Wall clock time and date at job start Wed Apr 1 2020 03:08:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45197 * 1
3 3 C 1.34223 * 116.99862 * 2 1
4 4 O 1.20822 * 120.00431 * 359.97438 * 3 2 1
5 5 C 1.50699 * 119.99853 * 180.02562 * 3 2 1
6 6 C 1.53002 * 109.47329 * 179.97438 * 5 3 2
7 7 H 1.09000 * 110.77698 * 56.77822 * 6 5 3
8 8 C 1.54330 * 110.71923 * 293.54787 * 6 5 3
9 9 N 1.47021 * 107.39847 * 219.51773 * 8 6 5
10 10 C 1.34781 * 125.64638 * 178.89772 * 9 8 6
11 11 O 1.21278 * 119.99895 * 359.97438 * 10 9 8
12 12 C 1.50702 * 120.00085 * 180.02562 * 10 9 8
13 13 H 1.08999 * 109.46656 * 331.44271 * 12 10 9
14 14 C 1.50699 * 109.47034 * 91.44304 * 12 10 9
15 15 H 1.07997 * 119.99860 * 33.75953 * 14 12 10
16 16 C 1.37871 * 119.99775 * 213.74557 * 14 12 10
17 17 N 1.31524 * 119.99959 * 178.77149 * 16 14 12
18 18 Si 1.86798 * 120.00260 * 358.77442 * 16 14 12
19 19 H 1.48504 * 109.47288 * 95.15555 * 18 16 14
20 20 H 1.48497 * 109.47395 * 215.15364 * 18 16 14
21 21 H 1.48495 * 109.47373 * 335.15655 * 18 16 14
22 22 C 1.50694 * 109.46910 * 211.44925 * 12 10 9
23 23 C 1.38236 * 119.99747 * 293.94260 * 22 12 10
24 24 C 1.38243 * 119.99715 * 179.79162 * 23 22 12
25 25 C 1.38225 * 120.00066 * 0.44233 * 24 23 22
26 26 C 1.38242 * 120.00029 * 359.80993 * 25 24 23
27 27 C 1.38225 * 119.99847 * 359.97438 * 26 25 24
28 28 C 1.47419 * 108.70743 * 358.86360 * 9 8 6
29 29 C 1.54917 * 104.82980 * 24.12843 * 28 9 8
30 30 H 1.08991 * 111.00436 * 81.10384 * 29 28 9
31 31 C 1.52998 * 111.00146 * 204.91797 * 29 28 9
32 32 H 1.09008 * 109.47717 * 180.02562 * 1 2 3
33 33 H 1.09002 * 109.47401 * 299.99892 * 1 2 3
34 34 H 1.09002 * 109.47763 * 60.00367 * 1 2 3
35 35 H 1.09004 * 109.47288 * 59.99970 * 5 3 2
36 36 H 1.08999 * 109.47448 * 299.99695 * 5 3 2
37 37 H 1.09000 * 109.88566 * 100.02506 * 8 6 5
38 38 H 1.08999 * 109.88224 * 339.00812 * 8 6 5
39 39 H 0.96998 * 120.00048 * 180.02562 * 17 16 14
40 40 H 1.07999 * 120.00411 * 359.97438 * 23 22 12
41 41 H 1.07998 * 119.99770 * 180.27603 * 24 23 22
42 42 H 1.08004 * 120.00391 * 179.83602 * 25 24 23
43 43 H 1.07997 * 120.00073 * 179.97438 * 26 25 24
44 44 H 1.08007 * 120.00008 * 179.97438 * 27 26 25
45 45 H 1.08992 * 110.36935 * 142.96361 * 28 9 8
46 46 H 1.09005 * 110.36665 * 265.29171 * 28 9 8
47 47 H 1.09007 * 109.47273 * 58.54913 * 31 29 28
48 48 H 1.08999 * 109.47366 * 178.54606 * 31 29 28
49 49 H 1.08994 * 109.47441 * 298.54669 * 31 29 28
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0613 1.1960 0.0000
4 8 1.4033 2.2093 -0.0005
5 6 3.5662 1.2748 -0.0006
6 6 4.0001 2.7420 -0.0011
7 1 3.5746 3.2714 0.8515
8 6 3.6014 3.4288 -1.3244
9 7 4.7064 4.3198 -1.7076
10 6 4.7513 5.0828 -2.8177
11 8 3.8254 5.0689 -3.6009
12 6 5.9525 5.9523 -3.0864
13 1 6.4104 6.2415 -2.1405
14 6 6.9517 5.1866 -3.9148
15 1 6.6098 4.4731 -4.6499
16 6 8.3022 5.3971 -3.7345
17 7 9.1747 4.7114 -4.4404
18 14 8.8929 6.6562 -2.4875
19 1 9.1910 5.9768 -1.2011
20 1 10.1224 7.3165 -2.9950
21 1 7.8350 7.6764 -2.2749
22 6 5.5213 7.1875 -3.8342
23 6 5.0263 7.0793 -5.1203
24 6 4.6266 8.2120 -5.8047
25 6 4.7306 9.4537 -5.2063
26 6 5.2305 9.5624 -3.9221
27 6 5.6259 8.4294 -3.2361
28 6 5.7567 4.2410 -0.6762
29 6 5.5495 2.8607 -0.0039
30 1 5.9998 2.0654 -0.5977
31 6 6.1032 2.8569 1.4224
32 1 -0.3635 -1.0277 0.0005
33 1 -0.3634 0.5138 0.8900
34 1 -0.3635 0.5138 -0.8900
35 1 3.9556 0.7809 -0.8908
36 1 3.9564 0.7806 0.8891
37 1 2.6900 4.0092 -1.1810
38 1 3.4447 2.6782 -2.0991
39 1 10.1249 4.8593 -4.3133
40 1 4.9490 6.1096 -5.5894
41 1 4.2358 8.1270 -6.8078
42 1 4.4208 10.3389 -5.7420
43 1 5.3120 10.5326 -3.4547
44 1 6.0168 8.5144 -2.2329
45 1 6.7439 4.2949 -1.1351
46 1 5.6324 5.0410 0.0537
47 1 5.6071 3.6318 2.0068
48 1 5.9216 1.8845 1.8800
49 1 7.1753 3.0518 1.3965
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001434371481.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:08:36
Heat of formation + Delta-G solvation = -101.960794 kcal
Electronic energy + Delta-G solvation = -30994.927281 eV
Core-core repulsion = 26886.677876 eV
Total energy + Delta-G solvation = -4108.249404 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.177 amu
Computer time = 0.93 seconds
Orbital eigenvalues (eV)
-40.76944 -39.66965 -38.49541 -37.21766 -36.48848 -33.64391 -33.00495 -31.65148
-31.45056 -30.08898 -28.69738 -27.79055 -26.43072 -26.11627 -23.68293 -22.54245
-21.81552 -20.94843 -20.74265 -19.90140 -18.58748 -17.61917 -17.09364 -16.93821
-16.56391 -16.21823 -16.04414 -15.70270 -14.84182 -14.54802 -14.30515 -14.07259
-13.94037 -13.88350 -13.38691 -13.17443 -13.07806 -12.90433 -12.72090 -12.52330
-12.41981 -12.26397 -12.23640 -11.98605 -11.87902 -11.65627 -11.54242 -11.12895
-10.99988 -10.96033 -10.91043 -10.76303 -10.65072 -10.47686 -10.37187 -10.17898
-9.87011 -9.54572 -8.86487 -8.70755 -8.07815 -8.04195 -7.77313 -6.27162
-4.30325 2.07073 2.17452 2.25185 2.52675 3.12607 3.26453 3.28744
3.58016 3.65415 4.24325 4.34752 4.53533 4.61137 4.66495 4.74700
4.88285 4.96117 5.06869 5.13051 5.17166 5.27480 5.31968 5.45201
5.51321 5.57865 5.60040 5.63961 5.72505 5.73559 5.84783 5.88429
6.00662 6.05303 6.11829 6.14524 6.23684 6.27495 6.29191 6.35981
6.40112 6.48409 6.76455 6.89394 6.93921 7.20740 7.31882 7.32549
7.59505 7.65192 7.84376 8.13854 8.32923 8.75879 9.07554 9.30111
10.83990
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.011630 B = 0.003497 C = 0.002988
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2407.028166 B = 8003.834425 C = 9368.253874
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.035 3.965
2 O -0.363 6.363
3 C 0.458 3.542
4 O -0.500 6.500
5 C -0.103 4.103
6 C -0.086 4.086
7 H 0.093 0.907
8 C 0.118 3.882
9 N -0.621 5.621
10 C 0.553 3.447
11 O -0.552 6.552
12 C 0.039 3.961
13 H 0.057 0.943
14 C -0.503 4.503
15 H 0.081 0.919
16 C 0.085 3.915
17 N -0.884 5.884
18 Si 0.856 3.144
19 H -0.273 1.273
20 H -0.283 1.283
21 H -0.247 1.247
22 C -0.041 4.041
23 C -0.066 4.066
24 C -0.134 4.134
25 C -0.141 4.141
26 C -0.135 4.135
27 C -0.132 4.132
28 C 0.104 3.896
29 C -0.100 4.100
30 H 0.092 0.908
31 C -0.142 4.142
32 H 0.099 0.901
33 H 0.061 0.939
34 H 0.063 0.937
35 H 0.111 0.889
36 H 0.111 0.889
37 H 0.069 0.931
38 H 0.058 0.942
39 H 0.268 0.732
40 H 0.123 0.877
41 H 0.111 0.889
42 H 0.108 0.892
43 H 0.109 0.891
44 H 0.111 0.889
45 H 0.092 0.908
46 H 0.062 0.938
47 H 0.057 0.943
48 H 0.058 0.942
49 H 0.063 0.937
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.071 -5.560 12.526 16.435
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.059 4.059
2 O -0.280 6.280
3 C 0.301 3.699
4 O -0.387 6.387
5 C -0.141 4.141
6 C -0.105 4.105
7 H 0.111 0.889
8 C -0.005 4.005
9 N -0.356 5.356
10 C 0.344 3.656
11 O -0.430 6.430
12 C 0.017 3.983
13 H 0.075 0.925
14 C -0.540 4.540
15 H 0.099 0.901
16 C -0.120 4.120
17 N -0.519 5.519
18 Si 0.682 3.318
19 H -0.199 1.199
20 H -0.209 1.209
21 H -0.170 1.170
22 C -0.042 4.042
23 C -0.084 4.084
24 C -0.152 4.152
25 C -0.159 4.159
26 C -0.153 4.153
27 C -0.150 4.150
28 C -0.019 4.019
29 C -0.119 4.119
30 H 0.110 0.890
31 C -0.199 4.199
32 H 0.118 0.882
33 H 0.080 0.920
34 H 0.082 0.918
35 H 0.129 0.871
36 H 0.129 0.871
37 H 0.088 0.912
38 H 0.076 0.924
39 H 0.078 0.922
40 H 0.141 0.859
41 H 0.129 0.871
42 H 0.126 0.874
43 H 0.127 0.873
44 H 0.129 0.871
45 H 0.110 0.890
46 H 0.080 0.920
47 H 0.076 0.924
48 H 0.077 0.923
49 H 0.082 0.918
Dipole moment (debyes) X Y Z Total
from point charges -9.598 -5.245 11.966 16.211
hybrid contribution 0.355 0.621 0.545 0.899
sum -9.243 -4.624 12.511 16.228
Atomic orbital electron populations
1.23250 0.76429 1.03545 1.02631 1.86504 1.23425 1.33735 1.84309
1.23897 0.92344 0.81309 0.72389 1.90700 1.67204 1.36173 1.44579
1.21456 0.87249 0.99034 1.06340 1.22207 0.96000 0.93134 0.99159
0.88852 1.21827 0.90913 0.93446 0.94355 1.48425 1.19354 1.44983
1.22888 1.20953 0.87838 0.78876 0.77906 1.90583 1.39302 1.67318
1.45749 1.18340 0.92152 0.90585 0.97199 0.92473 1.20470 0.88817
1.23431 1.21322 0.90068 1.24955 0.96345 0.95079 0.95602 1.69866
1.02062 1.40023 1.39998 0.87148 0.79627 0.83216 0.81811 1.19880
1.20929 1.17047 1.20168 0.94600 0.94432 0.95001 1.20984 0.95231
0.98221 0.93945 1.21070 1.01649 0.92944 0.99554 1.20880 1.02364
0.97005 0.95688 1.20878 1.01372 0.97636 0.95393 1.21070 1.01531
0.92669 0.99719 1.22368 0.93548 0.95817 0.90184 1.22472 0.93628
0.98470 0.97336 0.88989 1.21720 1.01540 1.01876 0.94777 0.88228
0.91981 0.91780 0.87058 0.87132 0.91226 0.92407 0.92194 0.85858
0.87106 0.87376 0.87328 0.87096 0.89007 0.92001 0.92353 0.92291
0.91828
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.28 10.56 101.05 1.07 1.35 16
2 O -0.36 -3.78 10.56 -39.24 -0.41 -4.19 16
3 C 0.46 5.31 7.75 36.01 0.28 5.59 16
4 O -0.50 -7.29 14.61 -18.75 -0.27 -7.57 16
5 C -0.10 -0.97 5.21 -27.88 -0.15 -1.12 16
6 C -0.09 -1.01 2.03 -88.65 -0.18 -1.19 16
7 H 0.09 1.08 7.92 -51.93 -0.41 0.66 16
8 C 0.12 1.92 5.45 -3.06 -0.02 1.91 16
9 N -0.62 -11.78 3.33 -170.52 -0.57 -12.35 16
10 C 0.55 12.66 6.86 -10.98 -0.08 12.59 16
11 O -0.55 -14.04 15.41 5.56 0.09 -13.95 16
12 C 0.04 0.91 1.25 -94.08 -0.12 0.79 16
13 H 0.06 1.26 4.16 -51.93 -0.22 1.04 16
14 C -0.50 -13.34 8.22 -34.44 -0.28 -13.62 16
15 H 0.08 2.43 8.06 -52.49 -0.42 2.01 16
16 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16
17 N -0.88 -25.27 13.96 55.43 0.77 -24.49 16
18 Si 0.86 19.40 27.02 -169.99 -4.59 14.81 16
19 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16
20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16
21 H -0.25 -5.27 4.37 56.52 0.25 -5.02 16
22 C -0.04 -0.94 4.44 -104.63 -0.46 -1.40 16
23 C -0.07 -1.49 8.05 -39.58 -0.32 -1.81 16
24 C -0.13 -2.62 10.05 -39.58 -0.40 -3.02 16
25 C -0.14 -2.53 10.05 -39.58 -0.40 -2.93 16
26 C -0.13 -2.47 10.05 -39.58 -0.40 -2.86 16
27 C -0.13 -2.71 8.63 -39.59 -0.34 -3.06 16
28 C 0.10 1.63 5.73 -2.53 -0.01 1.61 16
29 C -0.10 -1.17 3.09 -88.34 -0.27 -1.44 16
30 H 0.09 1.08 8.05 -51.93 -0.42 0.67 16
31 C -0.14 -1.27 9.30 37.16 0.35 -0.93 16
32 H 0.10 0.51 8.14 -51.92 -0.42 0.09 16
33 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16
34 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16
35 H 0.11 0.99 8.06 -51.93 -0.42 0.57 16
36 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16
37 H 0.07 1.25 7.68 -51.93 -0.40 0.85 16
38 H 0.06 0.99 7.76 -51.93 -0.40 0.59 16
39 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16
40 H 0.12 2.98 7.51 -52.49 -0.39 2.58 16
41 H 0.11 1.87 8.06 -52.49 -0.42 1.44 16
42 H 0.11 1.59 8.06 -52.48 -0.42 1.16 16
43 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16
44 H 0.11 2.12 6.95 -52.48 -0.36 1.76 16
45 H 0.09 1.62 7.52 -51.93 -0.39 1.23 16
46 H 0.06 0.87 8.04 -51.93 -0.42 0.45 16
47 H 0.06 0.50 8.11 -51.92 -0.42 0.08 16
48 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16
49 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16
LS Contribution 396.82 15.07 5.98 5.98
Total: -1.00 -33.32 396.82 -8.61 -41.93
By element:
Atomic # 1 Polarization: 14.99 SS G_CDS: -7.77 Total: 7.22 kcal
Atomic # 6 Polarization: -5.56 SS G_CDS: -1.83 Total: -7.39 kcal
Atomic # 7 Polarization: -37.05 SS G_CDS: 0.21 Total: -36.84 kcal
Atomic # 8 Polarization: -25.11 SS G_CDS: -0.60 Total: -25.71 kcal
Atomic # 14 Polarization: 19.40 SS G_CDS: -4.59 Total: 14.81 kcal
Total LS contribution 5.98 Total: 5.98 kcal
Total: -33.32 -8.61 -41.93 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001434371481.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -60.026 kcal
(2) G-P(sol) polarization free energy of solvation -33.323 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.349 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.612 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.935 kcal
(6) G-S(sol) free energy of system = (1) + (5) -101.961 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.93 seconds