Wall clock time and date at job start Wed Apr 1 2020 03:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34225 * 116.99775 * 2 1 4 4 O 1.20819 * 120.00451 * 359.97438 * 3 2 1 5 5 C 1.50706 * 119.99658 * 179.97438 * 3 2 1 6 6 H 1.09000 * 109.44895 * 60.03729 * 5 3 2 7 7 C 1.53038 * 109.45970 * 300.06841 * 5 3 2 8 8 C 1.53633 * 109.23784 * 178.49265 * 7 5 3 9 9 N 1.46919 * 108.54624 * 54.85520 * 8 7 5 10 10 C 1.34777 * 120.63128 * 126.36715 * 9 8 7 11 11 O 1.21275 * 119.99886 * 179.44898 * 10 9 8 12 12 C 1.50703 * 119.99801 * 359.71831 * 10 9 8 13 13 H 1.09003 * 109.46587 * 59.72743 * 12 10 9 14 14 C 1.50693 * 109.47336 * 299.72614 * 12 10 9 15 15 H 1.08002 * 120.00038 * 333.81593 * 14 12 10 16 16 C 1.37878 * 120.00054 * 153.82007 * 14 12 10 17 17 N 1.31512 * 120.00165 * 5.34747 * 16 14 12 18 18 Si 1.86798 * 119.99931 * 185.35500 * 16 14 12 19 19 H 1.48497 * 109.47367 * 59.99622 * 18 16 14 20 20 H 1.48502 * 109.47336 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47025 * 299.99431 * 18 16 14 22 22 C 1.50702 * 109.46771 * 179.72414 * 12 10 9 23 23 C 1.38227 * 120.00092 * 65.59868 * 22 12 10 24 24 C 1.38240 * 120.00043 * 179.78637 * 23 22 12 25 25 C 1.38229 * 119.99890 * 0.46112 * 24 23 22 26 26 C 1.38238 * 120.00057 * 359.77132 * 25 24 23 27 27 C 1.38230 * 119.99780 * 245.86801 * 22 12 10 28 28 C 1.46925 * 118.73778 * 306.09376 * 9 8 7 29 29 C 1.53042 * 109.45649 * 179.97438 * 5 3 2 30 30 H 1.08996 * 109.52774 * 301.35462 * 29 5 3 31 31 C 1.53004 * 109.49790 * 61.43854 * 29 5 3 32 32 H 1.08998 * 109.46781 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47023 * 300.00008 * 1 2 3 34 34 H 1.08999 * 109.47307 * 59.99908 * 1 2 3 35 35 H 1.09000 * 109.49961 * 298.56548 * 7 5 3 36 36 H 1.08999 * 109.49944 * 58.66583 * 7 5 3 37 37 H 1.08996 * 109.73572 * 295.11040 * 8 7 5 38 38 H 1.09003 * 109.65818 * 174.55217 * 8 7 5 39 39 H 0.96993 * 120.00220 * 180.02562 * 17 16 14 40 40 H 1.08001 * 120.00144 * 359.97438 * 23 22 12 41 41 H 1.08004 * 119.99919 * 180.25402 * 24 23 22 42 42 H 1.07997 * 120.00469 * 179.79436 * 25 24 23 43 43 H 1.08002 * 120.00351 * 180.02562 * 26 25 24 44 44 H 1.08004 * 120.00595 * 359.97438 * 27 22 12 45 45 H 1.09005 * 109.58451 * 173.64387 * 28 9 8 46 46 H 1.08993 * 109.58640 * 293.93255 * 28 9 8 47 47 H 1.08996 * 109.46789 * 179.83360 * 31 29 5 48 48 H 1.08996 * 109.46729 * 299.83301 * 31 29 5 49 49 H 1.09003 * 109.46793 * 59.83179 * 31 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9560 0.7810 -0.8896 7 6 4.1128 0.5798 1.2497 8 6 5.6481 0.6300 1.2262 9 7 6.0677 2.0308 1.0832 10 6 6.9340 2.5807 1.9570 11 8 7.2803 3.7352 1.8223 12 6 7.4770 1.7593 3.0978 13 1 8.0099 0.8949 2.7017 14 6 6.3382 1.2923 3.9672 15 1 5.4200 1.8596 4.0053 16 6 6.4685 0.1407 4.7142 17 7 7.6204 -0.4927 4.7507 18 14 5.0086 -0.5199 5.6742 19 1 3.8967 -0.8235 4.7379 20 1 5.4059 -1.7597 6.3886 21 1 4.5623 0.4979 6.6592 22 6 8.4222 2.6001 3.9168 23 6 7.9455 3.6917 4.6181 24 6 8.8118 4.4604 5.3729 25 6 10.1564 4.1430 5.4187 26 6 10.6340 3.0541 4.7136 27 6 9.7669 2.2829 3.9623 28 6 5.5296 2.8188 -0.0340 29 6 3.9999 2.7425 -0.0002 30 1 3.5909 3.2428 -0.8779 31 6 3.4828 3.4285 1.2659 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 -0.3634 0.5138 -0.8900 35 1 3.7433 1.0884 2.1401 36 1 3.7841 -0.4594 1.2610 37 1 6.0226 0.0485 0.3838 38 1 6.0426 0.2236 2.1575 39 1 7.7120 -1.3030 5.2759 40 1 6.8957 3.9424 4.5788 41 1 8.4386 5.3109 5.9241 42 1 10.8338 4.7454 6.0057 43 1 11.6844 2.8058 4.7497 44 1 10.1401 1.4323 3.4112 45 1 5.8460 3.8572 0.0656 46 1 5.8966 2.4138 -0.9770 47 1 3.7943 4.4730 1.2663 48 1 2.3944 3.3739 1.2899 49 1 3.8912 2.9271 2.1434 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434215066.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:29 Heat of formation + Delta-G solvation = -112.604992 kcal Electronic energy + Delta-G solvation = -32033.392773 eV Core-core repulsion = 27924.681802 eV Total energy + Delta-G solvation = -4108.710971 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.02938 -41.01820 -39.65701 -38.43870 -37.38175 -35.68488 -34.22880 -32.92149 -32.57051 -31.49391 -29.38498 -29.17990 -27.73221 -26.92499 -25.38693 -23.91487 -23.18429 -22.81212 -22.14073 -20.65688 -19.49066 -18.71581 -18.52630 -17.96958 -17.54020 -17.39476 -17.11229 -16.69189 -16.20975 -15.98671 -15.85261 -15.48374 -15.29313 -14.91937 -14.71563 -14.54460 -14.35997 -14.06384 -13.94424 -13.79738 -13.57674 -13.33560 -13.23127 -13.12399 -12.90683 -12.77030 -12.71935 -12.61418 -12.44821 -12.15861 -12.07640 -11.92435 -11.74408 -11.65950 -11.51785 -11.44015 -11.23384 -11.16961 -10.58961 -10.28825 -9.51856 -9.39149 -9.20362 -8.15055 -6.22868 0.80167 0.85225 1.15183 1.43830 1.47402 1.52069 1.74996 1.98323 2.38267 2.45624 3.12899 3.29501 3.47865 3.73005 3.79926 4.01930 4.19985 4.21934 4.26321 4.31461 4.32051 4.33182 4.34950 4.45769 4.50428 4.56956 4.57551 4.69821 4.76872 4.80967 4.83797 4.90169 4.91343 5.00829 5.08604 5.12741 5.13158 5.17335 5.29539 5.41033 5.41862 5.48020 5.50026 5.70632 5.81825 5.84618 5.94509 5.99357 6.28462 6.43989 6.66637 6.73626 6.77444 7.39307 7.55141 8.91742 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012755 B = 0.004056 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.692637 B = 6902.097004 C = 8184.900781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.361 6.361 3 C 0.469 3.531 4 O -0.529 6.529 5 C -0.069 4.069 6 H 0.141 0.859 7 C -0.116 4.116 8 C 0.100 3.900 9 N -0.602 5.602 10 C 0.527 3.473 11 O -0.595 6.595 12 C 0.060 3.940 13 H 0.063 0.937 14 C -0.501 4.501 15 H 0.048 0.952 16 C 0.044 3.956 17 N -0.896 5.896 18 Si 0.934 3.066 19 H -0.255 1.255 20 H -0.285 1.285 21 H -0.287 1.287 22 C -0.030 4.030 23 C -0.111 4.111 24 C -0.139 4.139 25 C -0.146 4.146 26 C -0.131 4.131 27 C -0.136 4.136 28 C 0.115 3.885 29 C -0.077 4.077 30 H 0.100 0.900 31 C -0.149 4.149 32 H 0.130 0.870 33 H 0.055 0.945 34 H 0.066 0.934 35 H 0.054 0.946 36 H 0.098 0.902 37 H 0.084 0.916 38 H 0.110 0.890 39 H 0.266 0.734 40 H 0.090 0.910 41 H 0.131 0.869 42 H 0.144 0.856 43 H 0.138 0.862 44 H 0.108 0.892 45 H 0.073 0.927 46 H 0.092 0.908 47 H 0.044 0.956 48 H 0.065 0.935 49 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.082 -1.673 -9.249 11.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.277 6.277 3 C 0.314 3.686 4 O -0.418 6.418 5 C -0.088 4.088 6 H 0.158 0.842 7 C -0.155 4.155 8 C -0.022 4.022 9 N -0.334 5.334 10 C 0.318 3.682 11 O -0.476 6.476 12 C 0.039 3.961 13 H 0.081 0.919 14 C -0.538 4.538 15 H 0.067 0.933 16 C -0.159 4.159 17 N -0.532 5.532 18 Si 0.760 3.240 19 H -0.179 1.179 20 H -0.210 1.210 21 H -0.213 1.213 22 C -0.031 4.031 23 C -0.129 4.129 24 C -0.157 4.157 25 C -0.164 4.164 26 C -0.149 4.149 27 C -0.154 4.154 28 C -0.007 4.007 29 C -0.096 4.096 30 H 0.118 0.882 31 C -0.206 4.206 32 H 0.148 0.852 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.116 0.884 37 H 0.102 0.898 38 H 0.128 0.872 39 H 0.076 0.924 40 H 0.109 0.891 41 H 0.149 0.851 42 H 0.162 0.838 43 H 0.156 0.844 44 H 0.126 0.874 45 H 0.092 0.908 46 H 0.110 0.890 47 H 0.063 0.937 48 H 0.084 0.916 49 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -7.054 -0.980 -9.259 11.681 hybrid contribution -1.071 -0.261 0.936 1.446 sum -8.125 -1.241 -8.322 11.697 Atomic orbital electron populations 1.23523 0.75102 1.05573 1.02354 1.86516 1.24748 1.32877 1.83603 1.24021 0.92380 0.81145 0.71056 1.90597 1.67827 1.36991 1.46405 1.21176 0.86202 0.98509 1.02934 0.84169 1.21903 0.96057 1.01728 0.95773 1.22188 0.93648 0.81057 1.05259 1.47958 1.44549 1.13308 1.27610 1.21379 0.77485 0.86838 0.82530 1.90543 1.61634 1.19765 1.75697 1.17967 0.94647 0.93027 0.90458 0.91937 1.20485 0.98203 1.08342 1.26807 0.93331 1.25372 0.97357 0.96700 0.96426 1.70012 1.24247 1.18489 1.40449 0.85980 0.81105 0.77518 0.79440 1.17913 1.21038 1.21312 1.20105 0.93711 0.93427 0.95898 1.20806 0.98618 0.95845 0.97660 1.21287 0.94354 1.00188 0.99878 1.21223 0.95404 0.98478 1.01250 1.21293 0.99957 0.95892 0.97781 1.21102 0.93417 0.99814 1.01087 1.21670 0.91997 0.97322 0.89739 1.21276 0.94955 0.93595 0.99821 0.88202 1.21936 1.01524 0.99685 0.97492 0.85211 0.92646 0.91537 0.92733 0.88363 0.89763 0.87250 0.92430 0.89150 0.85147 0.83846 0.84410 0.87424 0.90813 0.88959 0.93677 0.91573 0.94200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.56 113.37 1.20 1.65 16 2 O -0.36 -8.09 10.44 -51.36 -0.54 -8.63 16 3 C 0.47 11.95 6.97 71.24 0.50 12.45 16 4 O -0.53 -15.86 13.50 21.99 0.30 -15.56 16 5 C -0.07 -1.63 2.37 -11.51 -0.03 -1.66 16 6 H 0.14 2.41 8.14 -2.39 -0.02 2.39 16 7 C -0.12 -3.23 4.97 30.82 0.15 -3.07 16 8 C 0.10 3.16 5.91 86.51 0.51 3.67 16 9 N -0.60 -21.34 2.41 -818.06 -1.97 -23.30 16 10 C 0.53 23.36 6.97 87.66 0.61 23.97 16 11 O -0.59 -29.37 14.81 -3.01 -0.04 -29.42 16 12 C 0.06 2.84 1.44 -13.03 -0.02 2.82 16 13 H 0.06 3.12 7.19 -2.39 -0.02 3.10 16 14 C -0.50 -24.20 5.20 25.60 0.13 -24.07 16 15 H 0.05 2.44 7.82 -2.91 -0.02 2.42 16 16 C 0.04 2.16 5.18 84.66 0.44 2.59 16 17 N -0.90 -45.76 13.00 21.45 0.28 -45.49 16 18 Si 0.93 39.35 29.54 68.60 2.03 41.38 16 19 H -0.25 -9.99 7.11 99.48 0.71 -9.28 16 20 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 21 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 22 C -0.03 -1.46 4.31 -19.87 -0.09 -1.54 16 23 C -0.11 -5.18 8.28 22.27 0.18 -4.99 16 24 C -0.14 -5.50 10.05 22.27 0.22 -5.27 16 25 C -0.15 -5.19 10.05 22.27 0.22 -4.97 16 26 C -0.13 -4.95 10.05 22.27 0.22 -4.72 16 27 C -0.14 -6.02 9.67 22.27 0.22 -5.81 16 28 C 0.12 3.34 5.82 86.36 0.50 3.85 16 29 C -0.08 -2.04 2.36 -10.71 -0.03 -2.06 16 30 H 0.10 2.33 8.07 -2.39 -0.02 2.31 16 31 C -0.15 -4.82 8.40 71.98 0.60 -4.21 16 32 H 0.13 1.30 8.14 -2.39 -0.02 1.29 16 33 H 0.05 0.99 8.13 -2.38 -0.02 0.97 16 34 H 0.07 1.02 8.13 -2.39 -0.02 1.00 16 35 H 0.05 1.82 6.34 -2.39 -0.02 1.80 16 36 H 0.10 2.38 8.08 -2.39 -0.02 2.37 16 37 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.11 4.24 4.38 -2.39 -0.01 4.22 16 39 H 0.27 13.15 8.31 -92.71 -0.77 12.38 16 40 H 0.09 4.41 7.91 -2.91 -0.02 4.39 16 41 H 0.13 4.34 8.06 -2.91 -0.02 4.31 16 42 H 0.14 3.94 8.06 -2.91 -0.02 3.92 16 43 H 0.14 4.19 8.06 -2.91 -0.02 4.17 16 44 H 0.11 4.67 7.96 -2.91 -0.02 4.64 16 45 H 0.07 2.47 7.01 -2.38 -0.02 2.45 16 46 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 47 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 48 H 0.07 2.16 5.65 -2.39 -0.01 2.15 16 49 H 0.04 1.47 5.97 -2.39 -0.01 1.46 16 Total: -1.00 -63.97 389.38 6.56 -57.41 By element: Atomic # 1 Polarization: 34.05 SS G_CDS: 0.95 Total: 35.00 kcal Atomic # 6 Polarization: -16.95 SS G_CDS: 5.56 Total: -11.39 kcal Atomic # 7 Polarization: -67.10 SS G_CDS: -1.69 Total: -68.79 kcal Atomic # 8 Polarization: -53.32 SS G_CDS: -0.28 Total: -53.61 kcal Atomic # 14 Polarization: 39.35 SS G_CDS: 2.03 Total: 41.38 kcal Total: -63.97 6.56 -57.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434215066.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.197 kcal (2) G-P(sol) polarization free energy of solvation -63.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds