Wall clock time and date at job start Wed Apr 1 2020 04:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47147 * 2 1 4 4 C 1.46506 * 119.99936 * 89.99619 * 3 2 1 5 5 C 1.50703 * 109.46877 * 90.00092 * 4 3 2 6 6 H 1.08005 * 119.99817 * 0.02562 * 5 4 3 7 7 C 1.37871 * 120.00081 * 179.97438 * 5 4 3 8 8 N 1.31520 * 119.99848 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00321 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46844 * 60.00490 * 9 7 5 11 11 H 1.48496 * 109.47153 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47045 * 300.00555 * 9 7 5 13 13 C 1.34773 * 120.00036 * 270.27655 * 3 2 1 14 14 O 1.21281 * 120.00220 * 179.72597 * 13 3 2 15 15 C 1.50706 * 120.00080 * 359.72107 * 13 3 2 16 16 N 1.46889 * 109.47109 * 180.02562 * 15 13 3 17 17 C 1.47486 * 110.99986 * 265.97030 * 16 15 13 18 18 C 1.53513 * 87.93226 * 221.29776 * 17 16 15 19 19 N 1.46497 * 114.17390 * 272.37568 * 18 17 16 20 20 C 1.34783 * 119.99930 * 248.84394 * 19 18 17 21 21 O 1.21280 * 119.99799 * 359.97438 * 20 19 18 22 22 C 1.50694 * 119.99638 * 179.97438 * 20 19 18 23 23 H 1.08996 * 115.55450 * 325.58491 * 22 20 19 24 24 C 1.53003 * 117.50003 * 179.90966 * 22 20 19 25 25 C 1.53008 * 117.49734 * 111.25308 * 22 20 19 26 26 F 1.39899 * 117.50111 * 214.97680 * 25 22 20 27 27 F 1.39899 * 117.49454 * 359.97438 * 25 22 20 28 28 C 1.47483 * 111.00142 * 170.00052 * 16 15 13 29 29 H 1.08997 * 109.47273 * 60.00010 * 1 2 3 30 30 H 1.09005 * 109.47395 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47272 * 300.00321 * 1 2 3 32 32 H 1.08994 * 109.47531 * 239.99672 * 2 1 3 33 33 H 1.09005 * 109.46544 * 119.99607 * 2 1 3 34 34 H 1.09000 * 109.46803 * 209.99571 * 4 3 2 35 35 H 1.09000 * 109.47214 * 330.00364 * 4 3 2 36 36 H 0.96998 * 119.99944 * 179.97438 * 8 7 5 37 37 H 1.09004 * 109.46762 * 300.00389 * 15 13 3 38 38 H 1.08998 * 109.46924 * 59.99727 * 15 13 3 39 39 H 1.09004 * 113.47221 * 336.06269 * 17 16 15 40 40 H 1.08996 * 113.47880 * 106.53292 * 17 16 15 41 41 H 1.09004 * 114.16904 * 139.66845 * 18 17 16 42 42 H 0.96993 * 119.99684 * 68.83960 * 19 18 17 43 43 H 1.09003 * 117.49273 * 0.02562 * 24 22 20 44 44 H 1.08994 * 117.49983 * 144.99647 * 24 22 20 45 45 H 1.08992 * 113.47983 * 253.47263 * 28 16 15 46 46 H 1.09001 * 113.47203 * 23.93460 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 1.2688 5 6 3.6857 1.8350 1.7039 6 1 4.3428 1.2309 1.0958 7 6 4.1493 2.3905 2.8775 8 7 3.3493 3.1266 3.6176 9 14 5.9133 2.0964 3.4172 10 1 6.8412 2.6187 2.3821 11 1 6.1607 2.7965 4.7032 12 1 6.1400 0.6397 3.5955 13 6 2.2377 2.0184 -1.1671 14 8 2.6372 3.1635 -1.1672 15 6 1.9865 1.3080 -2.4723 16 7 2.2990 2.2100 -3.5888 17 6 1.0904 2.9180 -4.0504 18 6 1.5737 2.6894 -5.4894 19 7 2.4709 3.7319 -5.9936 20 6 2.0561 4.5639 -6.9695 21 8 0.9402 4.4492 -7.4305 22 6 2.9790 5.6366 -7.4877 23 1 3.6474 6.0789 -6.7491 24 6 2.4503 6.5478 -8.5973 25 6 3.5055 5.4859 -8.9164 26 9 4.8079 5.9267 -9.1748 27 9 3.0938 4.3624 -9.6413 28 6 2.2955 1.4834 -4.8722 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.0955 3.1411 1.1383 35 1 1.5816 1.6877 2.0284 36 1 3.6753 3.5170 4.4435 37 1 2.6203 0.4232 -2.5321 38 1 0.9397 1.0094 -2.5279 39 1 0.1638 2.3942 -3.8151 40 1 1.0661 3.9689 -3.7623 41 1 0.7812 2.4249 -6.1896 42 1 3.3635 3.8234 -5.6251 43 1 1.4348 6.3716 -8.9521 44 1 2.7709 7.5895 -8.5886 45 1 3.2925 1.3184 -5.2805 46 1 1.6906 0.5768 -4.8562 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001421028718.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:01 Heat of formation + Delta-G solvation = -115.228206 kcal Electronic energy + Delta-G solvation = -30120.667449 eV Core-core repulsion = 25489.905948 eV Total energy + Delta-G solvation = -4630.761501 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.81278 -48.49835 -41.87907 -40.71123 -39.85533 -36.87492 -36.61798 -35.17295 -34.85347 -31.83369 -31.26671 -29.05286 -26.98948 -26.78492 -25.35393 -24.49820 -23.69855 -23.60890 -21.60879 -20.87017 -19.98246 -19.40110 -18.62357 -18.35238 -17.93441 -17.71837 -17.27239 -17.17725 -16.99112 -16.56508 -16.50274 -15.94309 -15.55838 -15.33376 -15.15741 -15.08393 -14.84488 -14.71986 -14.65440 -14.53030 -14.20751 -13.90594 -13.69146 -13.55327 -13.31647 -13.25102 -13.11743 -12.72031 -12.65483 -12.55802 -12.41477 -12.22233 -12.14822 -11.94398 -11.79070 -11.70935 -11.44477 -11.04013 -10.64454 -10.55524 -10.18954 -9.79271 -9.39287 -8.22167 -6.37265 0.98502 1.35854 1.40314 1.47612 1.80373 1.91226 1.99628 2.24477 2.26991 2.41932 3.04807 3.07261 3.11855 3.30436 3.38614 3.47914 3.67790 3.79836 3.84230 4.06229 4.12880 4.30492 4.37657 4.42893 4.44590 4.47554 4.58720 4.61146 4.63716 4.75443 4.79001 4.79995 4.94418 4.99431 5.05703 5.20934 5.28355 5.38801 5.40054 5.58367 5.83558 5.94203 6.07488 6.37012 6.71350 6.86605 7.01464 7.29583 7.58070 8.84573 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.013960 B = 0.002179 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.271914 B =12847.787611 C =14104.110633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.100 3.900 3 N -0.608 5.608 4 C 0.264 3.736 5 C -0.541 4.541 6 H 0.053 0.947 7 C 0.006 3.994 8 N -0.930 5.930 9 Si 0.968 3.032 10 H -0.277 1.277 11 H -0.279 1.279 12 H -0.259 1.259 13 C 0.496 3.504 14 O -0.584 6.584 15 C 0.015 3.985 16 N -0.478 5.478 17 C -0.013 4.013 18 C 0.121 3.879 19 N -0.689 5.689 20 C 0.543 3.457 21 O -0.562 6.562 22 C -0.194 4.194 23 H 0.176 0.824 24 C -0.120 4.120 25 C 0.208 3.792 26 F -0.157 7.157 27 F -0.169 7.169 28 C 0.003 3.997 29 H 0.060 0.940 30 H 0.096 0.904 31 H 0.035 0.965 32 H 0.103 0.897 33 H 0.069 0.931 34 H -0.008 1.008 35 H 0.019 0.981 36 H 0.267 0.733 37 H 0.123 0.877 38 H 0.102 0.898 39 H 0.097 0.903 40 H 0.060 0.940 41 H 0.118 0.882 42 H 0.417 0.583 43 H 0.131 0.869 44 H 0.165 0.835 45 H 0.101 0.899 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.119 -3.196 -24.495 25.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.022 4.022 3 N -0.340 5.340 4 C 0.143 3.857 5 C -0.579 4.579 6 H 0.071 0.929 7 C -0.193 4.193 8 N -0.570 5.570 9 Si 0.792 3.208 10 H -0.203 1.203 11 H -0.204 1.204 12 H -0.184 1.184 13 C 0.284 3.716 14 O -0.464 6.464 15 C -0.116 4.116 16 N -0.201 5.201 17 C -0.143 4.143 18 C 0.015 3.985 19 N -0.339 5.339 20 C 0.330 3.670 21 O -0.441 6.441 22 C -0.216 4.216 23 H 0.194 0.806 24 C -0.158 4.158 25 C 0.170 3.830 26 F -0.138 7.138 27 F -0.149 7.149 28 C -0.125 4.125 29 H 0.079 0.921 30 H 0.114 0.886 31 H 0.054 0.946 32 H 0.121 0.879 33 H 0.088 0.912 34 H 0.010 0.990 35 H 0.037 0.963 36 H 0.076 0.924 37 H 0.141 0.859 38 H 0.120 0.880 39 H 0.115 0.885 40 H 0.079 0.921 41 H 0.136 0.864 42 H 0.254 0.746 43 H 0.149 0.851 44 H 0.183 0.817 45 H 0.119 0.881 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -4.086 -2.288 -24.403 24.848 hybrid contribution 0.738 -0.274 1.060 1.320 sum -3.348 -2.563 -23.343 23.721 Atomic orbital electron populations 1.22159 0.94699 1.03474 1.01548 1.21736 0.95174 0.81394 1.03932 1.48317 1.64430 1.15086 1.06200 1.18632 0.95173 0.91314 0.80608 1.21683 0.97892 1.31911 1.06445 0.92886 1.25883 1.02446 0.94497 0.96480 1.70054 1.37857 1.34272 1.14827 0.85469 0.78983 0.79051 0.77320 1.20300 1.20411 1.18374 1.21246 0.77326 0.86703 0.86288 1.90631 1.47253 1.20600 1.87877 1.22656 1.03527 0.96431 0.89009 1.68811 1.31527 1.18185 1.01614 1.24464 0.93866 1.01077 0.94902 1.21969 0.93826 0.88516 0.94198 1.45455 1.18601 1.32364 1.37470 1.19600 0.86827 0.81528 0.79067 1.90706 1.21836 1.71925 1.59629 1.23827 1.02910 1.00769 0.94069 0.80633 1.24481 0.99134 0.98160 0.94004 1.19906 0.80945 0.88799 0.93311 1.93061 1.37364 1.88636 1.94722 1.93040 1.89562 1.53099 1.79230 1.24341 1.03237 0.96534 0.88430 0.92097 0.88554 0.94622 0.87924 0.91233 0.98998 0.96310 0.92448 0.85948 0.88034 0.88485 0.92098 0.86393 0.74638 0.85117 0.81704 0.88082 0.86684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.71 10.24 71.98 0.74 -2.97 16 2 C 0.10 2.87 5.93 86.38 0.51 3.39 16 3 N -0.61 -25.31 2.46 -826.13 -2.03 -27.33 16 4 C 0.26 14.41 5.17 85.63 0.44 14.85 16 5 C -0.54 -31.42 9.39 25.60 0.24 -31.18 16 6 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 7 C 0.01 0.33 5.46 84.65 0.46 0.79 16 8 N -0.93 -56.96 13.29 21.45 0.28 -56.67 16 9 Si 0.97 45.13 29.54 68.60 2.03 47.16 16 10 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 11 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 12 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 13 C 0.50 20.19 7.74 87.66 0.68 20.86 16 14 O -0.58 -30.61 16.01 -3.03 -0.05 -30.66 16 15 C 0.01 0.38 3.85 85.56 0.33 0.70 16 16 N -0.48 -11.80 5.82 -932.48 -5.43 -17.23 16 17 C -0.01 -0.29 7.52 83.58 0.63 0.34 16 18 C 0.12 2.19 4.59 45.45 0.21 2.40 16 19 N -0.69 -12.82 5.39 -441.69 -2.38 -15.20 16 20 C 0.54 11.03 7.25 87.65 0.64 11.67 16 21 O -0.56 -14.93 15.85 -3.03 -0.05 -14.98 16 22 C -0.19 -2.72 6.17 -11.54 -0.07 -2.79 16 23 H 0.18 1.59 8.14 -2.39 -0.02 1.57 16 24 C -0.12 -1.33 10.02 30.62 0.31 -1.02 16 25 C 0.21 3.29 5.20 30.62 0.16 3.45 16 26 F -0.16 -2.63 17.60 44.97 0.79 -1.84 16 27 F -0.17 -3.57 17.13 44.97 0.77 -2.80 16 28 C 0.00 0.05 7.45 83.58 0.62 0.67 16 29 H 0.06 1.26 7.20 -2.39 -0.02 1.24 16 30 H 0.10 1.56 8.14 -2.38 -0.02 1.54 16 31 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.10 2.13 6.45 -2.39 -0.02 2.11 16 33 H 0.07 2.18 8.07 -2.38 -0.02 2.16 16 34 H -0.01 -0.52 7.41 -2.39 -0.02 -0.53 16 35 H 0.02 1.05 8.07 -2.39 -0.02 1.03 16 36 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 37 H 0.12 2.48 7.35 -2.39 -0.02 2.46 16 38 H 0.10 1.91 6.32 -2.39 -0.02 1.89 16 39 H 0.10 1.79 7.42 -2.38 -0.02 1.77 16 40 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.12 2.08 7.46 -2.38 -0.02 2.06 16 42 H 0.42 6.96 8.76 -92.71 -0.81 6.15 16 43 H 0.13 1.66 7.67 -2.39 -0.02 1.64 16 44 H 0.17 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.12 1.07 7.91 -2.39 -0.02 1.05 16 Total: -1.00 -84.56 395.43 0.04 -84.52 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: 0.20 Total: 13.87 kcal Atomic # 6 Polarization: 15.28 SS G_CDS: 5.89 Total: 21.17 kcal Atomic # 7 Polarization: -106.88 SS G_CDS: -9.55 Total: -116.43 kcal Atomic # 8 Polarization: -45.55 SS G_CDS: -0.10 Total: -45.64 kcal Atomic # 9 Polarization: -6.20 SS G_CDS: 1.56 Total: -4.64 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -84.56 0.04 -84.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001421028718.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.708 kcal (2) G-P(sol) polarization free energy of solvation -84.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds