Wall clock time and date at job start Wed Apr 1 2020 04:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47147 * 2 1 4 4 C 1.46506 * 119.99936 * 89.99619 * 3 2 1 5 5 C 1.50703 * 109.46877 * 90.00092 * 4 3 2 6 6 H 1.08005 * 119.99817 * 0.02562 * 5 4 3 7 7 C 1.37871 * 120.00081 * 179.97438 * 5 4 3 8 8 N 1.31520 * 119.99848 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00321 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46844 * 60.00490 * 9 7 5 11 11 H 1.48496 * 109.47153 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47045 * 300.00555 * 9 7 5 13 13 C 1.34773 * 120.00036 * 270.27655 * 3 2 1 14 14 O 1.21281 * 120.00220 * 179.72597 * 13 3 2 15 15 C 1.50706 * 120.00080 * 359.72107 * 13 3 2 16 16 N 1.46889 * 109.47109 * 180.02562 * 15 13 3 17 17 C 1.47486 * 110.99986 * 265.97030 * 16 15 13 18 18 C 1.53513 * 87.93226 * 221.29776 * 17 16 15 19 19 N 1.46497 * 114.17390 * 272.37568 * 18 17 16 20 20 C 1.34783 * 119.99930 * 248.84394 * 19 18 17 21 21 O 1.21280 * 119.99799 * 359.97438 * 20 19 18 22 22 C 1.50694 * 119.99638 * 179.97438 * 20 19 18 23 23 H 1.08996 * 115.55450 * 325.58491 * 22 20 19 24 24 C 1.53003 * 117.50003 * 179.90966 * 22 20 19 25 25 C 1.53008 * 117.49734 * 111.25308 * 22 20 19 26 26 F 1.39899 * 117.50111 * 214.97680 * 25 22 20 27 27 F 1.39899 * 117.49454 * 359.97438 * 25 22 20 28 28 C 1.47483 * 111.00142 * 170.00052 * 16 15 13 29 29 H 1.08997 * 109.47273 * 60.00010 * 1 2 3 30 30 H 1.09005 * 109.47395 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47272 * 300.00321 * 1 2 3 32 32 H 1.08994 * 109.47531 * 239.99672 * 2 1 3 33 33 H 1.09005 * 109.46544 * 119.99607 * 2 1 3 34 34 H 1.09000 * 109.46803 * 209.99571 * 4 3 2 35 35 H 1.09000 * 109.47214 * 330.00364 * 4 3 2 36 36 H 0.96998 * 119.99944 * 179.97438 * 8 7 5 37 37 H 1.09004 * 109.46762 * 300.00389 * 15 13 3 38 38 H 1.08998 * 109.46924 * 59.99727 * 15 13 3 39 39 H 1.09004 * 113.47221 * 336.06269 * 17 16 15 40 40 H 1.08996 * 113.47880 * 106.53292 * 17 16 15 41 41 H 1.09004 * 114.16904 * 139.66845 * 18 17 16 42 42 H 0.96993 * 119.99684 * 68.83960 * 19 18 17 43 43 H 1.09003 * 117.49273 * 0.02562 * 24 22 20 44 44 H 1.08994 * 117.49983 * 144.99647 * 24 22 20 45 45 H 1.08992 * 113.47983 * 253.47263 * 28 16 15 46 46 H 1.09001 * 113.47203 * 23.93460 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 1.2688 5 6 3.6857 1.8350 1.7039 6 1 4.3428 1.2309 1.0958 7 6 4.1493 2.3905 2.8775 8 7 3.3493 3.1266 3.6176 9 14 5.9133 2.0964 3.4172 10 1 6.8412 2.6187 2.3821 11 1 6.1607 2.7965 4.7032 12 1 6.1400 0.6397 3.5955 13 6 2.2377 2.0184 -1.1671 14 8 2.6372 3.1635 -1.1672 15 6 1.9865 1.3080 -2.4723 16 7 2.2990 2.2100 -3.5888 17 6 1.0904 2.9180 -4.0504 18 6 1.5737 2.6894 -5.4894 19 7 2.4709 3.7319 -5.9936 20 6 2.0561 4.5639 -6.9695 21 8 0.9402 4.4492 -7.4305 22 6 2.9790 5.6366 -7.4877 23 1 3.6474 6.0789 -6.7491 24 6 2.4503 6.5478 -8.5973 25 6 3.5055 5.4859 -8.9164 26 9 4.8079 5.9267 -9.1748 27 9 3.0938 4.3624 -9.6413 28 6 2.2955 1.4834 -4.8722 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.0955 3.1411 1.1383 35 1 1.5816 1.6877 2.0284 36 1 3.6753 3.5170 4.4435 37 1 2.6203 0.4232 -2.5321 38 1 0.9397 1.0094 -2.5279 39 1 0.1638 2.3942 -3.8151 40 1 1.0661 3.9689 -3.7623 41 1 0.7812 2.4249 -6.1896 42 1 3.3635 3.8234 -5.6251 43 1 1.4348 6.3716 -8.9521 44 1 2.7709 7.5895 -8.5886 45 1 3.2925 1.3184 -5.2805 46 1 1.6906 0.5768 -4.8562 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001421028718.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:02 Heat of formation + Delta-G solvation = -87.467470 kcal Electronic energy + Delta-G solvation = -30119.463653 eV Core-core repulsion = 25489.905948 eV Total energy + Delta-G solvation = -4629.557705 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -49.12889 -47.80012 -40.97833 -39.65214 -38.53340 -35.97762 -35.23565 -34.23219 -32.81859 -30.45912 -30.03745 -27.31744 -26.16533 -25.68688 -24.21812 -23.03552 -23.00974 -22.22069 -20.87154 -20.02985 -18.82602 -18.37685 -17.64063 -16.89524 -16.67068 -16.46595 -16.33796 -16.20679 -15.95074 -15.39675 -15.03617 -14.73824 -14.47252 -14.39026 -14.17584 -14.07285 -13.97223 -13.93343 -13.50186 -13.31147 -12.98998 -12.76119 -12.68799 -12.40947 -12.04530 -11.80103 -11.74974 -11.52676 -11.44548 -11.17152 -11.01255 -10.93046 -10.74508 -10.71394 -10.51803 -10.28311 -10.12677 -9.64600 -9.37690 -9.15381 -8.64854 -8.43202 -7.64962 -6.04169 -4.08847 1.72115 2.46326 2.63375 2.92615 3.31360 3.35902 3.37402 3.45413 3.61834 3.69321 3.92480 4.05932 4.10115 4.24569 4.43830 4.46056 4.59814 4.93688 4.94857 5.03793 5.07954 5.13328 5.22642 5.28663 5.30388 5.31513 5.35132 5.44546 5.46965 5.59303 5.70796 5.76190 5.97535 6.14640 6.19571 6.20729 6.42973 6.75131 7.09905 7.14390 7.44591 7.56273 7.79533 7.92593 8.24103 8.44144 8.91210 9.14392 9.56333 11.03866 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.013960 B = 0.002179 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.271914 B =12847.787611 C =14104.110633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.601 5.601 4 C 0.248 3.752 5 C -0.525 4.525 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.896 5.896 9 Si 0.898 3.102 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.508 3.492 14 O -0.522 6.522 15 C -0.001 4.001 16 N -0.445 5.445 17 C -0.010 4.010 18 C 0.117 3.883 19 N -0.691 5.691 20 C 0.548 3.452 21 O -0.528 6.528 22 C -0.194 4.194 23 H 0.154 0.846 24 C -0.139 4.139 25 C 0.222 3.778 26 F -0.154 7.154 27 F -0.151 7.151 28 C -0.012 4.012 29 H 0.048 0.952 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.042 0.958 35 H 0.031 0.969 36 H 0.264 0.736 37 H 0.097 0.903 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.093 0.907 41 H 0.114 0.886 42 H 0.413 0.587 43 H 0.136 0.864 44 H 0.134 0.866 45 H 0.093 0.907 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.618 -1.220 -23.059 23.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.335 5.335 4 C 0.129 3.871 5 C -0.564 4.564 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.726 3.274 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.203 1.203 13 C 0.293 3.707 14 O -0.397 6.397 15 C -0.133 4.133 16 N -0.167 5.167 17 C -0.141 4.141 18 C 0.011 3.989 19 N -0.341 5.341 20 C 0.333 3.667 21 O -0.404 6.404 22 C -0.216 4.216 23 H 0.171 0.829 24 C -0.177 4.177 25 C 0.184 3.816 26 F -0.134 7.134 27 F -0.131 7.131 28 C -0.142 4.142 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.101 0.899 34 H 0.060 0.940 35 H 0.049 0.951 36 H 0.073 0.927 37 H 0.115 0.885 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.111 0.889 41 H 0.131 0.869 42 H 0.249 0.751 43 H 0.154 0.846 44 H 0.152 0.848 45 H 0.111 0.889 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.578 -0.252 -22.952 23.406 hybrid contribution 0.938 -0.904 0.608 1.438 sum -3.639 -1.156 -22.345 22.668 Atomic orbital electron populations 1.22228 0.96923 1.01350 1.02228 1.21389 0.93371 0.84429 1.02556 1.48274 1.64321 1.13126 1.07737 1.19231 0.96184 0.93572 0.78082 1.21397 0.96935 1.31869 1.06202 0.92584 1.24935 0.97831 0.94939 0.96417 1.69924 1.35725 1.33451 1.14377 0.86563 0.84851 0.78212 0.77816 1.20166 1.21193 1.20292 1.20008 0.79013 0.87130 0.84506 1.90668 1.44553 1.17677 1.86817 1.22733 1.01105 0.96764 0.92699 1.68866 1.30654 1.16875 1.00284 1.24424 0.93292 1.02702 0.93646 1.21984 0.93533 0.88096 0.95284 1.45379 1.18441 1.32492 1.37789 1.19148 0.86886 0.81277 0.79386 1.90728 1.20304 1.70921 1.58489 1.23748 1.02943 1.01153 0.93771 0.82869 1.24322 1.00106 0.97148 0.96109 1.19673 0.80549 0.88320 0.93009 1.93073 1.36988 1.88669 1.94674 1.93083 1.89370 1.51952 1.78746 1.24296 1.02242 0.96213 0.91431 0.93324 0.92190 0.91978 0.92017 0.89930 0.94010 0.95142 0.92686 0.88485 0.91288 0.90286 0.88860 0.86858 0.75139 0.84554 0.84835 0.88910 0.89820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.15 10.24 37.16 0.38 -1.77 16 2 C 0.11 1.64 5.93 -4.04 -0.02 1.62 16 3 N -0.60 -12.41 2.46 -175.05 -0.43 -12.84 16 4 C 0.25 6.45 5.17 -5.19 -0.03 6.43 16 5 C -0.53 -14.86 9.39 -34.44 -0.32 -15.18 16 6 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.90 -26.64 13.29 55.43 0.74 -25.91 16 9 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 13 C 0.51 10.33 7.74 -10.98 -0.09 10.24 16 14 O -0.52 -13.11 16.01 5.56 0.09 -13.02 16 15 C 0.00 -0.02 3.85 -4.98 -0.02 -0.04 16 16 N -0.44 -5.88 5.82 -246.09 -1.43 -7.32 16 17 C -0.01 -0.12 7.52 -7.54 -0.06 -0.18 16 18 C 0.12 1.16 4.59 -67.72 -0.31 0.85 16 19 N -0.69 -6.70 5.39 -53.54 -0.29 -6.99 16 20 C 0.55 5.72 7.25 -10.99 -0.08 5.64 16 21 O -0.53 -7.08 15.85 5.56 0.09 -6.99 16 22 C -0.19 -1.47 6.17 -91.77 -0.57 -2.04 16 23 H 0.15 0.82 8.14 -51.93 -0.42 0.40 16 24 C -0.14 -0.87 10.02 -26.69 -0.27 -1.14 16 25 C 0.22 1.86 5.20 -26.69 -0.14 1.72 16 26 F -0.15 -1.36 17.60 2.25 0.04 -1.33 16 27 F -0.15 -1.61 17.13 2.25 0.04 -1.58 16 28 C -0.01 -0.11 7.45 -7.54 -0.06 -0.17 16 29 H 0.05 0.58 7.20 -51.93 -0.37 0.21 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.06 0.77 6.45 -51.93 -0.33 0.43 16 33 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 34 H 0.04 1.23 7.41 -51.93 -0.38 0.85 16 35 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 36 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.10 1.20 7.35 -51.93 -0.38 0.82 16 38 H 0.07 0.80 6.32 -51.93 -0.33 0.47 16 39 H 0.08 0.82 7.42 -51.93 -0.39 0.43 16 40 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 41 H 0.11 1.10 7.46 -51.93 -0.39 0.72 16 42 H 0.41 3.60 8.76 -40.82 -0.36 3.24 16 43 H 0.14 0.93 7.67 -51.93 -0.40 0.53 16 44 H 0.13 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.08 0.61 7.91 -51.93 -0.41 0.20 16 LS Contribution 395.43 15.07 5.96 5.96 Total: -1.00 -36.14 395.43 -8.55 -44.69 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -6.66 Total: 0.87 kcal Atomic # 6 Polarization: 9.28 SS G_CDS: -1.67 Total: 7.61 kcal Atomic # 7 Polarization: -51.64 SS G_CDS: -1.41 Total: -53.06 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: 0.18 Total: -20.01 kcal Atomic # 9 Polarization: -2.98 SS G_CDS: 0.08 Total: -2.90 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.14 -8.55 -44.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001421028718.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.777 kcal (2) G-P(sol) polarization free energy of solvation -36.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds