Wall clock time and date at job start Wed Apr 1 2020 02:52:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53009 * 1
3 3 H 1.09002 * 109.49331 * 2 1
4 4 C 1.53042 * 109.49494 * 120.06346 * 2 1 3
5 5 C 1.53042 * 109.53278 * 181.35156 * 4 2 1
6 6 C 1.53188 * 109.31338 * 298.63469 * 5 4 2
7 7 N 1.46921 * 108.77734 * 54.63803 * 6 5 4
8 8 C 1.34773 * 120.63543 * 126.41443 * 7 6 5
9 9 O 1.21282 * 120.00561 * 179.97438 * 8 7 6
10 10 C 1.50703 * 119.99418 * 359.97438 * 8 7 6
11 11 O 1.45205 * 109.46681 * 179.97438 * 10 8 7
12 12 C 1.34231 * 116.99910 * 179.97438 * 11 10 8
13 13 O 1.20835 * 120.00066 * 0.02562 * 12 11 10
14 14 C 1.50697 * 120.00222 * 179.97438 * 12 11 10
15 15 H 1.09002 * 109.47018 * 60.00111 * 14 12 11
16 16 C 1.50697 * 109.47413 * 300.00453 * 14 12 11
17 17 H 1.08003 * 120.00098 * 125.76787 * 16 14 12
18 18 C 1.37877 * 119.99887 * 305.77264 * 16 14 12
19 19 N 1.31514 * 120.00206 * 5.09104 * 18 16 14
20 20 Si 1.86805 * 120.00112 * 185.09096 * 18 16 14
21 21 H 1.48504 * 109.46842 * 0.02562 * 20 18 16
22 22 H 1.48496 * 109.46950 * 119.99919 * 20 18 16
23 23 H 1.48505 * 109.46969 * 239.99840 * 20 18 16
24 24 C 1.50696 * 109.47340 * 180.02562 * 14 12 11
25 25 C 1.38240 * 120.00028 * 294.81341 * 24 14 12
26 26 C 1.38237 * 120.00014 * 179.76693 * 25 24 14
27 27 C 1.38240 * 119.99997 * 0.50185 * 26 25 24
28 28 C 1.38238 * 119.99978 * 359.74907 * 27 26 25
29 29 C 1.38239 * 119.99959 * 0.02562 * 28 27 26
30 30 C 1.46930 * 118.73866 * 306.39279 * 7 6 5
31 31 H 1.08996 * 109.46937 * 299.93407 * 1 2 3
32 32 H 1.08995 * 109.46735 * 59.93618 * 1 2 3
33 33 H 1.09002 * 109.46821 * 179.97438 * 1 2 3
34 34 H 1.09000 * 109.45997 * 301.36709 * 4 2 1
35 35 H 1.08999 * 109.46303 * 61.32973 * 4 2 1
36 36 H 1.08999 * 109.49788 * 58.58929 * 5 4 2
37 37 H 1.09003 * 109.49444 * 178.68361 * 5 4 2
38 38 H 1.09005 * 109.58644 * 294.85192 * 6 5 4
39 39 H 1.08997 * 109.70384 * 174.49567 * 6 5 4
40 40 H 1.08993 * 109.47475 * 299.99705 * 10 8 7
41 41 H 1.08998 * 109.47305 * 60.00641 * 10 8 7
42 42 H 0.97001 * 120.00313 * 180.02562 * 19 18 16
43 43 H 1.08000 * 119.99761 * 359.97438 * 25 24 14
44 44 H 1.07999 * 120.00394 * 180.22292 * 26 25 24
45 45 H 1.07993 * 120.00546 * 179.72519 * 27 26 25
46 46 H 1.07993 * 120.00470 * 179.97438 * 28 27 26
47 47 H 1.07993 * 120.00209 * 179.97438 * 29 28 27
48 48 H 1.09001 * 109.58679 * 293.82227 * 30 7 6
49 49 H 1.09000 * 109.59038 * 173.39674 * 30 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8938 1.0275 0.0000
4 6 2.0408 -0.7227 1.2486
5 6 3.5709 -0.6939 1.2666
6 6 4.1060 -1.4254 0.0316
7 7 3.5054 -0.8282 -1.1689
8 6 4.2819 -0.3852 -2.1775
9 8 3.7740 0.1053 -3.1635
10 6 5.7814 -0.4995 -2.0799
11 8 6.3873 0.0427 -3.2830
12 6 7.7275 0.0167 -3.3552
13 8 8.3729 -0.4444 -2.4436
14 6 8.4271 0.5614 -4.5737
15 1 8.1772 1.6155 -4.6953
16 6 7.9818 -0.2041 -5.7930
17 1 7.5825 0.3240 -6.6463
18 6 8.0841 -1.5789 -5.8192
19 7 8.4755 -2.2297 -4.7455
20 14 7.6667 -2.5170 -7.3797
21 1 7.2561 -1.5595 -8.4380
22 1 8.8592 -3.2758 -7.8350
23 1 6.5535 -3.4613 -7.1068
24 6 9.9173 0.4141 -4.4053
25 6 10.5737 1.1180 -3.4129
26 6 11.9400 0.9792 -3.2552
27 6 12.6516 0.1444 -4.0966
28 6 11.9960 -0.5555 -5.0923
29 6 10.6290 -0.4202 -5.2469
30 6 2.0421 -0.7236 -1.2494
31 1 -0.3633 0.5128 0.8906
32 1 -0.3632 0.5148 -0.8894
33 1 -0.3633 -1.0277 -0.0005
34 1 1.6577 -0.2242 2.1390
35 1 1.6972 -1.7571 1.2356
36 1 3.9154 0.3402 1.2547
37 1 3.9334 -1.1883 2.1679
38 1 3.8387 -2.4806 0.0876
39 1 5.1904 -1.3250 -0.0138
40 1 6.1327 0.0589 -1.2124
41 1 6.0598 -1.5480 -1.9743
42 1 8.5478 -3.1969 -4.7640
43 1 10.0184 1.7738 -2.7587
44 1 12.4523 1.5263 -2.4777
45 1 13.7196 0.0393 -3.9763
46 1 12.5519 -1.2073 -5.7498
47 1 10.1169 -0.9667 -6.0250
48 1 1.6065 -1.7216 -1.2978
49 1 1.7644 -0.1580 -2.1388
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001459547923.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 02:52:53
Heat of formation + Delta-G solvation = -98.256923 kcal
Electronic energy + Delta-G solvation = -30817.949057 eV
Core-core repulsion = 26709.860264 eV
Total energy + Delta-G solvation = -4108.088792 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.177 amu
Computer time = 1.00 seconds
Orbital eigenvalues (eV)
-40.25617 -39.29122 -38.05658 -37.43128 -35.09179 -33.99438 -33.82403 -31.99138
-30.99829 -29.73452 -29.04418 -27.46012 -26.59068 -25.12217 -23.99784 -22.49188
-21.41272 -21.20350 -20.48053 -19.46179 -19.02913 -17.41685 -16.70379 -16.30344
-15.98805 -15.78428 -15.50308 -15.08054 -15.04315 -14.62225 -14.46328 -14.41627
-13.96783 -13.77126 -13.63518 -13.25209 -13.11628 -12.82550 -12.52687 -12.43411
-12.30884 -12.20419 -12.02453 -11.77575 -11.68256 -11.34626 -11.34125 -11.05866
-10.95945 -10.92511 -10.74359 -10.60955 -10.44021 -10.12830 -9.87309 -9.71547
-9.54013 -9.42166 -8.97232 -8.66004 -8.51864 -7.85909 -7.56430 -6.23921
-4.33780 2.35413 2.49475 2.77625 2.78978 3.20645 3.30617 3.35015
3.76592 3.98128 4.29486 4.42353 4.53113 4.58128 4.75697 4.80124
4.95267 5.03518 5.05333 5.18849 5.27140 5.35012 5.42573 5.49658
5.49870 5.57176 5.63524 5.68313 5.75118 5.75691 5.84556 5.84650
5.87101 5.94380 5.95674 6.14004 6.22475 6.39123 6.50084 6.51995
6.68914 6.79055 6.98257 7.12129 7.35133 7.40258 7.54604 7.59605
7.68687 7.76758 8.04296 8.17640 8.32707 8.68372 9.25348 9.32539
10.79362
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.014217 B = 0.002991 C = 0.002635
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1968.983693 B = 9358.995487 C =10623.587922
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C -0.108 4.108
3 H 0.075 0.925
4 C -0.114 4.114
5 C -0.136 4.136
6 C 0.103 3.897
7 N -0.617 5.617
8 C 0.520 3.480
9 O -0.512 6.512
10 C 0.053 3.947
11 O -0.330 6.330
12 C 0.499 3.501
13 O -0.522 6.522
14 C 0.084 3.916
15 H 0.071 0.929
16 C -0.521 4.521
17 H 0.075 0.925
18 C 0.066 3.934
19 N -0.861 5.861
20 Si 0.895 3.105
21 H -0.267 1.267
22 H -0.280 1.280
23 H -0.282 1.282
24 C -0.026 4.026
25 C -0.114 4.114
26 C -0.142 4.142
27 C -0.139 4.139
28 C -0.147 4.147
29 C -0.054 4.054
30 C 0.118 3.882
31 H 0.057 0.943
32 H 0.058 0.942
33 H 0.056 0.944
34 H 0.064 0.936
35 H 0.064 0.936
36 H 0.068 0.932
37 H 0.076 0.924
38 H 0.071 0.929
39 H 0.088 0.912
40 H 0.085 0.915
41 H 0.092 0.908
42 H 0.268 0.732
43 H 0.103 0.897
44 H 0.104 0.896
45 H 0.103 0.897
46 H 0.105 0.895
47 H 0.139 0.861
48 H 0.065 0.935
49 H 0.093 0.907
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.575 1.908 11.484 14.459
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.127 4.127
3 H 0.093 0.907
4 C -0.152 4.152
5 C -0.174 4.174
6 C -0.020 4.020
7 N -0.354 5.354
8 C 0.307 3.693
9 O -0.386 6.386
10 C -0.025 4.025
11 O -0.247 6.247
12 C 0.343 3.657
13 O -0.409 6.409
14 C 0.064 3.936
15 H 0.089 0.911
16 C -0.559 4.559
17 H 0.093 0.907
18 C -0.139 4.139
19 N -0.496 5.496
20 Si 0.721 3.279
21 H -0.191 1.191
22 H -0.206 1.206
23 H -0.207 1.207
24 C -0.026 4.026
25 C -0.132 4.132
26 C -0.160 4.160
27 C -0.157 4.157
28 C -0.165 4.165
29 C -0.072 4.072
30 C -0.004 4.004
31 H 0.076 0.924
32 H 0.077 0.923
33 H 0.075 0.925
34 H 0.083 0.917
35 H 0.083 0.917
36 H 0.087 0.913
37 H 0.095 0.905
38 H 0.089 0.911
39 H 0.106 0.894
40 H 0.103 0.897
41 H 0.110 0.890
42 H 0.078 0.922
43 H 0.121 0.879
44 H 0.122 0.878
45 H 0.121 0.879
46 H 0.123 0.877
47 H 0.156 0.844
48 H 0.084 0.916
49 H 0.111 0.889
Dipole moment (debyes) X Y Z Total
from point charges -8.613 1.834 11.280 14.310
hybrid contribution -0.155 -1.050 -0.266 1.095
sum -8.768 0.784 11.013 14.099
Atomic orbital electron populations
1.21759 0.94403 1.02014 1.02056 1.21524 0.95910 1.00284 0.95013
0.90699 1.21587 0.95203 1.00820 0.97546 1.21930 0.96168 1.01619
0.97703 1.21800 0.98808 0.97238 0.84128 1.48009 1.06570 1.62400
1.18419 1.20402 0.88837 0.77562 0.82461 1.90718 1.75069 1.42693
1.30122 1.22345 0.89584 1.01225 0.89375 1.86660 1.24498 1.74808
1.38699 1.24478 0.78647 0.74842 0.87707 1.90490 1.66231 1.43907
1.40292 1.17593 0.88068 0.97317 0.90588 0.91142 1.20839 1.43960
0.91352 0.99704 0.90661 1.25084 0.94088 0.97879 0.96884 1.70018
1.44015 1.08657 1.26916 0.86460 0.78288 0.80008 0.83126 1.19118
1.20560 1.20747 1.19769 0.95113 0.94246 0.93501 1.20902 0.94101
1.00396 0.97824 1.20783 0.94433 1.00832 0.99980 1.20838 0.98510
0.99108 0.97272 1.21087 0.95394 1.00831 0.99212 1.21455 0.92068
0.94679 0.98983 1.21621 0.79155 1.00688 0.98974 0.92395 0.92290
0.92501 0.91685 0.91711 0.91298 0.90495 0.91092 0.89358 0.89747
0.89006 0.92207 0.87899 0.87767 0.87894 0.87720 0.84354 0.91637
0.88854
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.05 9.20 37.16 0.34 -0.71 16
2 C -0.11 -0.97 2.87 -90.50 -0.26 -1.23 16
3 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16
4 C -0.11 -0.87 5.17 -26.69 -0.14 -1.00 16
5 C -0.14 -1.11 6.08 -26.61 -0.16 -1.28 16
6 C 0.10 1.06 6.34 -3.72 -0.02 1.04 16
7 N -0.62 -8.34 2.97 -172.77 -0.51 -8.86 16
8 C 0.52 9.41 7.78 -10.99 -0.09 9.32 16
9 O -0.51 -11.28 15.92 -14.11 -0.22 -11.50 16
10 C 0.05 1.01 4.29 36.01 0.15 1.17 16
11 O -0.33 -7.98 9.67 -45.91 -0.44 -8.43 16
12 C 0.50 12.56 5.47 36.00 0.20 12.75 16
13 O -0.52 -13.66 14.91 -18.76 -0.28 -13.94 16
14 C 0.08 2.07 2.77 -94.08 -0.26 1.81 16
15 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16
16 C -0.52 -13.58 7.75 -34.44 -0.27 -13.84 16
17 H 0.08 1.93 7.82 -52.48 -0.41 1.52 16
18 C 0.07 1.72 3.19 -17.82 -0.06 1.66 16
19 N -0.86 -23.43 10.41 55.43 0.58 -22.86 16
20 Si 0.89 20.48 29.54 -169.99 -5.02 15.46 16
21 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16
22 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16
23 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16
24 C -0.03 -0.61 4.50 -104.62 -0.47 -1.08 16
25 C -0.11 -2.45 8.75 -39.58 -0.35 -2.80 16
26 C -0.14 -2.74 10.05 -39.58 -0.40 -3.14 16
27 C -0.14 -2.64 10.05 -39.58 -0.40 -3.04 16
28 C -0.15 -3.03 10.05 -39.58 -0.40 -3.43 16
29 C -0.05 -1.27 8.00 -39.58 -0.32 -1.59 16
30 C 0.12 1.37 5.72 -3.71 -0.02 1.34 16
31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16
32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16
33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16
34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16
35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16
36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16
37 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16
38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16
39 H 0.09 0.93 5.93 -51.93 -0.31 0.63 16
40 H 0.08 1.41 7.69 -51.93 -0.40 1.01 16
41 H 0.09 1.76 7.93 -51.93 -0.41 1.35 16
42 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16
43 H 0.10 2.06 8.06 -52.49 -0.42 1.64 16
44 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16
45 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16
46 H 0.10 1.90 8.06 -52.49 -0.42 1.48 16
47 H 0.14 3.45 4.97 -52.49 -0.26 3.19 16
48 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16
49 H 0.09 1.26 7.01 -51.93 -0.36 0.90 16
LS Contribution 394.21 15.07 5.94 5.94
Total: -1.00 -32.23 394.21 -10.50 -42.73
By element:
Atomic # 1 Polarization: 13.11 SS G_CDS: -7.63 Total: 5.48 kcal
Atomic # 6 Polarization: -1.13 SS G_CDS: -2.91 Total: -4.03 kcal
Atomic # 7 Polarization: -31.77 SS G_CDS: 0.06 Total: -31.71 kcal
Atomic # 8 Polarization: -32.92 SS G_CDS: -0.95 Total: -33.87 kcal
Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal
Total LS contribution 5.94 Total: 5.94 kcal
Total: -32.23 -10.50 -42.73 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001459547923.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -55.525 kcal
(2) G-P(sol) polarization free energy of solvation -32.228 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.753 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.504 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.732 kcal
(6) G-S(sol) free energy of system = (1) + (5) -98.257 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.00 seconds