Wall clock time and date at job start Wed Apr 1 2020 03:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34225 * 116.99775 * 2 1 4 4 O 1.20819 * 120.00451 * 359.97438 * 3 2 1 5 5 C 1.50706 * 119.99658 * 179.97438 * 3 2 1 6 6 H 1.09000 * 109.44895 * 60.03729 * 5 3 2 7 7 C 1.53038 * 109.45970 * 300.06841 * 5 3 2 8 8 C 1.53633 * 109.23784 * 178.49265 * 7 5 3 9 9 N 1.46919 * 108.54624 * 54.85520 * 8 7 5 10 10 C 1.34777 * 120.63128 * 126.36715 * 9 8 7 11 11 O 1.21275 * 119.99886 * 179.44898 * 10 9 8 12 12 C 1.50703 * 119.99801 * 359.71831 * 10 9 8 13 13 H 1.09003 * 109.46587 * 59.72743 * 12 10 9 14 14 C 1.50693 * 109.47336 * 299.72614 * 12 10 9 15 15 H 1.08002 * 120.00038 * 333.81593 * 14 12 10 16 16 C 1.37878 * 120.00054 * 153.82007 * 14 12 10 17 17 N 1.31512 * 120.00165 * 5.34747 * 16 14 12 18 18 Si 1.86798 * 119.99931 * 185.35500 * 16 14 12 19 19 H 1.48497 * 109.47367 * 59.99622 * 18 16 14 20 20 H 1.48502 * 109.47336 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47025 * 299.99431 * 18 16 14 22 22 C 1.50702 * 109.46771 * 179.72414 * 12 10 9 23 23 C 1.38227 * 120.00092 * 65.59868 * 22 12 10 24 24 C 1.38240 * 120.00043 * 179.78637 * 23 22 12 25 25 C 1.38229 * 119.99890 * 0.46112 * 24 23 22 26 26 C 1.38238 * 120.00057 * 359.77132 * 25 24 23 27 27 C 1.38230 * 119.99780 * 245.86801 * 22 12 10 28 28 C 1.46925 * 118.73778 * 306.09376 * 9 8 7 29 29 C 1.53042 * 109.45649 * 179.97438 * 5 3 2 30 30 H 1.08996 * 109.52774 * 301.35462 * 29 5 3 31 31 C 1.53004 * 109.49790 * 61.43854 * 29 5 3 32 32 H 1.08998 * 109.46781 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47023 * 300.00008 * 1 2 3 34 34 H 1.08999 * 109.47307 * 59.99908 * 1 2 3 35 35 H 1.09000 * 109.49961 * 298.56548 * 7 5 3 36 36 H 1.08999 * 109.49944 * 58.66583 * 7 5 3 37 37 H 1.08996 * 109.73572 * 295.11040 * 8 7 5 38 38 H 1.09003 * 109.65818 * 174.55217 * 8 7 5 39 39 H 0.96993 * 120.00220 * 180.02562 * 17 16 14 40 40 H 1.08001 * 120.00144 * 359.97438 * 23 22 12 41 41 H 1.08004 * 119.99919 * 180.25402 * 24 23 22 42 42 H 1.07997 * 120.00469 * 179.79436 * 25 24 23 43 43 H 1.08002 * 120.00351 * 180.02562 * 26 25 24 44 44 H 1.08004 * 120.00595 * 359.97438 * 27 22 12 45 45 H 1.09005 * 109.58451 * 173.64387 * 28 9 8 46 46 H 1.08993 * 109.58640 * 293.93255 * 28 9 8 47 47 H 1.08996 * 109.46789 * 179.83360 * 31 29 5 48 48 H 1.08996 * 109.46729 * 299.83301 * 31 29 5 49 49 H 1.09003 * 109.46793 * 59.83179 * 31 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9560 0.7810 -0.8896 7 6 4.1128 0.5798 1.2497 8 6 5.6481 0.6300 1.2262 9 7 6.0677 2.0308 1.0832 10 6 6.9340 2.5807 1.9570 11 8 7.2803 3.7352 1.8223 12 6 7.4770 1.7593 3.0978 13 1 8.0099 0.8949 2.7017 14 6 6.3382 1.2923 3.9672 15 1 5.4200 1.8596 4.0053 16 6 6.4685 0.1407 4.7142 17 7 7.6204 -0.4927 4.7507 18 14 5.0086 -0.5199 5.6742 19 1 3.8967 -0.8235 4.7379 20 1 5.4059 -1.7597 6.3886 21 1 4.5623 0.4979 6.6592 22 6 8.4222 2.6001 3.9168 23 6 7.9455 3.6917 4.6181 24 6 8.8118 4.4604 5.3729 25 6 10.1564 4.1430 5.4187 26 6 10.6340 3.0541 4.7136 27 6 9.7669 2.2829 3.9623 28 6 5.5296 2.8188 -0.0340 29 6 3.9999 2.7425 -0.0002 30 1 3.5909 3.2428 -0.8779 31 6 3.4828 3.4285 1.2659 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 -0.3634 0.5138 -0.8900 35 1 3.7433 1.0884 2.1401 36 1 3.7841 -0.4594 1.2610 37 1 6.0226 0.0485 0.3838 38 1 6.0426 0.2236 2.1575 39 1 7.7120 -1.3030 5.2759 40 1 6.8957 3.9424 4.5788 41 1 8.4386 5.3109 5.9241 42 1 10.8338 4.7454 6.0057 43 1 11.6844 2.8058 4.7497 44 1 10.1401 1.4323 3.4112 45 1 5.8460 3.8572 0.0656 46 1 5.8966 2.4138 -0.9770 47 1 3.7943 4.4730 1.2663 48 1 2.3944 3.3739 1.2899 49 1 3.8912 2.9271 2.1434 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434215066.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:30 Heat of formation + Delta-G solvation = -99.787280 kcal Electronic energy + Delta-G solvation = -32032.836956 eV Core-core repulsion = 27924.681802 eV Total energy + Delta-G solvation = -4108.155154 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.89381 -39.56863 -38.17727 -37.06103 -36.21636 -33.95239 -32.80011 -31.53863 -30.98638 -29.87751 -28.22739 -27.75143 -26.53328 -25.53524 -23.70086 -22.65003 -21.63664 -21.48668 -20.73382 -19.24349 -18.16530 -17.56096 -16.94943 -16.60745 -16.33671 -15.90363 -15.81889 -15.16018 -14.70685 -14.50319 -14.39310 -14.06075 -13.82106 -13.68440 -13.58612 -13.27325 -12.81297 -12.58216 -12.45922 -12.33174 -12.24290 -12.17821 -11.70398 -11.61461 -11.53374 -11.44776 -11.17782 -11.04873 -10.97495 -10.94980 -10.69747 -10.44002 -10.37517 -10.29583 -10.20758 -10.02474 -9.91239 -9.44982 -8.76631 -8.57484 -7.96536 -7.88052 -7.55251 -6.30619 -4.35707 2.20980 2.44224 2.46340 2.69635 3.16738 3.23445 3.25343 3.64078 3.81867 4.23748 4.58924 4.84041 4.86101 4.87885 4.97818 5.04680 5.05751 5.20601 5.32224 5.40106 5.43993 5.68091 5.76157 5.76745 5.80986 5.87029 5.91846 5.96305 6.03561 6.08198 6.17994 6.24589 6.27394 6.38427 6.43381 6.53883 6.56903 6.63177 6.67482 6.75496 6.86910 7.01006 7.17148 7.29604 7.42540 7.50371 7.59689 7.75638 7.76209 7.98520 8.07004 8.24300 8.64187 9.17899 9.26395 10.76375 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012755 B = 0.004056 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.692637 B = 6902.097004 C = 8184.900781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.358 6.358 3 C 0.467 3.533 4 O -0.505 6.505 5 C -0.075 4.075 6 H 0.106 0.894 7 C -0.124 4.124 8 C 0.102 3.898 9 N -0.609 5.609 10 C 0.531 3.469 11 O -0.564 6.564 12 C 0.055 3.945 13 H 0.081 0.919 14 C -0.512 4.512 15 H 0.063 0.937 16 C 0.075 3.925 17 N -0.871 5.871 18 Si 0.889 3.111 19 H -0.271 1.271 20 H -0.285 1.285 21 H -0.275 1.275 22 C -0.005 4.005 23 C -0.084 4.084 24 C -0.136 4.136 25 C -0.149 4.149 26 C -0.133 4.133 27 C -0.113 4.113 28 C 0.115 3.885 29 C -0.085 4.085 30 H 0.080 0.920 31 C -0.156 4.156 32 H 0.099 0.901 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.052 0.948 38 H 0.141 0.859 39 H 0.268 0.732 40 H 0.109 0.891 41 H 0.104 0.896 42 H 0.103 0.897 43 H 0.105 0.895 44 H 0.110 0.890 45 H 0.093 0.907 46 H 0.058 0.942 47 H 0.052 0.948 48 H 0.068 0.932 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.820 -1.068 -8.243 10.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.275 6.275 3 C 0.310 3.690 4 O -0.392 6.392 5 C -0.094 4.094 6 H 0.124 0.876 7 C -0.162 4.162 8 C -0.021 4.021 9 N -0.342 5.342 10 C 0.322 3.678 11 O -0.442 6.442 12 C 0.034 3.966 13 H 0.098 0.902 14 C -0.549 4.549 15 H 0.081 0.919 16 C -0.130 4.130 17 N -0.505 5.505 18 Si 0.716 3.284 19 H -0.196 1.196 20 H -0.211 1.211 21 H -0.200 1.200 22 C -0.006 4.006 23 C -0.102 4.102 24 C -0.154 4.154 25 C -0.167 4.167 26 C -0.151 4.151 27 C -0.131 4.131 28 C -0.008 4.008 29 C -0.104 4.104 30 H 0.098 0.902 31 C -0.213 4.213 32 H 0.117 0.883 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.071 0.929 38 H 0.158 0.842 39 H 0.078 0.922 40 H 0.127 0.873 41 H 0.122 0.878 42 H 0.121 0.879 43 H 0.123 0.877 44 H 0.128 0.872 45 H 0.111 0.889 46 H 0.076 0.924 47 H 0.071 0.929 48 H 0.087 0.913 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.755 -0.339 -8.225 10.649 hybrid contribution -1.131 -0.478 0.625 1.378 sum -7.886 -0.817 -7.600 10.982 Atomic orbital electron populations 1.23228 0.76843 1.03481 1.02348 1.86536 1.23035 1.33803 1.84084 1.24005 0.92244 0.81069 0.71672 1.90600 1.67296 1.36155 1.45182 1.21218 0.86293 0.99440 1.02491 0.87609 1.22024 0.97470 1.00783 0.95920 1.22179 0.92506 0.81954 1.05460 1.47951 1.45878 1.12478 1.27899 1.21583 0.76699 0.87349 0.82137 1.90577 1.60097 1.18721 1.74838 1.18100 0.94954 0.93482 0.90038 0.90161 1.20576 0.98646 1.08703 1.26994 0.91883 1.24923 0.95816 0.96521 0.95768 1.69926 1.23002 1.18140 1.39482 0.86679 0.82704 0.78543 0.80503 1.19591 1.21064 1.20021 1.19945 0.92809 0.92716 0.95153 1.20792 0.98902 0.94681 0.95811 1.20933 0.93845 1.00007 1.00630 1.20773 0.95437 0.98683 1.01833 1.20884 0.98627 0.96485 0.99145 1.20936 0.93356 0.99001 0.99830 1.21494 0.91235 0.98482 0.89580 1.21336 0.96039 0.92632 1.00385 0.90160 1.22029 1.01886 1.00197 0.97211 0.88283 0.91992 0.92135 0.90049 0.90128 0.92946 0.84189 0.92226 0.87259 0.87757 0.87864 0.87705 0.87174 0.88907 0.92357 0.92865 0.91299 0.91631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.56 101.05 1.07 1.39 16 2 O -0.36 -4.46 10.44 -39.24 -0.41 -4.87 16 3 C 0.47 6.41 6.97 36.01 0.25 6.66 16 4 O -0.50 -7.91 13.50 -18.74 -0.25 -8.16 16 5 C -0.08 -0.97 2.37 -91.73 -0.22 -1.19 16 6 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 7 C -0.12 -1.79 4.97 -26.38 -0.13 -1.92 16 8 C 0.10 1.63 5.91 -3.48 -0.02 1.61 16 9 N -0.61 -10.73 2.41 -172.50 -0.41 -11.14 16 10 C 0.53 11.33 6.97 -10.98 -0.08 11.25 16 11 O -0.56 -13.36 14.81 5.56 0.08 -13.27 16 12 C 0.06 1.25 1.44 -94.08 -0.14 1.11 16 13 H 0.08 1.90 7.19 -51.93 -0.37 1.53 16 14 C -0.51 -11.86 5.20 -34.44 -0.18 -12.04 16 15 H 0.06 1.50 7.82 -52.49 -0.41 1.09 16 16 C 0.08 1.79 5.18 -17.82 -0.09 1.70 16 17 N -0.87 -21.69 13.00 55.43 0.72 -20.97 16 18 Si 0.89 18.92 29.54 -169.99 -5.02 13.90 16 19 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 20 H -0.29 -6.15 7.11 56.52 0.40 -5.74 16 21 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 22 C -0.01 -0.12 4.31 -104.63 -0.45 -0.57 16 23 C -0.08 -1.89 8.28 -39.58 -0.33 -2.22 16 24 C -0.14 -2.73 10.05 -39.58 -0.40 -3.13 16 25 C -0.15 -2.82 10.05 -39.58 -0.40 -3.22 16 26 C -0.13 -2.61 10.05 -39.58 -0.40 -3.00 16 27 C -0.11 -2.46 9.67 -39.58 -0.38 -2.85 16 28 C 0.12 1.74 5.82 -3.71 -0.02 1.72 16 29 C -0.08 -1.17 2.36 -90.49 -0.21 -1.39 16 30 H 0.08 1.03 8.07 -51.93 -0.42 0.61 16 31 C -0.16 -2.48 8.40 37.16 0.31 -2.17 16 32 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 34 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 35 H 0.08 1.35 6.34 -51.93 -0.33 1.02 16 36 H 0.08 1.07 8.08 -51.93 -0.42 0.65 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.14 2.66 4.38 -51.93 -0.23 2.43 16 39 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 40 H 0.11 2.51 7.91 -52.49 -0.42 2.09 16 41 H 0.10 1.81 8.06 -52.48 -0.42 1.39 16 42 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 43 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 44 H 0.11 2.31 7.96 -52.48 -0.42 1.89 16 45 H 0.09 1.55 7.01 -51.93 -0.36 1.19 16 46 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 47 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 48 H 0.07 1.11 5.65 -51.93 -0.29 0.82 16 49 H 0.06 1.16 5.97 -51.93 -0.31 0.85 16 LS Contribution 389.38 15.07 5.87 5.87 Total: -1.00 -28.32 389.38 -8.58 -36.90 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -7.34 Total: 10.01 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: -1.81 Total: -8.25 kcal Atomic # 7 Polarization: -32.42 SS G_CDS: 0.31 Total: -32.12 kcal Atomic # 8 Polarization: -25.72 SS G_CDS: -0.58 Total: -26.30 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.02 Total: 13.90 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -28.32 -8.58 -36.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434215066.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.890 kcal (2) G-P(sol) polarization free energy of solvation -28.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds