Wall clock time and date at job start Wed Apr 1 2020 03:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.47190 * 2 1 4 4 C 1.50693 * 109.47058 * 120.00237 * 2 1 3 5 5 H 1.08005 * 120.00291 * 114.36412 * 4 2 1 6 6 C 1.37881 * 120.00259 * 294.36743 * 4 2 1 7 7 N 1.31514 * 120.00212 * 156.61898 * 6 4 2 8 8 Si 1.86795 * 119.99775 * 336.88788 * 6 4 2 9 9 H 1.48501 * 109.47165 * 179.72704 * 8 6 4 10 10 H 1.48500 * 109.47318 * 299.72681 * 8 6 4 11 11 H 1.48500 * 109.47076 * 59.72783 * 8 6 4 12 12 N 1.46498 * 109.46908 * 240.00405 * 2 1 3 13 13 C 1.34776 * 119.99973 * 85.00105 * 12 2 1 14 14 O 1.21275 * 120.00093 * 0.02562 * 13 12 2 15 15 C 1.50701 * 119.99964 * 179.97438 * 13 12 2 16 16 C 1.53130 * 109.52242 * 299.68253 * 15 13 12 17 17 C 1.53035 * 109.27702 * 182.43872 * 16 15 13 18 18 N 1.46843 * 109.52377 * 59.18081 * 17 16 15 19 19 C 1.39028 * 111.00393 * 174.15706 * 18 17 16 20 20 C 1.40696 * 119.64539 * 304.21142 * 19 18 17 21 21 C 1.36008 * 120.10331 * 179.97438 * 20 19 18 22 22 C 1.40655 * 119.15297 * 359.97438 * 21 20 19 23 23 N 1.32587 * 134.00662 * 180.02562 * 22 21 20 24 24 N 1.28591 * 110.16405 * 179.97438 * 23 22 21 25 25 N 1.29026 * 110.81290 * 359.97438 * 24 23 22 26 26 N 1.36810 * 119.31885 * 0.02562 * 22 21 20 27 27 N 1.31465 * 119.64682 * 123.93667 * 19 18 17 28 28 C 1.46851 * 111.19744 * 298.25790 * 18 17 16 29 29 C 1.53033 * 109.52513 * 61.74350 * 28 18 17 30 30 H 1.08994 * 109.47507 * 173.10064 * 1 2 3 31 31 H 1.09003 * 109.46967 * 293.10580 * 1 2 3 32 32 H 1.09007 * 109.46955 * 53.09808 * 1 2 3 33 33 H 0.97003 * 119.99433 * 355.20223 * 7 6 4 34 34 H 0.96999 * 119.99673 * 264.99382 * 12 2 1 35 35 H 1.09002 * 109.52485 * 59.87110 * 15 13 12 36 36 H 1.08994 * 109.50180 * 302.38461 * 16 15 13 37 37 H 1.08997 * 109.49817 * 62.49885 * 16 15 13 38 38 H 1.09000 * 109.46328 * 299.16207 * 17 16 15 39 39 H 1.08999 * 109.45931 * 179.19703 * 17 16 15 40 40 H 1.07997 * 119.94922 * 359.97438 * 20 19 18 41 41 H 1.08000 * 120.41989 * 180.02562 * 21 20 19 42 42 H 1.08998 * 109.46095 * 301.72429 * 28 18 17 43 43 H 1.09011 * 109.45906 * 181.75641 * 28 18 17 44 44 H 1.08996 * 109.50699 * 180.88076 * 29 28 18 45 45 H 1.09001 * 109.50656 * 60.76153 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.5761 -1.6386 1.1339 6 6 1.7976 -0.1756 2.4794 7 7 1.8026 -0.9539 3.5395 8 14 1.4651 1.6531 2.6649 9 1 1.2392 1.9724 4.0975 10 1 2.6331 2.4218 2.1647 11 1 0.2588 2.0190 1.8800 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0181 -2.3571 14 8 1.8590 1.1587 -2.4114 15 6 2.6498 -0.7283 -3.5875 16 6 4.0569 -1.2724 -3.3252 17 6 4.5861 -1.9391 -4.5970 18 7 4.6171 -0.9578 -5.6890 19 6 5.2149 -1.4939 -6.8239 20 6 6.5136 -2.0285 -6.7398 21 6 7.1071 -2.5558 -7.8441 22 6 6.4060 -2.5586 -9.0635 23 7 6.6883 -2.9831 -10.2874 24 7 5.6977 -2.7555 -11.0750 25 7 4.7295 -2.1850 -10.4410 26 7 5.1446 -2.0311 -9.1121 27 7 4.5585 -1.5009 -7.9630 28 6 3.2702 -0.4563 -5.9906 29 6 2.7018 0.2546 -4.7604 30 1 -0.3634 -1.0201 -0.1234 31 1 -0.3633 0.4033 0.9453 32 1 -0.3633 0.6171 -0.8218 33 1 1.9020 -1.9133 3.4363 34 1 2.2490 -1.6317 -1.1527 35 1 1.9794 -1.5522 -3.8321 36 1 4.7172 -0.4526 -3.0422 37 1 4.0193 -2.0049 -2.5189 38 1 3.9330 -2.7674 -4.8715 39 1 5.5934 -2.3150 -4.4178 40 1 7.0401 -2.0202 -5.7969 41 1 8.1036 -2.9679 -7.7853 42 1 2.6233 -1.2916 -6.2586 43 1 3.3219 0.2448 -6.8237 44 1 1.6960 0.6131 -4.9796 45 1 3.3407 1.0985 -4.5001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362080182.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:27 Heat of formation + Delta-G solvation = 154.816065 kcal Electronic energy + Delta-G solvation = -29518.288434 eV Core-core repulsion = 25382.218869 eV Total energy + Delta-G solvation = -4136.069565 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.63306 -41.13255 -39.55501 -38.04143 -35.16044 -34.53851 -34.41530 -32.58322 -32.08507 -31.51796 -31.20978 -29.59241 -26.62252 -25.73792 -24.93080 -24.12393 -23.48254 -22.99607 -21.50251 -20.20963 -19.77871 -19.57582 -18.55170 -18.05121 -17.69646 -17.37819 -16.49961 -15.76154 -15.44742 -15.29691 -15.10308 -14.85433 -14.39811 -14.16956 -14.13331 -13.72145 -13.66980 -13.34833 -13.22675 -13.11000 -12.78125 -12.66444 -12.26037 -12.24940 -11.96438 -11.79536 -11.66783 -11.59339 -11.46249 -11.29496 -11.20865 -10.95515 -10.78520 -10.55987 -10.18820 -9.91110 -9.89613 -9.39405 -9.26791 -9.21496 -8.37653 -8.27691 -6.67342 -4.28981 -0.51349 -0.00042 0.49541 1.53147 2.20394 2.61036 3.04193 3.08336 3.27944 3.34618 3.40162 3.55028 3.68139 3.76080 4.10195 4.21473 4.33643 4.37326 4.51572 4.54863 4.64125 4.73435 4.75756 4.81294 4.88898 5.00241 5.03749 5.04546 5.08327 5.18123 5.27217 5.37641 5.52045 5.72762 5.86544 5.97889 6.07171 6.19102 6.31390 6.47505 6.60258 6.64641 6.88804 7.20428 7.30165 7.58351 7.80617 8.15998 8.37220 8.61268 8.86696 9.37023 10.70840 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.030713 B = 0.001975 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.437599 B =14174.460713 C =14622.024108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.243 3.757 3 H 0.040 0.960 4 C -0.625 4.625 5 H 0.062 0.938 6 C 0.045 3.955 7 N -0.889 5.889 8 Si 1.033 2.967 9 H -0.283 1.283 10 H -0.280 1.280 11 H -0.274 1.274 12 N -0.701 5.701 13 C 0.507 3.493 14 O -0.553 6.553 15 C -0.115 4.115 16 C -0.110 4.110 17 C 0.057 3.943 18 N -0.446 5.446 19 C 0.339 3.661 20 C -0.119 4.119 21 C -0.015 4.015 22 C 0.189 3.811 23 N -0.295 5.295 24 N -0.025 5.025 25 N -0.048 5.048 26 N -0.179 5.179 27 N -0.264 5.264 28 C 0.053 3.947 29 C -0.098 4.098 30 H 0.042 0.958 31 H 0.058 0.942 32 H 0.028 0.972 33 H 0.271 0.729 34 H 0.392 0.608 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.061 0.939 39 H 0.097 0.903 40 H 0.177 0.823 41 H 0.182 0.818 42 H 0.062 0.938 43 H 0.096 0.904 44 H 0.086 0.914 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.907 -5.016 -18.850 21.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.140 3.860 3 H 0.058 0.942 4 C -0.662 4.662 5 H 0.080 0.920 6 C -0.162 4.162 7 N -0.520 5.520 8 Si 0.860 3.140 9 H -0.208 1.208 10 H -0.207 1.207 11 H -0.200 1.200 12 N -0.348 5.348 13 C 0.291 3.709 14 O -0.432 6.432 15 C -0.136 4.136 16 C -0.148 4.148 17 C -0.068 4.068 18 N -0.166 5.166 19 C 0.075 3.925 20 C -0.148 4.148 21 C -0.044 4.044 22 C -0.076 4.076 23 N -0.155 5.155 24 N -0.019 5.019 25 N -0.034 5.034 26 N -0.060 5.060 27 N -0.091 5.091 28 C -0.073 4.073 29 C -0.136 4.136 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.048 0.952 33 H 0.081 0.919 34 H 0.225 0.775 35 H 0.111 0.889 36 H 0.106 0.894 37 H 0.108 0.892 38 H 0.080 0.920 39 H 0.115 0.885 40 H 0.194 0.806 41 H 0.200 0.800 42 H 0.080 0.920 43 H 0.114 0.886 44 H 0.104 0.896 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 8.460 -2.547 -19.391 21.309 hybrid contribution 0.717 -2.224 -0.210 2.346 sum 9.177 -4.772 -19.601 22.163 Atomic orbital electron populations 1.22427 0.98976 0.99887 1.00176 1.18984 0.90475 0.94145 0.82439 0.94192 1.21980 1.42145 1.11141 0.90984 0.92005 1.25635 0.92955 1.05882 0.91774 1.70879 1.42854 1.06426 1.31889 0.84180 0.77766 0.75710 0.76309 1.20846 1.20650 1.20002 1.46313 1.64875 1.13648 1.10003 1.20302 0.78543 0.87448 0.84598 1.90660 1.51400 1.16062 1.85089 1.21467 0.97649 0.99495 0.95022 1.21652 0.95538 1.01841 0.95740 1.22479 1.03220 0.91891 0.89209 1.59281 1.23371 1.31828 1.02137 1.21262 0.92548 0.88390 0.90300 1.21679 0.93908 0.97720 1.01463 1.20587 1.01154 0.96472 0.86213 1.23297 0.87934 0.99060 0.97315 1.75177 1.20087 1.22997 0.97268 1.78107 0.94783 1.07497 1.21523 1.82930 1.18291 1.21241 0.80963 1.53450 1.10142 1.34852 1.07606 1.76109 1.19642 1.22666 0.90719 1.22358 0.84868 1.00395 0.99668 1.21464 1.02771 0.97993 0.91354 0.93856 0.92273 0.95245 0.91947 0.77528 0.88860 0.89442 0.89173 0.92034 0.88516 0.80612 0.80047 0.91989 0.88591 0.89559 0.89633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.37 9.20 37.16 0.34 -3.03 16 2 C 0.24 5.47 2.16 -69.09 -0.15 5.32 16 3 H 0.04 0.99 6.15 -51.93 -0.32 0.67 16 4 C -0.63 -15.90 8.95 -34.44 -0.31 -16.20 16 5 H 0.06 1.63 7.96 -52.48 -0.42 1.21 16 6 C 0.05 1.22 5.19 -17.82 -0.09 1.13 16 7 N -0.89 -25.31 13.70 55.43 0.76 -24.55 16 8 Si 1.03 24.10 26.44 -169.99 -4.50 19.60 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.27 -6.07 6.14 56.52 0.35 -5.72 16 12 N -0.70 -12.51 4.98 -54.94 -0.27 -12.78 16 13 C 0.51 8.29 7.12 -10.98 -0.08 8.21 16 14 O -0.55 -11.31 15.64 5.56 0.09 -11.22 16 15 C -0.11 -1.21 2.59 -91.64 -0.24 -1.45 16 16 C -0.11 -0.87 5.26 -26.65 -0.14 -1.01 16 17 C 0.06 0.31 5.25 -3.84 -0.02 0.29 16 18 N -0.45 -3.12 4.68 -172.97 -0.81 -3.93 16 19 C 0.34 2.44 6.51 -155.19 -1.01 1.43 16 20 C -0.12 -0.49 9.11 -39.45 -0.36 -0.85 16 21 C -0.02 -0.07 10.10 -39.47 -0.40 -0.47 16 22 C 0.19 1.81 8.11 -156.38 -1.27 0.54 16 23 N -0.30 -3.46 12.27 31.05 0.38 -3.08 16 24 N -0.02 -0.33 13.36 60.35 0.81 0.48 16 25 N -0.05 -0.64 13.98 60.35 0.84 0.21 16 26 N -0.18 -2.07 5.36 31.04 0.17 -1.91 16 27 N -0.26 -2.67 10.26 31.31 0.32 -2.35 16 28 C 0.05 0.44 4.65 -3.83 -0.02 0.42 16 29 C -0.10 -0.99 4.68 -26.65 -0.12 -1.11 16 30 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.06 1.33 5.47 -51.93 -0.28 1.04 16 32 H 0.03 0.60 8.14 -51.92 -0.42 0.18 16 33 H 0.27 7.59 8.73 -40.82 -0.36 7.23 16 34 H 0.39 6.02 8.01 -40.82 -0.33 5.69 16 35 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.09 0.67 7.66 -51.93 -0.40 0.27 16 38 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 39 H 0.10 0.27 6.66 -51.93 -0.35 -0.08 16 40 H 0.18 0.11 7.14 -52.49 -0.37 -0.26 16 41 H 0.18 0.19 8.06 -52.49 -0.42 -0.24 16 42 H 0.06 0.50 8.11 -51.93 -0.42 0.08 16 43 H 0.10 0.84 7.71 -51.92 -0.40 0.44 16 44 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.09 1.00 8.04 -51.93 -0.42 0.58 16 LS Contribution 368.47 15.07 5.55 5.55 Total: -1.00 -33.81 368.47 -6.40 -40.21 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -5.87 Total: 0.56 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: -3.86 Total: -6.78 kcal Atomic # 7 Polarization: -50.11 SS G_CDS: 2.19 Total: -47.92 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.09 Total: -11.22 kcal Atomic # 14 Polarization: 24.10 SS G_CDS: -4.50 Total: 19.60 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.81 -6.40 -40.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362080182.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.024 kcal (2) G-P(sol) polarization free energy of solvation -33.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 161.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 154.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds