Wall clock time and date at job start Wed Apr 1 2020 03:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.47190 * 2 1 4 4 C 1.50693 * 109.47058 * 120.00237 * 2 1 3 5 5 H 1.08005 * 120.00291 * 114.36412 * 4 2 1 6 6 C 1.37881 * 120.00259 * 294.36743 * 4 2 1 7 7 N 1.31514 * 120.00212 * 156.61898 * 6 4 2 8 8 Si 1.86795 * 119.99775 * 336.88788 * 6 4 2 9 9 H 1.48501 * 109.47165 * 179.72704 * 8 6 4 10 10 H 1.48500 * 109.47318 * 299.72681 * 8 6 4 11 11 H 1.48500 * 109.47076 * 59.72783 * 8 6 4 12 12 N 1.46498 * 109.46908 * 240.00405 * 2 1 3 13 13 C 1.34776 * 119.99973 * 85.00105 * 12 2 1 14 14 O 1.21275 * 120.00093 * 0.02562 * 13 12 2 15 15 C 1.50701 * 119.99964 * 179.97438 * 13 12 2 16 16 C 1.53130 * 109.52242 * 299.68253 * 15 13 12 17 17 C 1.53035 * 109.27702 * 182.43872 * 16 15 13 18 18 N 1.46843 * 109.52377 * 59.18081 * 17 16 15 19 19 C 1.39028 * 111.00393 * 174.15706 * 18 17 16 20 20 C 1.40696 * 119.64539 * 304.21142 * 19 18 17 21 21 C 1.36008 * 120.10331 * 179.97438 * 20 19 18 22 22 C 1.40655 * 119.15297 * 359.97438 * 21 20 19 23 23 N 1.32587 * 134.00662 * 180.02562 * 22 21 20 24 24 N 1.28591 * 110.16405 * 179.97438 * 23 22 21 25 25 N 1.29026 * 110.81290 * 359.97438 * 24 23 22 26 26 N 1.36810 * 119.31885 * 0.02562 * 22 21 20 27 27 N 1.31465 * 119.64682 * 123.93667 * 19 18 17 28 28 C 1.46851 * 111.19744 * 298.25790 * 18 17 16 29 29 C 1.53033 * 109.52513 * 61.74350 * 28 18 17 30 30 H 1.08994 * 109.47507 * 173.10064 * 1 2 3 31 31 H 1.09003 * 109.46967 * 293.10580 * 1 2 3 32 32 H 1.09007 * 109.46955 * 53.09808 * 1 2 3 33 33 H 0.97003 * 119.99433 * 355.20223 * 7 6 4 34 34 H 0.96999 * 119.99673 * 264.99382 * 12 2 1 35 35 H 1.09002 * 109.52485 * 59.87110 * 15 13 12 36 36 H 1.08994 * 109.50180 * 302.38461 * 16 15 13 37 37 H 1.08997 * 109.49817 * 62.49885 * 16 15 13 38 38 H 1.09000 * 109.46328 * 299.16207 * 17 16 15 39 39 H 1.08999 * 109.45931 * 179.19703 * 17 16 15 40 40 H 1.07997 * 119.94922 * 359.97438 * 20 19 18 41 41 H 1.08000 * 120.41989 * 180.02562 * 21 20 19 42 42 H 1.08998 * 109.46095 * 301.72429 * 28 18 17 43 43 H 1.09011 * 109.45906 * 181.75641 * 28 18 17 44 44 H 1.08996 * 109.50699 * 180.88076 * 29 28 18 45 45 H 1.09001 * 109.50656 * 60.76153 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.5761 -1.6386 1.1339 6 6 1.7976 -0.1756 2.4794 7 7 1.8026 -0.9539 3.5395 8 14 1.4651 1.6531 2.6649 9 1 1.2392 1.9724 4.0975 10 1 2.6331 2.4218 2.1647 11 1 0.2588 2.0190 1.8800 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0181 -2.3571 14 8 1.8590 1.1587 -2.4114 15 6 2.6498 -0.7283 -3.5875 16 6 4.0569 -1.2724 -3.3252 17 6 4.5861 -1.9391 -4.5970 18 7 4.6171 -0.9578 -5.6890 19 6 5.2149 -1.4939 -6.8239 20 6 6.5136 -2.0285 -6.7398 21 6 7.1071 -2.5558 -7.8441 22 6 6.4060 -2.5586 -9.0635 23 7 6.6883 -2.9831 -10.2874 24 7 5.6977 -2.7555 -11.0750 25 7 4.7295 -2.1850 -10.4410 26 7 5.1446 -2.0311 -9.1121 27 7 4.5585 -1.5009 -7.9630 28 6 3.2702 -0.4563 -5.9906 29 6 2.7018 0.2546 -4.7604 30 1 -0.3634 -1.0201 -0.1234 31 1 -0.3633 0.4033 0.9453 32 1 -0.3633 0.6171 -0.8218 33 1 1.9020 -1.9133 3.4363 34 1 2.2490 -1.6317 -1.1527 35 1 1.9794 -1.5522 -3.8321 36 1 4.7172 -0.4526 -3.0422 37 1 4.0193 -2.0049 -2.5189 38 1 3.9330 -2.7674 -4.8715 39 1 5.5934 -2.3150 -4.4178 40 1 7.0401 -2.0202 -5.7969 41 1 8.1036 -2.9679 -7.7853 42 1 2.6233 -1.2916 -6.2586 43 1 3.3219 0.2448 -6.8237 44 1 1.6960 0.6131 -4.9796 45 1 3.3407 1.0985 -4.5001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362080182.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:25 Heat of formation + Delta-G solvation = 129.048944 kcal Electronic energy + Delta-G solvation = -29519.405780 eV Core-core repulsion = 25382.218869 eV Total energy + Delta-G solvation = -4137.186912 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -44.37835 -41.81632 -40.70135 -38.87654 -36.81528 -35.29905 -35.13202 -34.42059 -32.79725 -32.32752 -31.97667 -31.08305 -27.40924 -26.84864 -26.36428 -24.95372 -24.15209 -23.70680 -22.80509 -21.43396 -20.85507 -20.43057 -19.72830 -19.13712 -18.42955 -18.13194 -17.80104 -17.01500 -16.43372 -16.03584 -15.77454 -15.68357 -15.36379 -15.14096 -14.98074 -14.86401 -14.70987 -14.47310 -14.39057 -14.24089 -14.00394 -13.89172 -13.49090 -13.28553 -13.25269 -12.86519 -12.69199 -12.51784 -12.43291 -12.33371 -12.05587 -12.01194 -11.87721 -11.76271 -11.72846 -11.44724 -11.19537 -10.63816 -10.49347 -10.42991 -9.99034 -9.85834 -8.77281 -6.38858 -0.98069 -0.65567 -0.19065 0.76343 1.48452 1.50545 1.67804 1.70740 1.79703 2.05652 2.43888 2.47787 2.49294 2.71607 2.97745 3.24592 3.51475 3.57872 3.72388 3.80414 3.85234 3.93725 4.05335 4.12839 4.22320 4.31529 4.38687 4.46588 4.50859 4.52436 4.65294 4.69727 4.72715 4.75218 4.81244 4.82504 4.98836 5.13014 5.18828 5.28135 5.34713 5.45126 5.55457 5.68806 5.70991 6.05237 6.05757 6.57499 6.90009 7.00013 7.30122 7.49727 8.60127 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.030713 B = 0.001975 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.437599 B =14174.460713 C =14622.024108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.245 3.755 3 H 0.020 0.980 4 C -0.616 4.616 5 H 0.048 0.952 6 C 0.002 3.998 7 N -0.920 5.920 8 Si 1.063 2.937 9 H -0.284 1.284 10 H -0.273 1.273 11 H -0.258 1.258 12 N -0.700 5.700 13 C 0.505 3.495 14 O -0.596 6.596 15 C -0.104 4.104 16 C -0.106 4.106 17 C 0.058 3.942 18 N -0.446 5.446 19 C 0.342 3.658 20 C -0.098 4.098 21 C -0.011 4.011 22 C 0.188 3.812 23 N -0.315 5.315 24 N -0.043 5.043 25 N -0.083 5.083 26 N -0.191 5.191 27 N -0.300 5.300 28 C 0.063 3.937 29 C -0.091 4.091 30 H 0.052 0.948 31 H 0.047 0.953 32 H 0.035 0.965 33 H 0.262 0.738 34 H 0.405 0.595 35 H 0.118 0.882 36 H 0.075 0.925 37 H 0.101 0.899 38 H 0.075 0.925 39 H 0.137 0.863 40 H 0.224 0.776 41 H 0.226 0.774 42 H 0.068 0.932 43 H 0.086 0.914 44 H 0.074 0.926 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.662 -5.947 -18.839 22.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.140 3.860 3 H 0.038 0.962 4 C -0.653 4.653 5 H 0.066 0.934 6 C -0.200 4.200 7 N -0.554 5.554 8 Si 0.887 3.113 9 H -0.209 1.209 10 H -0.199 1.199 11 H -0.183 1.183 12 N -0.349 5.349 13 C 0.292 3.708 14 O -0.478 6.478 15 C -0.125 4.125 16 C -0.144 4.144 17 C -0.066 4.066 18 N -0.165 5.165 19 C 0.079 3.921 20 C -0.126 4.126 21 C -0.039 4.039 22 C -0.076 4.076 23 N -0.176 5.176 24 N -0.037 5.037 25 N -0.070 5.070 26 N -0.071 5.071 27 N -0.128 5.128 28 C -0.064 4.064 29 C -0.130 4.130 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.241 0.759 35 H 0.136 0.864 36 H 0.094 0.906 37 H 0.120 0.880 38 H 0.093 0.907 39 H 0.155 0.845 40 H 0.241 0.759 41 H 0.242 0.758 42 H 0.086 0.914 43 H 0.105 0.895 44 H 0.092 0.908 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 10.225 -3.506 -19.394 22.203 hybrid contribution 0.198 -1.911 -0.122 1.925 sum 10.423 -5.417 -19.516 22.778 Atomic orbital electron populations 1.22315 0.98150 1.00545 0.99820 1.18662 0.91021 0.93063 0.83272 0.96250 1.22139 1.40765 1.10359 0.92064 0.93420 1.26616 0.92908 1.08418 0.92069 1.70966 1.45594 1.06083 1.32766 0.83765 0.78631 0.72506 0.76428 1.20945 1.19850 1.18296 1.46114 1.65205 1.14253 1.09332 1.21264 0.77084 0.87018 0.85431 1.90641 1.53009 1.18273 1.85854 1.21473 0.99841 0.99512 0.91678 1.21645 0.93224 1.01855 0.97708 1.22636 1.05837 0.91208 0.86916 1.59314 1.22423 1.32336 1.02468 1.21609 0.93720 0.87452 0.89305 1.22144 0.92122 0.95355 1.03014 1.21199 1.02432 0.96233 0.84035 1.24039 0.87620 0.97860 0.98088 1.75066 1.20222 1.24033 0.98302 1.78061 0.95257 1.08089 1.22321 1.82815 1.19100 1.22723 0.82401 1.53375 1.10891 1.35393 1.07449 1.76080 1.21089 1.24489 0.91156 1.22147 0.85859 1.00264 0.98086 1.21351 1.01928 0.97593 0.92104 0.92905 0.93398 0.94580 0.92880 0.75943 0.86437 0.90604 0.88026 0.90685 0.84505 0.75935 0.75787 0.91423 0.89520 0.90775 0.91487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.29 9.20 71.98 0.66 -5.63 16 2 C 0.24 10.81 2.16 44.24 0.10 10.91 16 3 H 0.02 0.96 6.15 -2.38 -0.01 0.94 16 4 C -0.62 -31.06 8.95 25.60 0.23 -30.83 16 5 H 0.05 2.50 7.96 -2.91 -0.02 2.47 16 6 C 0.00 0.13 5.19 84.66 0.44 0.57 16 7 N -0.92 -52.79 13.70 21.45 0.29 -52.50 16 8 Si 1.06 48.35 26.44 68.60 1.81 50.16 16 9 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 10 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 11 H -0.26 -10.98 6.14 99.48 0.61 -10.37 16 12 N -0.70 -23.95 4.98 -446.11 -2.22 -26.17 16 13 C 0.50 15.85 7.12 87.66 0.62 16.47 16 14 O -0.60 -24.21 15.64 -3.02 -0.05 -24.26 16 15 C -0.10 -1.94 2.59 -11.46 -0.03 -1.97 16 16 C -0.11 -1.30 5.26 30.65 0.16 -1.14 16 17 C 0.06 0.33 5.25 86.33 0.45 0.79 16 18 N -0.45 -4.63 4.68 -701.16 -3.28 -7.91 16 19 C 0.34 3.71 6.51 133.72 0.87 4.58 16 20 C -0.10 -0.28 9.11 22.35 0.20 -0.08 16 21 C -0.01 -0.05 10.10 22.34 0.23 0.17 16 22 C 0.19 3.27 8.11 134.12 1.09 4.36 16 23 N -0.32 -7.25 12.27 -55.68 -0.68 -7.93 16 24 N -0.04 -1.16 13.36 37.02 0.49 -0.67 16 25 N -0.08 -2.30 13.98 37.02 0.52 -1.78 16 26 N -0.19 -4.28 5.36 -55.72 -0.30 -4.58 16 27 N -0.30 -5.59 10.26 -54.86 -0.56 -6.16 16 28 C 0.06 0.92 4.65 86.32 0.40 1.32 16 29 C -0.09 -1.74 4.68 30.65 0.14 -1.60 16 30 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.05 2.09 5.47 -2.39 -0.01 2.08 16 32 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 33 H 0.26 14.93 8.73 -92.71 -0.81 14.12 16 34 H 0.41 11.59 8.01 -92.71 -0.74 10.85 16 35 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.08 1.15 8.14 -2.39 -0.02 1.14 16 37 H 0.10 1.07 7.66 -2.39 -0.02 1.05 16 38 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 39 H 0.14 -0.22 6.66 -2.39 -0.02 -0.24 16 40 H 0.22 -1.46 7.14 -2.91 -0.02 -1.48 16 41 H 0.23 -0.84 8.06 -2.91 -0.02 -0.87 16 42 H 0.07 0.94 8.11 -2.39 -0.02 0.92 16 43 H 0.09 1.46 7.71 -2.38 -0.02 1.44 16 44 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.07 1.53 8.04 -2.39 -0.02 1.51 16 Total: -1.00 -78.46 368.47 1.76 -76.69 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: 0.17 Total: 7.17 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: 5.57 Total: -2.07 kcal Atomic # 7 Polarization: -101.95 SS G_CDS: -5.74 Total: -107.69 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: -0.05 Total: -24.26 kcal Atomic # 14 Polarization: 48.35 SS G_CDS: 1.81 Total: 50.16 kcal Total: -78.46 1.76 -76.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362080182.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 205.741 kcal (2) G-P(sol) polarization free energy of solvation -78.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds