Wall clock time and date at job start Wed Apr 1 2020 03:08:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45197 * 1
3 3 C 1.34223 * 116.99862 * 2 1
4 4 O 1.20822 * 120.00431 * 359.97438 * 3 2 1
5 5 C 1.50699 * 119.99853 * 180.02562 * 3 2 1
6 6 C 1.53002 * 109.47329 * 179.97438 * 5 3 2
7 7 H 1.09000 * 110.77698 * 56.77822 * 6 5 3
8 8 C 1.54330 * 110.71923 * 293.54787 * 6 5 3
9 9 N 1.47021 * 107.39847 * 219.51773 * 8 6 5
10 10 C 1.34781 * 125.64638 * 178.89772 * 9 8 6
11 11 O 1.21278 * 119.99895 * 359.97438 * 10 9 8
12 12 C 1.50702 * 120.00085 * 180.02562 * 10 9 8
13 13 H 1.08999 * 109.46656 * 331.44271 * 12 10 9
14 14 C 1.50699 * 109.47034 * 91.44304 * 12 10 9
15 15 H 1.07997 * 119.99860 * 33.75953 * 14 12 10
16 16 C 1.37871 * 119.99775 * 213.74557 * 14 12 10
17 17 N 1.31524 * 119.99959 * 178.77149 * 16 14 12
18 18 Si 1.86798 * 120.00260 * 358.77442 * 16 14 12
19 19 H 1.48504 * 109.47288 * 95.15555 * 18 16 14
20 20 H 1.48497 * 109.47395 * 215.15364 * 18 16 14
21 21 H 1.48495 * 109.47373 * 335.15655 * 18 16 14
22 22 C 1.50694 * 109.46910 * 211.44925 * 12 10 9
23 23 C 1.38236 * 119.99747 * 293.94260 * 22 12 10
24 24 C 1.38243 * 119.99715 * 179.79162 * 23 22 12
25 25 C 1.38225 * 120.00066 * 0.44233 * 24 23 22
26 26 C 1.38242 * 120.00029 * 359.80993 * 25 24 23
27 27 C 1.38225 * 119.99847 * 359.97438 * 26 25 24
28 28 C 1.47419 * 108.70743 * 358.86360 * 9 8 6
29 29 C 1.54917 * 104.82980 * 24.12843 * 28 9 8
30 30 H 1.08991 * 111.00436 * 81.10384 * 29 28 9
31 31 C 1.52998 * 111.00146 * 204.91797 * 29 28 9
32 32 H 1.09008 * 109.47717 * 180.02562 * 1 2 3
33 33 H 1.09002 * 109.47401 * 299.99892 * 1 2 3
34 34 H 1.09002 * 109.47763 * 60.00367 * 1 2 3
35 35 H 1.09004 * 109.47288 * 59.99970 * 5 3 2
36 36 H 1.08999 * 109.47448 * 299.99695 * 5 3 2
37 37 H 1.09000 * 109.88566 * 100.02506 * 8 6 5
38 38 H 1.08999 * 109.88224 * 339.00812 * 8 6 5
39 39 H 0.96998 * 120.00048 * 180.02562 * 17 16 14
40 40 H 1.07999 * 120.00411 * 359.97438 * 23 22 12
41 41 H 1.07998 * 119.99770 * 180.27603 * 24 23 22
42 42 H 1.08004 * 120.00391 * 179.83602 * 25 24 23
43 43 H 1.07997 * 120.00073 * 179.97438 * 26 25 24
44 44 H 1.08007 * 120.00008 * 179.97438 * 27 26 25
45 45 H 1.08992 * 110.36935 * 142.96361 * 28 9 8
46 46 H 1.09005 * 110.36665 * 265.29171 * 28 9 8
47 47 H 1.09007 * 109.47273 * 58.54913 * 31 29 28
48 48 H 1.08999 * 109.47366 * 178.54606 * 31 29 28
49 49 H 1.08994 * 109.47441 * 298.54669 * 31 29 28
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0613 1.1960 0.0000
4 8 1.4033 2.2093 -0.0005
5 6 3.5662 1.2748 -0.0006
6 6 4.0001 2.7420 -0.0011
7 1 3.5746 3.2714 0.8515
8 6 3.6014 3.4288 -1.3244
9 7 4.7064 4.3198 -1.7076
10 6 4.7513 5.0828 -2.8177
11 8 3.8254 5.0689 -3.6009
12 6 5.9525 5.9523 -3.0864
13 1 6.4104 6.2415 -2.1405
14 6 6.9517 5.1866 -3.9148
15 1 6.6098 4.4731 -4.6499
16 6 8.3022 5.3971 -3.7345
17 7 9.1747 4.7114 -4.4404
18 14 8.8929 6.6562 -2.4875
19 1 9.1910 5.9768 -1.2011
20 1 10.1224 7.3165 -2.9950
21 1 7.8350 7.6764 -2.2749
22 6 5.5213 7.1875 -3.8342
23 6 5.0263 7.0793 -5.1203
24 6 4.6266 8.2120 -5.8047
25 6 4.7306 9.4537 -5.2063
26 6 5.2305 9.5624 -3.9221
27 6 5.6259 8.4294 -3.2361
28 6 5.7567 4.2410 -0.6762
29 6 5.5495 2.8607 -0.0039
30 1 5.9998 2.0654 -0.5977
31 6 6.1032 2.8569 1.4224
32 1 -0.3635 -1.0277 0.0005
33 1 -0.3634 0.5138 0.8900
34 1 -0.3635 0.5138 -0.8900
35 1 3.9556 0.7809 -0.8908
36 1 3.9564 0.7806 0.8891
37 1 2.6900 4.0092 -1.1810
38 1 3.4447 2.6782 -2.0991
39 1 10.1249 4.8593 -4.3133
40 1 4.9490 6.1096 -5.5894
41 1 4.2358 8.1270 -6.8078
42 1 4.4208 10.3389 -5.7420
43 1 5.3120 10.5326 -3.4547
44 1 6.0168 8.5144 -2.2329
45 1 6.7439 4.2949 -1.1351
46 1 5.6324 5.0410 0.0537
47 1 5.6071 3.6318 2.0068
48 1 5.9216 1.8845 1.8800
49 1 7.1753 3.0518 1.3965
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001434371481.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:08:35
Heat of formation + Delta-G solvation = -121.855968 kcal
Electronic energy + Delta-G solvation = -30995.790000 eV
Core-core repulsion = 26886.677876 eV
Total energy + Delta-G solvation = -4109.112124 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.177 amu
Computer time = 1.20 seconds
Orbital eigenvalues (eV)
-41.77038 -41.13396 -39.91169 -38.69408 -37.47145 -35.54757 -34.34825 -33.34638
-32.56272 -31.64870 -29.96504 -29.07221 -27.59149 -27.23260 -25.43230 -23.82099
-23.38191 -22.28086 -21.85810 -20.93360 -20.19985 -19.08606 -18.53779 -18.02792
-17.84262 -17.48773 -17.40804 -16.97970 -16.62140 -16.05971 -15.75049 -15.44168
-15.16880 -14.98800 -14.72931 -14.59854 -14.27217 -14.20034 -14.02064 -13.95999
-13.75773 -13.68341 -13.37584 -13.16978 -13.00492 -12.93279 -12.78821 -12.69792
-12.55286 -12.12545 -11.97447 -11.89280 -11.80039 -11.77620 -11.64123 -11.60738
-11.49229 -11.33695 -10.80438 -10.59863 -9.64990 -9.60806 -9.39160 -8.35139
-6.44862 0.60499 0.67830 1.18060 1.33277 1.40410 1.50546 1.74751
1.79555 2.15026 2.32287 2.96892 3.12608 3.36198 3.48602 3.67013
3.85488 4.04922 4.15666 4.18800 4.21556 4.29268 4.30722 4.31927
4.33105 4.39289 4.41428 4.49574 4.50867 4.60712 4.67360 4.70158
4.72203 4.79844 4.81730 4.89060 4.90662 5.07843 5.16079 5.19374
5.31013 5.32662 5.38052 5.41958 5.44070 5.53650 5.67501 5.73154
5.94704 6.18312 6.28196 6.52391 6.63229 6.72256 7.19471 7.31337
8.80231
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.011630 B = 0.003497 C = 0.002988
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2407.028166 B = 8003.834425 C = 9368.253874
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.028 3.972
2 O -0.364 6.364
3 C 0.457 3.543
4 O -0.538 6.538
5 C -0.098 4.098
6 C -0.070 4.070
7 H 0.104 0.896
8 C 0.115 3.885
9 N -0.622 5.622
10 C 0.540 3.460
11 O -0.592 6.592
12 C 0.047 3.953
13 H 0.073 0.927
14 C -0.502 4.502
15 H 0.021 0.979
16 C 0.034 3.966
17 N -0.935 5.935
18 Si 0.919 3.081
19 H -0.246 1.246
20 H -0.289 1.289
21 H -0.225 1.225
22 C -0.072 4.072
23 C -0.100 4.100
24 C -0.139 4.139
25 C -0.132 4.132
26 C -0.127 4.127
27 C -0.143 4.143
28 C 0.091 3.909
29 C -0.088 4.088
30 H 0.090 0.910
31 C -0.136 4.136
32 H 0.131 0.869
33 H 0.064 0.936
34 H 0.052 0.948
35 H 0.117 0.883
36 H 0.153 0.847
37 H 0.049 0.951
38 H 0.041 0.959
39 H 0.271 0.729
40 H 0.084 0.916
41 H 0.131 0.869
42 H 0.152 0.848
43 H 0.152 0.848
44 H 0.128 0.872
45 H 0.069 0.931
46 H 0.085 0.915
47 H 0.067 0.933
48 H 0.086 0.914
49 H 0.063 0.937
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.926 -3.944 16.031 18.767
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.065 4.065
2 O -0.280 6.280
3 C 0.302 3.698
4 O -0.427 6.427
5 C -0.136 4.136
6 C -0.088 4.088
7 H 0.122 0.878
8 C -0.008 4.008
9 N -0.355 5.355
10 C 0.332 3.668
11 O -0.473 6.473
12 C 0.026 3.974
13 H 0.091 0.909
14 C -0.540 4.540
15 H 0.039 0.961
16 C -0.166 4.166
17 N -0.572 5.572
18 Si 0.741 3.259
19 H -0.170 1.170
20 H -0.215 1.215
21 H -0.147 1.147
22 C -0.073 4.073
23 C -0.118 4.118
24 C -0.157 4.157
25 C -0.150 4.150
26 C -0.144 4.144
27 C -0.161 4.161
28 C -0.031 4.031
29 C -0.107 4.107
30 H 0.108 0.892
31 C -0.193 4.193
32 H 0.150 0.850
33 H 0.083 0.917
34 H 0.071 0.929
35 H 0.135 0.865
36 H 0.171 0.829
37 H 0.068 0.932
38 H 0.059 0.941
39 H 0.080 0.920
40 H 0.102 0.898
41 H 0.149 0.851
42 H 0.170 0.830
43 H 0.170 0.830
44 H 0.146 0.854
45 H 0.087 0.913
46 H 0.103 0.897
47 H 0.086 0.914
48 H 0.105 0.895
49 H 0.082 0.918
Dipole moment (debyes) X Y Z Total
from point charges -9.462 -3.674 15.517 18.542
hybrid contribution 0.174 0.067 -0.676 0.701
sum -9.288 -3.606 14.841 17.875
Atomic orbital electron populations
1.23503 0.75175 1.05565 1.02257 1.86497 1.24722 1.32989 1.83829
1.24308 0.93137 0.81084 0.71265 1.90694 1.68153 1.37361 1.46501
1.21521 0.85920 0.97491 1.08637 1.22130 0.96015 0.94423 0.96282
0.87757 1.21969 0.89601 0.92590 0.96630 1.48505 1.20915 1.43800
1.22296 1.21017 0.87511 0.79563 0.78755 1.90539 1.40559 1.68779
1.47439 1.18193 0.91410 0.90735 0.97084 0.90927 1.20343 0.90180
1.22893 1.20555 0.96053 1.25804 0.95942 0.97092 0.97724 1.70019
1.02537 1.42276 1.42393 0.86152 0.79024 0.80857 0.79887 1.16956
1.21536 1.14730 1.20212 0.96542 0.95258 0.95254 1.20885 0.98049
0.97932 0.94962 1.21361 1.01017 0.92851 1.00471 1.21371 1.00500
0.97375 0.95764 1.21390 0.99164 0.98620 0.95265 1.21330 1.01841
0.92260 1.00709 1.22711 0.91335 0.99414 0.89654 1.22451 0.93426
0.95705 0.99091 0.89159 1.21725 1.01353 1.03914 0.92347 0.85043
0.91685 0.92901 0.86485 0.82888 0.93230 0.94094 0.91973 0.89763
0.85059 0.83044 0.83011 0.85378 0.91283 0.89737 0.91445 0.89498
0.91828
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.42 10.56 113.37 1.20 1.62 16
2 O -0.36 -7.09 10.56 -51.35 -0.54 -7.63 16
3 C 0.46 10.18 7.75 71.24 0.55 10.73 16
4 O -0.54 -15.76 14.61 21.98 0.32 -15.44 16
5 C -0.10 -1.65 5.21 29.85 0.16 -1.49 16
6 C -0.07 -1.54 2.03 -9.52 -0.02 -1.56 16
7 H 0.10 2.15 7.92 -2.39 -0.02 2.13 16
8 C 0.11 3.91 5.45 86.73 0.47 4.38 16
9 N -0.62 -24.60 3.33 -811.78 -2.70 -27.30 16
10 C 0.54 26.41 6.86 87.66 0.60 27.01 16
11 O -0.59 -32.73 15.41 -3.02 -0.05 -32.78 16
12 C 0.05 2.30 1.25 -13.03 -0.02 2.28 16
13 H 0.07 3.19 4.16 -2.39 -0.01 3.18 16
14 C -0.50 -28.58 8.22 25.60 0.21 -28.37 16
15 H 0.02 1.42 8.06 -2.91 -0.02 1.39 16
16 C 0.03 1.89 5.47 84.65 0.46 2.35 16
17 N -0.93 -56.11 13.96 21.45 0.30 -55.81 16
18 Si 0.92 39.81 27.02 68.60 1.85 41.67 16
19 H -0.25 -9.52 7.11 99.48 0.71 -8.81 16
20 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16
21 H -0.22 -8.83 4.37 99.48 0.43 -8.39 16
22 C -0.07 -3.37 4.44 -19.87 -0.09 -3.46 16
23 C -0.10 -4.80 8.05 22.27 0.18 -4.62 16
24 C -0.14 -5.41 10.05 22.27 0.22 -5.19 16
25 C -0.13 -4.31 10.05 22.27 0.22 -4.09 16
26 C -0.13 -4.16 10.05 22.27 0.22 -3.93 16
27 C -0.14 -5.63 8.63 22.27 0.19 -5.44 16
28 C 0.09 2.80 5.73 86.86 0.50 3.30 16
29 C -0.09 -1.89 3.09 -9.32 -0.03 -1.91 16
30 H 0.09 1.99 8.05 -2.39 -0.02 1.98 16
31 C -0.14 -1.91 9.30 71.98 0.67 -1.24 16
32 H 0.13 1.07 8.14 -2.38 -0.02 1.06 16
33 H 0.06 0.94 8.13 -2.39 -0.02 0.92 16
34 H 0.05 0.91 8.13 -2.39 -0.02 0.89 16
35 H 0.12 1.90 8.06 -2.38 -0.02 1.88 16
36 H 0.15 1.34 8.14 -2.39 -0.02 1.32 16
37 H 0.05 1.88 7.68 -2.39 -0.02 1.86 16
38 H 0.04 1.50 7.76 -2.39 -0.02 1.49 16
39 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16
40 H 0.08 4.57 7.51 -2.91 -0.02 4.55 16
41 H 0.13 4.39 8.06 -2.91 -0.02 4.37 16
42 H 0.15 3.64 8.06 -2.91 -0.02 3.62 16
43 H 0.15 3.69 8.06 -2.91 -0.02 3.67 16
44 H 0.13 4.48 6.95 -2.91 -0.02 4.46 16
45 H 0.07 2.45 7.52 -2.39 -0.02 2.43 16
46 H 0.08 2.22 8.04 -2.38 -0.02 2.20 16
47 H 0.07 0.86 8.11 -2.38 -0.02 0.84 16
48 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16
49 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16
Total: -1.00 -81.51 396.82 5.56 -75.95
By element:
Atomic # 1 Polarization: 30.30 SS G_CDS: 0.66 Total: 30.97 kcal
Atomic # 6 Polarization: -15.34 SS G_CDS: 5.71 Total: -9.63 kcal
Atomic # 7 Polarization: -80.70 SS G_CDS: -2.40 Total: -83.11 kcal
Atomic # 8 Polarization: -55.58 SS G_CDS: -0.27 Total: -55.85 kcal
Atomic # 14 Polarization: 39.81 SS G_CDS: 1.85 Total: 41.67 kcal
Total: -81.51 5.56 -75.95 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001434371481.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -45.907 kcal
(2) G-P(sol) polarization free energy of solvation -81.507 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.414 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.558 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.949 kcal
(6) G-S(sol) free energy of system = (1) + (5) -121.856 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.20 seconds