Wall clock time and date at job start Wed Apr 1 2020 03:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08993 * 109.55262 * 2 1 4 4 C 1.53182 * 109.55511 * 120.20543 * 2 1 3 5 5 N 1.47108 * 109.64918 * 187.90158 * 4 2 1 6 6 C 1.39523 * 110.52920 * 309.36192 * 5 4 2 7 7 C 1.36011 * 127.82247 * 197.95264 * 6 5 4 8 8 N 1.41254 * 126.14383 * 359.92823 * 7 6 5 9 9 C 1.34773 * 120.00226 * 179.71682 * 8 7 6 10 10 O 1.21623 * 119.99874 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00097 * 179.72594 * 9 8 7 12 12 C 1.40177 * 119.99928 * 180.27522 * 11 9 8 13 13 C 1.40407 * 125.97679 * 359.97438 * 12 11 9 14 14 C 1.35234 * 107.87121 * 179.97438 * 13 12 11 15 15 N 1.34968 * 107.86228 * 359.97438 * 14 13 12 16 16 C 1.46499 * 125.97983 * 180.02562 * 15 14 13 17 17 C 1.50699 * 109.47169 * 125.00014 * 16 15 14 18 18 H 1.08000 * 119.99989 * 359.97438 * 17 16 15 19 19 C 1.37872 * 119.99822 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00233 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00216 * 179.97438 * 19 17 16 22 22 H 1.48510 * 109.47026 * 59.99375 * 21 19 17 23 23 H 1.48494 * 109.47542 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.46769 * 299.99789 * 21 19 17 25 25 N 1.31215 * 125.97416 * 179.68563 * 12 11 9 26 26 C 1.40196 * 107.71343 * 179.66510 * 7 6 5 27 27 N 1.31132 * 108.48197 * 0.26526 * 26 7 6 28 28 N 1.36309 * 124.76745 * 18.08178 * 6 5 4 29 29 C 1.46744 * 124.13210 * 0.15028 * 28 6 5 30 30 H 1.08997 * 109.47325 * 299.79868 * 1 2 3 31 31 H 1.09002 * 109.46990 * 59.80039 * 1 2 3 32 32 H 1.09009 * 109.47039 * 179.79749 * 1 2 3 33 33 H 1.09002 * 109.44661 * 67.84329 * 4 2 1 34 34 H 1.09008 * 109.40815 * 307.93499 * 4 2 1 35 35 H 1.00902 * 111.00004 * 185.74516 * 5 4 2 36 36 H 0.97000 * 119.99662 * 359.71097 * 8 7 6 37 37 H 0.97000 * 119.99736 * 0.26819 * 11 9 8 38 38 H 1.07998 * 126.06046 * 359.97438 * 13 12 11 39 39 H 1.08005 * 126.06978 * 180.02562 * 14 13 12 40 40 H 1.09000 * 109.46904 * 244.99922 * 16 15 14 41 41 H 1.08994 * 109.46881 * 4.99629 * 16 15 14 42 42 H 0.97001 * 120.00221 * 180.02562 * 20 19 17 43 43 H 1.07992 * 125.75664 * 180.22887 * 26 7 6 44 44 H 1.08998 * 109.80249 * 135.21346 * 29 28 6 45 45 H 1.08996 * 109.79594 * 256.07535 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8947 1.0271 0.0000 4 6 2.0427 -0.7262 1.2475 5 7 3.5014 -0.5650 1.3492 6 6 4.1163 -0.9033 0.1433 7 6 5.4249 -1.2069 -0.0692 8 7 6.4424 -1.2392 0.9100 9 6 7.7032 -1.5634 0.5614 10 8 7.9649 -1.8286 -0.5964 11 7 8.6751 -1.5888 1.4948 12 6 9.9877 -1.9203 1.1311 13 6 10.4280 -2.2463 -0.1617 14 6 11.7545 -2.5013 -0.0963 15 7 12.1436 -2.3436 1.1864 16 6 13.5034 -2.5221 1.7014 17 6 13.9365 -1.2705 2.4206 18 1 13.2660 -0.4265 2.4870 19 6 15.1890 -1.2027 2.9928 20 7 16.0056 -2.2304 2.9116 21 14 15.7262 0.3488 3.8837 22 1 14.8004 0.6165 5.0136 23 1 17.1045 0.1679 4.4058 24 1 15.7003 1.4953 2.9402 25 7 11.0207 -1.9751 1.9383 26 6 5.5814 -1.4880 -1.4338 27 7 4.4171 -1.3540 -2.0220 28 7 3.4785 -0.9835 -1.0587 29 6 2.0478 -0.7200 -1.2509 30 1 -0.3634 0.5107 0.8917 31 1 -0.3633 0.5169 -0.8882 32 1 -0.3633 -1.0277 -0.0036 33 1 1.7989 -1.7862 1.1762 34 1 1.5683 -0.3036 2.1333 35 1 3.8734 -1.1124 2.1108 36 1 6.2336 -1.0280 1.8334 37 1 8.4663 -1.3775 2.4182 38 1 9.8159 -2.2863 -1.0505 39 1 12.3898 -2.7808 -0.9238 40 1 13.5222 -3.3638 2.3937 41 1 14.1831 -2.7183 0.8723 42 1 16.8867 -2.1828 3.3145 43 1 6.5050 -1.7672 -1.9187 44 1 1.9023 -0.0971 -2.1335 45 1 1.5119 -1.6616 -1.3703 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434709383.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:40 Heat of formation + Delta-G solvation = 149.068385 kcal Electronic energy + Delta-G solvation = -28883.627955 eV Core-core repulsion = 24747.309152 eV Total energy + Delta-G solvation = -4136.318804 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.96918 -40.67109 -39.53812 -37.92625 -35.39815 -34.71697 -33.98193 -33.28413 -31.69541 -30.84092 -29.28589 -28.68497 -26.76197 -26.30391 -25.68093 -23.43518 -22.40254 -22.13654 -21.18484 -20.15054 -20.01206 -19.42975 -18.00181 -17.78372 -16.71788 -16.62284 -16.54934 -16.06609 -15.76144 -15.56499 -15.06073 -14.93036 -14.66318 -14.39559 -14.35456 -14.07102 -13.81420 -13.44378 -13.07531 -12.90554 -12.69815 -12.33017 -12.31511 -12.19675 -11.80647 -11.73795 -11.62913 -11.11023 -11.02772 -10.88173 -10.82469 -10.63433 -10.38979 -10.23265 -10.02517 -9.64374 -9.48232 -8.94205 -8.60722 -8.10766 -7.65048 -7.32299 -6.21851 -4.26884 1.56384 1.95699 2.41667 2.48983 2.81579 3.19831 3.27391 3.30451 3.30761 3.35234 3.60680 3.78522 3.87662 3.93910 4.26170 4.31313 4.37796 4.50451 4.69455 4.75255 4.79397 4.91710 4.98233 5.13156 5.17229 5.24177 5.27358 5.38769 5.48317 5.56089 5.78287 5.86380 6.02995 6.23311 6.38982 6.56206 6.60227 6.76472 6.85932 6.94505 7.01758 7.11820 7.50152 7.59773 7.71888 7.83748 7.97581 8.09209 8.55430 8.68050 8.83014 9.38596 10.86730 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.025968 B = 0.001818 C = 0.001738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.973361 B =15401.536439 C =16110.986077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.111 4.111 3 H 0.094 0.906 4 C 0.052 3.948 5 N -0.597 5.597 6 C 0.228 3.772 7 C 0.001 3.999 8 N -0.653 5.653 9 C 0.718 3.282 10 O -0.557 6.557 11 N -0.639 5.639 12 C 0.275 3.725 13 C -0.285 4.285 14 C 0.051 3.949 15 N -0.320 5.320 16 C 0.259 3.741 17 C -0.529 4.529 18 H 0.068 0.932 19 C 0.062 3.938 20 N -0.895 5.895 21 Si 0.908 3.092 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.275 1.275 25 N -0.307 5.307 26 C 0.073 3.927 27 N -0.287 5.287 28 N -0.388 5.388 29 C 0.143 3.857 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.050 0.950 34 H 0.098 0.902 35 H 0.367 0.633 36 H 0.404 0.596 37 H 0.407 0.593 38 H 0.162 0.838 39 H 0.168 0.832 40 H 0.045 0.955 41 H 0.057 0.943 42 H 0.267 0.733 43 H 0.212 0.788 44 H 0.096 0.904 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.770 2.005 -3.828 32.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.131 4.131 3 H 0.112 0.888 4 C -0.076 4.076 5 N -0.228 5.228 6 C 0.004 3.996 7 C -0.107 4.107 8 N -0.302 5.302 9 C 0.418 3.582 10 O -0.432 6.432 11 N -0.289 5.289 12 C 0.022 3.978 13 C -0.316 4.316 14 C -0.099 4.099 15 N -0.102 5.102 16 C 0.141 3.859 17 C -0.567 4.567 18 H 0.087 0.913 19 C -0.141 4.141 20 N -0.534 5.534 21 Si 0.735 3.265 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.200 1.200 25 N -0.138 5.138 26 C -0.114 4.114 27 N -0.109 5.109 28 N -0.177 5.177 29 C 0.022 3.978 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.117 0.883 35 H 0.192 0.808 36 H 0.238 0.762 37 H 0.242 0.758 38 H 0.180 0.820 39 H 0.185 0.815 40 H 0.062 0.938 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.228 0.772 44 H 0.114 0.886 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -31.554 2.428 -4.770 32.005 hybrid contribution 0.377 0.190 1.599 1.654 sum -31.177 2.619 -3.171 31.447 Atomic orbital electron populations 1.21713 0.92275 1.02798 1.03234 1.21627 0.97320 1.01232 0.92920 0.88794 1.22233 0.85966 0.99734 0.99631 1.57771 1.05514 1.57026 1.02451 1.18571 0.91033 1.04134 0.85883 1.16561 0.85950 1.17552 0.90595 1.41651 1.05547 1.72793 1.10196 1.15378 0.79537 0.78647 0.84633 1.90747 1.80517 1.54664 1.17260 1.41229 1.04771 1.71628 1.11246 1.18732 0.83906 1.02014 0.93195 1.21514 0.94420 1.17755 0.97921 1.22560 0.95888 1.02331 0.89093 1.49054 1.08259 1.48366 1.04526 1.19728 0.71146 0.98834 0.96157 1.21226 1.00179 0.99798 1.35491 0.91342 1.24939 0.96053 0.97117 0.95957 1.69908 1.08600 1.30110 1.44762 0.86389 0.77516 0.82627 0.79964 1.19972 1.21078 1.20046 1.77324 0.91732 1.25914 1.18813 1.24477 0.97200 0.98742 0.90960 1.77435 0.97612 1.22870 1.13004 1.48408 1.08178 1.56998 1.04153 1.21895 0.75288 1.01208 0.99457 0.91248 0.91448 0.91951 0.93189 0.88349 0.80788 0.76179 0.75779 0.82049 0.81515 0.93762 0.92531 0.92303 0.77201 0.88576 0.90029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.29 9.18 37.16 0.34 0.05 16 2 C -0.11 -0.49 2.90 -90.35 -0.26 -0.75 16 3 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 4 C 0.05 0.23 5.89 -3.62 -0.02 0.21 16 5 N -0.60 -3.95 6.90 -59.61 -0.41 -4.36 16 6 C 0.23 2.31 7.17 -152.20 -1.09 1.22 16 7 C 0.00 0.01 6.93 -83.57 -0.58 -0.57 16 8 N -0.65 -7.20 5.50 -14.23 -0.08 -7.28 16 9 C 0.72 10.53 8.51 -86.92 -0.74 9.79 16 10 O -0.56 -9.64 10.64 5.26 0.06 -9.58 16 11 N -0.64 -9.71 5.45 -15.50 -0.08 -9.80 16 12 C 0.28 5.48 8.11 -154.37 -1.25 4.22 16 13 C -0.28 -5.62 9.61 -39.84 -0.38 -6.00 16 14 C 0.05 1.02 11.44 -17.24 -0.20 0.83 16 15 N -0.32 -7.43 3.67 -62.56 -0.23 -7.66 16 16 C 0.26 6.58 6.26 -5.19 -0.03 6.55 16 17 C -0.53 -14.72 9.23 -34.44 -0.32 -15.04 16 18 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 19 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 20 N -0.90 -25.35 13.29 55.43 0.74 -24.61 16 21 Si 0.91 21.40 29.54 -169.99 -5.02 16.38 16 22 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 N -0.31 -7.01 12.42 31.44 0.39 -6.62 16 26 C 0.07 1.02 10.84 -17.12 -0.19 0.84 16 27 N -0.29 -3.86 12.61 30.74 0.39 -3.48 16 28 N -0.39 -4.10 4.07 -59.79 -0.24 -4.35 16 29 C 0.14 0.92 6.74 -3.73 -0.03 0.90 16 30 H 0.07 0.10 8.14 -51.93 -0.42 -0.32 16 31 H 0.07 0.12 8.14 -51.93 -0.42 -0.31 16 32 H 0.06 0.10 8.14 -51.92 -0.42 -0.32 16 33 H 0.05 0.21 8.13 -51.93 -0.42 -0.21 16 34 H 0.10 0.26 8.13 -51.92 -0.42 -0.17 16 35 H 0.37 1.72 8.76 -39.29 -0.34 1.38 16 36 H 0.40 3.05 8.76 -40.82 -0.36 2.69 16 37 H 0.41 4.90 8.84 -40.82 -0.36 4.54 16 38 H 0.16 3.09 5.91 -52.49 -0.31 2.78 16 39 H 0.17 2.73 8.06 -52.48 -0.42 2.30 16 40 H 0.04 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 42 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 43 H 0.21 3.11 5.92 -52.49 -0.31 2.80 16 44 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.08 0.44 8.08 -51.93 -0.42 0.02 16 LS Contribution 377.31 15.07 5.69 5.69 Total: -1.00 -34.94 377.31 -9.53 -44.47 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -5.87 Total: 7.34 kcal Atomic # 6 Polarization: 8.70 SS G_CDS: -4.84 Total: 3.86 kcal Atomic # 7 Polarization: -68.62 SS G_CDS: 0.47 Total: -68.15 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: 0.06 Total: -9.58 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.94 -9.53 -44.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434709383.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.534 kcal (2) G-P(sol) polarization free energy of solvation -34.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 158.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds