Wall clock time and date at job start Wed Apr 1 2020 02:52:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53009 * 1
3 3 H 1.09002 * 109.49331 * 2 1
4 4 C 1.53042 * 109.49494 * 120.06346 * 2 1 3
5 5 C 1.53042 * 109.53278 * 181.35156 * 4 2 1
6 6 C 1.53188 * 109.31338 * 298.63469 * 5 4 2
7 7 N 1.46921 * 108.77734 * 54.63803 * 6 5 4
8 8 C 1.34773 * 120.63543 * 126.41443 * 7 6 5
9 9 O 1.21282 * 120.00561 * 179.97438 * 8 7 6
10 10 C 1.50703 * 119.99418 * 359.97438 * 8 7 6
11 11 O 1.45205 * 109.46681 * 179.97438 * 10 8 7
12 12 C 1.34231 * 116.99910 * 179.97438 * 11 10 8
13 13 O 1.20835 * 120.00066 * 0.02562 * 12 11 10
14 14 C 1.50697 * 120.00222 * 179.97438 * 12 11 10
15 15 H 1.09002 * 109.47018 * 60.00111 * 14 12 11
16 16 C 1.50697 * 109.47413 * 300.00453 * 14 12 11
17 17 H 1.08003 * 120.00098 * 125.76787 * 16 14 12
18 18 C 1.37877 * 119.99887 * 305.77264 * 16 14 12
19 19 N 1.31514 * 120.00206 * 5.09104 * 18 16 14
20 20 Si 1.86805 * 120.00112 * 185.09096 * 18 16 14
21 21 H 1.48504 * 109.46842 * 0.02562 * 20 18 16
22 22 H 1.48496 * 109.46950 * 119.99919 * 20 18 16
23 23 H 1.48505 * 109.46969 * 239.99840 * 20 18 16
24 24 C 1.50696 * 109.47340 * 180.02562 * 14 12 11
25 25 C 1.38240 * 120.00028 * 294.81341 * 24 14 12
26 26 C 1.38237 * 120.00014 * 179.76693 * 25 24 14
27 27 C 1.38240 * 119.99997 * 0.50185 * 26 25 24
28 28 C 1.38238 * 119.99978 * 359.74907 * 27 26 25
29 29 C 1.38239 * 119.99959 * 0.02562 * 28 27 26
30 30 C 1.46930 * 118.73866 * 306.39279 * 7 6 5
31 31 H 1.08996 * 109.46937 * 299.93407 * 1 2 3
32 32 H 1.08995 * 109.46735 * 59.93618 * 1 2 3
33 33 H 1.09002 * 109.46821 * 179.97438 * 1 2 3
34 34 H 1.09000 * 109.45997 * 301.36709 * 4 2 1
35 35 H 1.08999 * 109.46303 * 61.32973 * 4 2 1
36 36 H 1.08999 * 109.49788 * 58.58929 * 5 4 2
37 37 H 1.09003 * 109.49444 * 178.68361 * 5 4 2
38 38 H 1.09005 * 109.58644 * 294.85192 * 6 5 4
39 39 H 1.08997 * 109.70384 * 174.49567 * 6 5 4
40 40 H 1.08993 * 109.47475 * 299.99705 * 10 8 7
41 41 H 1.08998 * 109.47305 * 60.00641 * 10 8 7
42 42 H 0.97001 * 120.00313 * 180.02562 * 19 18 16
43 43 H 1.08000 * 119.99761 * 359.97438 * 25 24 14
44 44 H 1.07999 * 120.00394 * 180.22292 * 26 25 24
45 45 H 1.07993 * 120.00546 * 179.72519 * 27 26 25
46 46 H 1.07993 * 120.00470 * 179.97438 * 28 27 26
47 47 H 1.07993 * 120.00209 * 179.97438 * 29 28 27
48 48 H 1.09001 * 109.58679 * 293.82227 * 30 7 6
49 49 H 1.09000 * 109.59038 * 173.39674 * 30 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8938 1.0275 0.0000
4 6 2.0408 -0.7227 1.2486
5 6 3.5709 -0.6939 1.2666
6 6 4.1060 -1.4254 0.0316
7 7 3.5054 -0.8282 -1.1689
8 6 4.2819 -0.3852 -2.1775
9 8 3.7740 0.1053 -3.1635
10 6 5.7814 -0.4995 -2.0799
11 8 6.3873 0.0427 -3.2830
12 6 7.7275 0.0167 -3.3552
13 8 8.3729 -0.4444 -2.4436
14 6 8.4271 0.5614 -4.5737
15 1 8.1772 1.6155 -4.6953
16 6 7.9818 -0.2041 -5.7930
17 1 7.5825 0.3240 -6.6463
18 6 8.0841 -1.5789 -5.8192
19 7 8.4755 -2.2297 -4.7455
20 14 7.6667 -2.5170 -7.3797
21 1 7.2561 -1.5595 -8.4380
22 1 8.8592 -3.2758 -7.8350
23 1 6.5535 -3.4613 -7.1068
24 6 9.9173 0.4141 -4.4053
25 6 10.5737 1.1180 -3.4129
26 6 11.9400 0.9792 -3.2552
27 6 12.6516 0.1444 -4.0966
28 6 11.9960 -0.5555 -5.0923
29 6 10.6290 -0.4202 -5.2469
30 6 2.0421 -0.7236 -1.2494
31 1 -0.3633 0.5128 0.8906
32 1 -0.3632 0.5148 -0.8894
33 1 -0.3633 -1.0277 -0.0005
34 1 1.6577 -0.2242 2.1390
35 1 1.6972 -1.7571 1.2356
36 1 3.9154 0.3402 1.2547
37 1 3.9334 -1.1883 2.1679
38 1 3.8387 -2.4806 0.0876
39 1 5.1904 -1.3250 -0.0138
40 1 6.1327 0.0589 -1.2124
41 1 6.0598 -1.5480 -1.9743
42 1 8.5478 -3.1969 -4.7640
43 1 10.0184 1.7738 -2.7587
44 1 12.4523 1.5263 -2.4777
45 1 13.7196 0.0393 -3.9763
46 1 12.5519 -1.2073 -5.7498
47 1 10.1169 -0.9667 -6.0250
48 1 1.6065 -1.7216 -1.2978
49 1 1.7644 -0.1580 -2.1388
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001459547923.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 02:52:52
Heat of formation + Delta-G solvation = -113.940314 kcal
Electronic energy + Delta-G solvation = -30818.629140 eV
Core-core repulsion = 26709.860264 eV
Total energy + Delta-G solvation = -4108.768875 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.177 amu
Computer time = 1.19 seconds
Orbital eigenvalues (eV)
-41.64065 -40.95676 -39.64561 -38.67429 -36.93926 -35.73543 -34.98637 -32.84521
-32.81573 -31.37079 -30.49050 -29.12278 -27.45855 -26.34983 -25.77286 -23.28378
-23.05478 -22.84661 -21.46144 -21.21940 -20.17078 -19.20151 -18.20910 -17.92311
-17.61737 -17.35981 -17.03056 -16.80986 -16.24812 -16.00161 -15.72090 -15.46984
-15.39518 -15.35645 -14.72919 -14.60883 -14.28775 -14.14745 -14.08097 -13.84572
-13.65021 -13.50072 -13.40443 -13.08900 -12.98882 -12.77160 -12.70633 -12.57365
-12.30752 -12.05281 -11.85538 -11.84888 -11.67849 -11.60836 -11.53142 -11.33609
-11.31605 -10.99387 -10.87192 -10.48278 -9.77264 -9.47931 -9.22982 -8.23721
-6.38229 0.73334 0.87019 1.34456 1.35583 1.40618 1.46905 1.51326
1.86486 2.35828 2.44173 3.06303 3.25946 3.34658 3.72730 3.82471
3.87150 3.97648 4.02621 4.07727 4.25551 4.26698 4.33086 4.37190
4.42808 4.50773 4.53219 4.62841 4.64366 4.76780 4.79085 4.85788
4.86209 4.91295 4.92365 5.08398 5.09914 5.16365 5.24008 5.30170
5.35477 5.42827 5.48552 5.51609 5.59854 5.75179 5.81630 5.86273
5.92814 6.14345 6.32944 6.45476 6.67241 6.95250 7.27194 7.36385
8.78888
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.014217 B = 0.002991 C = 0.002635
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1968.983693 B = 9358.995487 C =10623.587922
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C -0.102 4.102
3 H 0.060 0.940
4 C -0.110 4.110
5 C -0.131 4.131
6 C 0.093 3.907
7 N -0.604 5.604
8 C 0.518 3.482
9 O -0.564 6.564
10 C 0.052 3.948
11 O -0.353 6.353
12 C 0.501 3.499
13 O -0.538 6.538
14 C 0.072 3.928
15 H 0.075 0.925
16 C -0.535 4.535
17 H 0.068 0.932
18 C 0.036 3.964
19 N -0.884 5.884
20 Si 0.946 3.054
21 H -0.263 1.263
22 H -0.269 1.269
23 H -0.288 1.288
24 C -0.050 4.050
25 C -0.128 4.128
26 C -0.138 4.138
27 C -0.132 4.132
28 C -0.152 4.152
29 C -0.081 4.081
30 C 0.112 3.888
31 H 0.071 0.929
32 H 0.051 0.949
33 H 0.067 0.933
34 H 0.082 0.918
35 H 0.077 0.923
36 H 0.059 0.941
37 H 0.102 0.898
38 H 0.090 0.910
39 H 0.083 0.917
40 H 0.108 0.892
41 H 0.089 0.911
42 H 0.265 0.735
43 H 0.109 0.891
44 H 0.141 0.859
45 H 0.144 0.856
46 H 0.126 0.874
47 H 0.116 0.884
48 H 0.083 0.917
49 H 0.067 0.933
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.045 1.319 13.563 15.825
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C -0.122 4.122
3 H 0.078 0.922
4 C -0.148 4.148
5 C -0.169 4.169
6 C -0.028 4.028
7 N -0.339 5.339
8 C 0.306 3.694
9 O -0.442 6.442
10 C -0.026 4.026
11 O -0.270 6.270
12 C 0.347 3.653
13 O -0.427 6.427
14 C 0.053 3.947
15 H 0.093 0.907
16 C -0.572 4.572
17 H 0.087 0.913
18 C -0.167 4.167
19 N -0.519 5.519
20 Si 0.771 3.229
21 H -0.187 1.187
22 H -0.194 1.194
23 H -0.214 1.214
24 C -0.051 4.051
25 C -0.146 4.146
26 C -0.156 4.156
27 C -0.150 4.150
28 C -0.170 4.170
29 C -0.099 4.099
30 C -0.010 4.010
31 H 0.090 0.910
32 H 0.070 0.930
33 H 0.086 0.914
34 H 0.101 0.899
35 H 0.095 0.905
36 H 0.078 0.922
37 H 0.120 0.880
38 H 0.109 0.891
39 H 0.101 0.899
40 H 0.125 0.875
41 H 0.107 0.893
42 H 0.074 0.926
43 H 0.127 0.873
44 H 0.159 0.841
45 H 0.162 0.838
46 H 0.144 0.856
47 H 0.134 0.866
48 H 0.101 0.899
49 H 0.086 0.914
Dipole moment (debyes) X Y Z Total
from point charges -8.103 1.240 13.404 15.711
hybrid contribution -0.337 -0.854 -0.822 1.233
sum -8.440 0.386 12.581 15.155
Atomic orbital electron populations
1.21736 0.92821 1.02831 1.02439 1.21483 0.97137 0.99208 0.94332
0.92190 1.21596 0.94517 1.01502 0.97141 1.21929 0.96722 1.01009
0.97244 1.22136 0.98650 0.98479 0.83578 1.48102 1.07272 1.60478
1.18028 1.20287 0.88545 0.77682 0.82913 1.90690 1.75623 1.45561
1.32350 1.22589 0.90407 1.01151 0.88410 1.86606 1.24182 1.75088
1.41091 1.24467 0.78883 0.74431 0.87544 1.90444 1.66627 1.44725
1.40879 1.17722 0.89393 0.97376 0.90202 0.90732 1.21003 1.44143
0.91950 1.00120 0.91347 1.25593 0.93760 0.98328 0.99051 1.70125
1.45042 1.08411 1.28353 0.85665 0.78032 0.78766 0.80406 1.18738
1.19431 1.21392 1.19762 0.94402 0.95852 0.95065 1.21077 0.95499
1.00499 0.97513 1.21220 0.93498 1.00397 1.00444 1.21287 1.00495
0.97479 0.95729 1.21374 0.94357 1.01209 1.00094 1.21385 0.93624
0.95665 0.99272 1.21846 0.77813 1.01711 0.99596 0.90954 0.93026
0.91444 0.89911 0.90472 0.92200 0.87988 0.89148 0.89860 0.87459
0.89267 0.92598 0.87332 0.84083 0.83799 0.85558 0.86626 0.89876
0.91416
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.77 9.20 71.99 0.66 -1.11 16
2 C -0.10 -1.69 2.87 -10.71 -0.03 -1.72 16
3 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16
4 C -0.11 -1.34 5.17 30.62 0.16 -1.18 16
5 C -0.13 -1.82 6.08 30.67 0.19 -1.63 16
6 C 0.09 1.78 6.34 86.36 0.55 2.33 16
7 N -0.60 -16.29 2.97 -818.92 -2.43 -18.72 16
8 C 0.52 19.45 7.78 87.66 0.68 20.13 16
9 O -0.56 -26.21 15.92 15.76 0.25 -25.96 16
10 C 0.05 2.05 4.29 71.24 0.31 2.36 16
11 O -0.35 -17.83 9.67 -45.07 -0.44 -18.26 16
12 C 0.50 26.12 5.47 71.23 0.39 26.51 16
13 O -0.54 -28.80 14.91 21.94 0.33 -28.47 16
14 C 0.07 3.73 2.77 -13.04 -0.04 3.69 16
15 H 0.07 3.60 8.14 -2.39 -0.02 3.58 16
16 C -0.53 -28.99 7.75 25.60 0.20 -28.79 16
17 H 0.07 3.68 7.82 -2.91 -0.02 3.65 16
18 C 0.04 1.91 3.19 84.65 0.27 2.18 16
19 N -0.88 -49.38 10.41 21.45 0.22 -49.15 16
20 Si 0.95 43.01 29.54 68.60 2.03 45.03 16
21 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16
22 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16
23 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16
24 C -0.05 -2.44 4.50 -19.86 -0.09 -2.53 16
25 C -0.13 -5.43 8.75 22.27 0.19 -5.23 16
26 C -0.14 -4.95 10.05 22.27 0.22 -4.72 16
27 C -0.13 -4.59 10.05 22.27 0.22 -4.37 16
28 C -0.15 -6.07 10.05 22.27 0.22 -5.84 16
29 C -0.08 -3.89 8.00 22.27 0.18 -3.71 16
30 C 0.11 2.56 5.72 86.36 0.49 3.05 16
31 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16
32 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16
33 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16
34 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16
35 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16
36 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16
37 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16
38 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16
39 H 0.08 1.69 5.93 -2.39 -0.01 1.67 16
40 H 0.11 3.66 7.69 -2.39 -0.02 3.64 16
41 H 0.09 3.54 7.93 -2.39 -0.02 3.52 16
42 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16
43 H 0.11 4.35 8.06 -2.91 -0.02 4.33 16
44 H 0.14 3.98 8.06 -2.91 -0.02 3.96 16
45 H 0.14 3.82 8.06 -2.91 -0.02 3.79 16
46 H 0.13 4.35 8.06 -2.91 -0.02 4.32 16
47 H 0.12 5.95 4.97 -2.91 -0.01 5.94 16
48 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16
49 H 0.07 1.92 7.01 -2.39 -0.02 1.90 16
Total: -1.00 -72.71 394.21 5.68 -67.04
By element:
Atomic # 1 Polarization: 28.15 SS G_CDS: 0.94 Total: 29.09 kcal
Atomic # 6 Polarization: -5.37 SS G_CDS: 4.78 Total: -0.59 kcal
Atomic # 7 Polarization: -65.66 SS G_CDS: -2.21 Total: -67.87 kcal
Atomic # 8 Polarization: -72.84 SS G_CDS: 0.14 Total: -72.70 kcal
Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.03 kcal
Total: -72.71 5.68 -67.04 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001459547923.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -46.905 kcal
(2) G-P(sol) polarization free energy of solvation -72.712 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.617 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.677 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.035 kcal
(6) G-S(sol) free energy of system = (1) + (5) -113.940 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.19 seconds