32 H 0.080 0.920
33 H 0.096 0.904
34 H 0.163 0.837
35 H 0.075 0.925
36 H 0.078 0.922
37 H 0.127 0.873
38 H 0.123 0.877
39 H 0.122 0.878
40 H 0.124 0.876
41 H 0.128 0.872
42 H 0.085 0.915
43 H 0.115 0.885
44 H 0.105 0.895
45 H 0.105 0.895
46 H 0.076 0.924
47 H 0.100 0.900
48 H 0.120 0.880
49 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges 1.044 -3.041 8.041 8.660
hybrid contribution -0.439 1.079 -0.387 1.228
sum 0.605 -1.962 7.653 7.924
Atomic orbital electron populations
1.21693 0.92615 1.02798 1.02673 1.22559 0.94992 0.96227 0.84658
0.91341 1.22857 0.79415 1.01151 1.01845 1.48030 1.07263 1.63297
1.15872 1.21650 0.85955 0.74819 0.85164 1.90581 1.15398 1.56389
1.81776 1.18092 0.92652 0.98278 0.87455 0.90160 1.20640 1.14877
1.08893 1.10779 0.91855 1.24944 0.97156 0.96588 0.94391 1.69945
1.29860 1.40174 1.10249 0.86590 0.80321 0.82554 0.79181 1.19319
1.20633 1.20291 1.19928 0.93208 0.92993 0.94600 1.20780 0.94003
0.96926 0.98539 1.20929 0.98977 1.00349 0.95103 1.20787 0.99974
0.98542 0.97340 1.20891 0.96355 0.98756 0.99061 1.20932 0.97388
1.00087 0.94616 1.21961 1.00152 0.96811 0.84051 1.22718 0.83084
0.94763 0.95638 1.23455 1.03168 0.98221 0.96779 1.23149 0.98896
0.88664 0.91764 1.88890 1.85975 1.17778 1.36614 1.23406 1.00978
0.91242 0.85568 1.87763 1.18589 1.77774 1.44049 0.91879 0.92029
0.90416 0.83699 0.92497 0.92217 0.87313 0.87712 0.87792 0.87644
0.87166 0.91484 0.88487 0.89520 0.89453 0.92369 0.89970 0.87963
0.90530
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.89 9.57 37.16 0.36 -1.53 16
2 C 0.07 1.15 3.17 -26.58 -0.08 1.07 16
3 H 0.07 1.16 6.28 -51.93 -0.33 0.84 16
4 C 0.07 1.20 5.41 -3.53 -0.02 1.18 16
5 N -0.61 -11.15 2.94 -172.40 -0.51 -11.66 16
6 C 0.53 11.38 6.99 -10.98 -0.08 11.31 16
7 O -0.56 -13.16 14.90 5.56 0.08 -13.07 16
8 C 0.06 1.26 1.45 -94.08 -0.14 1.13 16
9 H 0.08 1.91 7.28 -51.93 -0.38 1.54 16
10 C -0.51 -11.83 5.13 -34.44 -0.18 -12.00 16
11 H 0.06 1.49 7.82 -52.48 -0.41 1.08 16
12 C 0.08 1.76 5.18 -17.82 -0.09 1.67 16
13 N -0.87 -21.43 13.00 55.43 0.72 -20.71 16
14 Si 0.89 18.51 29.54 -169.99 -5.02 13.49 16
15 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16
16 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16
17 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16
18 C -0.01 -0.14 4.30 -104.63 -0.45 -0.59 16
19 C -0.08 -1.87 8.30 -39.58 -0.33 -2.19 16
20 C -0.14 -2.66 10.05 -39.58 -0.40 -3.06 16
21 C -0.15 -2.76 10.05 -39.58 -0.40 -3.15 16
22 C -0.13 -2.55 10.05 -39.58 -0.40 -2.95 16
23 C -0.11 -2.42 9.67 -39.58 -0.38 -2.80 16
24 C 0.09 1.46 5.26 -3.66 -0.02 1.45 16
25 C 0.08 1.15 0.94 -89.46 -0.08 1.06 16
26 C -0.18 -2.57 6.05 -25.51 -0.15 -2.72 16
27 C 0.05 0.66 7.71 37.82 0.29 0.95 16
28 O -0.37 -5.31 11.53 -35.23 -0.41 -5.72 16
29 C 0.07 0.82 6.88 37.82 0.26 1.08 16
30 O -0.36 -5.68 9.92 -35.23 -0.35 -6.02 16
31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16
32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16
33 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16
34 H 0.15 2.82 4.40 -51.93 -0.23 2.59 16
35 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16
36 H 0.27 6.37 8.31 -40.82 -0.34 6.03 16
37 H 0.11 2.43 7.90 -52.48 -0.41 2.01 16
38 H 0.10 1.77 8.06 -52.49 -0.42 1.34 16
39 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16
40 H 0.11 1.73 8.06 -52.48 -0.42 1.30 16
41 H 0.11 2.30 7.95 -52.49 -0.42 1.88 16
42 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16
43 H 0.10 1.57 6.87 -51.93 -0.36 1.21 16
44 H 0.09 1.31 7.67 -51.93 -0.40 0.91 16
45 H 0.09 1.35 6.11 -51.93 -0.32 1.03 16
46 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16
47 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16
48 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16
49 H 0.08 0.81 8.01 -51.93 -0.42 0.40 16
LS Contribution 387.21 15.07 5.84 5.84
Total: -1.00 -27.42 387.21 -9.38 -36.81
By element:
Atomic # 1 Polarization: 18.62 SS G_CDS: -7.45 Total: 11.17 kcal
Atomic # 6 Polarization: -7.83 SS G_CDS: -2.29 Total: -10.12 kcal
Atomic # 7 Polarization: -32.58 SS G_CDS: 0.21 Total: -32.37 kcal
Atomic # 8 Polarization: -24.14 SS G_CDS: -0.67 Total: -24.82 kcal
Atomic # 14 Polarization: 18.51 SS G_CDS: -5.02 Total: 13.49 kcal
Total LS contribution 5.84 Total: 5.84 kcal
Total: -27.42 -9.38 -36.81 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001361614254.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -55.936 kcal
(2) G-P(sol) polarization free energy of solvation -27.423 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.359 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.384 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.807 kcal
(6) G-S(sol) free energy of system = (1) + (5) -92.743 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.05 seconds