Wall clock time and date at job start Wed Apr 1 2020 02:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.52536 * 2 1 4 4 C 1.53033 * 109.50026 * 239.91120 * 2 1 3 5 5 C 1.53039 * 109.54106 * 178.68846 * 4 2 1 6 6 C 1.53194 * 109.31125 * 61.36506 * 5 4 2 7 7 N 1.46921 * 108.77664 * 305.36352 * 6 5 4 8 8 C 1.34773 * 120.63524 * 233.63370 * 7 6 5 9 9 O 1.21283 * 119.99934 * 179.97438 * 8 7 6 10 10 C 1.50699 * 119.99860 * 359.97290 * 8 7 6 11 11 O 1.45199 * 109.47109 * 180.02562 * 10 8 7 12 12 C 1.34228 * 116.99904 * 180.02562 * 11 10 8 13 13 O 1.20829 * 120.00117 * 359.97438 * 12 11 10 14 14 C 1.50701 * 120.00190 * 180.02562 * 12 11 10 15 15 H 1.08995 * 109.46859 * 299.99950 * 14 12 11 16 16 C 1.50700 * 109.46883 * 59.99873 * 14 12 11 17 17 H 1.08003 * 120.00298 * 34.16497 * 16 14 12 18 18 C 1.37880 * 119.99834 * 214.16920 * 16 14 12 19 19 N 1.31514 * 120.00129 * 6.39523 * 18 16 14 20 20 Si 1.86802 * 119.99992 * 186.40507 * 18 16 14 21 21 H 1.48497 * 109.47516 * 59.99163 * 20 18 16 22 22 H 1.48496 * 109.47188 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46773 * 299.99013 * 20 18 16 24 24 C 1.50695 * 109.47297 * 179.97438 * 14 12 11 25 25 C 1.38237 * 120.00439 * 293.85633 * 24 14 12 26 26 C 1.38230 * 120.00233 * 179.76658 * 25 24 14 27 27 C 1.38230 * 120.00261 * 0.48593 * 26 25 24 28 28 C 1.38240 * 119.99746 * 359.79102 * 27 26 25 29 29 C 1.38234 * 120.00138 * 359.95312 * 28 27 26 30 30 C 1.46930 * 118.73607 * 53.61133 * 7 6 5 31 31 H 1.09000 * 109.47235 * 299.92646 * 1 2 3 32 32 H 1.09000 * 109.46475 * 59.92264 * 1 2 3 33 33 H 1.08991 * 109.47401 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.46282 * 298.70953 * 4 2 1 35 35 H 1.09004 * 109.45862 * 58.66489 * 4 2 1 36 36 H 1.09002 * 109.49546 * 301.41193 * 5 4 2 37 37 H 1.09002 * 109.52809 * 181.33700 * 5 4 2 38 38 H 1.08999 * 109.58294 * 185.57948 * 6 5 4 39 39 H 1.08994 * 109.58650 * 65.15679 * 6 5 4 40 40 H 1.08998 * 109.47500 * 300.00849 * 10 8 7 41 41 H 1.09002 * 109.46603 * 60.00708 * 10 8 7 42 42 H 0.96997 * 120.00095 * 180.02562 * 19 18 16 43 43 H 1.08005 * 119.99741 * 0.02562 * 25 24 14 44 44 H 1.08007 * 119.99731 * 180.25670 * 26 25 24 45 45 H 1.08003 * 120.00459 * 179.76858 * 27 26 25 46 46 H 1.08002 * 120.00259 * 179.97438 * 28 27 26 47 47 H 1.08001 * 120.00322 * 179.97438 * 29 28 27 48 48 H 1.08999 * 109.59042 * 186.60079 * 30 7 6 49 49 H 1.09006 * 109.58755 * 66.17748 * 30 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0409 -0.7232 -1.2482 5 6 3.5709 -0.6953 -1.2658 6 6 4.1052 -1.4269 -0.0304 7 7 3.5046 -0.8291 1.1698 8 6 4.2810 -0.3855 2.1781 9 8 3.7730 0.1064 3.1634 10 6 5.7805 -0.5007 2.0813 11 8 6.3863 0.0425 3.2838 12 6 7.7264 0.0157 3.3565 13 8 8.3717 -0.4467 2.4457 14 6 8.4260 0.5614 4.5747 15 1 8.1767 1.6156 4.6950 16 6 7.9798 -0.2028 5.7946 17 1 7.7495 -1.2552 5.7183 18 6 7.8656 0.4417 7.0081 19 7 8.0230 1.7455 7.0776 20 14 7.4873 -0.5371 8.5535 21 1 8.5592 -1.5398 8.7792 22 1 7.4174 0.3826 9.7173 23 1 6.1850 -1.2324 8.3927 24 6 9.9162 0.4130 4.4068 25 6 10.4851 -0.8462 4.3645 26 6 11.8514 -0.9823 4.2056 27 6 12.6502 0.1408 4.0992 28 6 12.0821 1.4001 4.1473 29 6 10.7150 1.5362 4.3008 30 6 2.0412 -0.7237 1.2497 31 1 -0.3634 0.5127 0.8906 32 1 -0.3632 0.5151 -0.8893 33 1 -0.3634 -1.0276 -0.0005 34 1 1.6967 -1.7574 -1.2351 35 1 1.6582 -0.2247 -2.1388 36 1 3.9160 0.3386 -1.2540 37 1 3.9340 -1.1896 -2.1668 38 1 5.1895 -1.3248 0.0141 39 1 3.8374 -2.4819 -0.0863 40 1 6.0583 -1.5495 1.9766 41 1 6.1323 0.0567 1.2131 42 1 7.9430 2.1989 7.9314 43 1 9.8614 -1.7237 4.4513 44 1 12.2953 -1.9663 4.1684 45 1 13.7183 0.0345 3.9788 46 1 12.7061 2.2776 4.0645 47 1 10.2712 2.5200 4.3388 48 1 1.7636 -0.1578 2.1389 49 1 1.6051 -1.7215 1.2982 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001459547931.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:59 Heat of formation + Delta-G solvation = -122.726154 kcal Electronic energy + Delta-G solvation = -30260.999568 eV Core-core repulsion = 26151.849710 eV Total energy + Delta-G solvation = -4109.149858 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.81417 -41.08774 -39.74316 -38.72112 -37.24672 -35.64362 -35.00379 -33.02633 -32.81841 -31.58307 -30.58212 -29.17134 -27.47237 -26.36745 -25.75653 -23.31731 -23.28044 -23.07191 -21.48910 -21.29792 -20.19043 -19.10072 -18.56462 -18.11648 -17.59318 -17.47401 -17.35124 -16.71722 -16.24661 -16.18501 -15.78506 -15.63241 -15.39382 -15.31714 -14.84358 -14.55811 -14.30955 -14.13080 -14.07479 -13.89951 -13.70690 -13.50688 -13.39839 -13.38374 -13.01364 -12.84899 -12.80911 -12.71238 -12.27672 -12.05090 -12.04605 -11.86436 -11.80356 -11.75569 -11.67601 -11.40382 -11.33214 -11.14359 -10.93199 -10.68878 -9.77545 -9.60124 -9.36962 -8.28372 -6.38822 0.67436 0.72454 1.28039 1.33054 1.38333 1.42088 1.43017 1.50281 2.25974 2.38591 3.02345 3.20302 3.28062 3.72266 3.81939 3.86211 3.92617 3.96884 4.03361 4.17048 4.25704 4.27414 4.28078 4.38731 4.40890 4.45746 4.52460 4.63973 4.76919 4.79724 4.80122 4.86111 4.90377 4.90431 5.02808 5.08330 5.16349 5.23841 5.27751 5.30004 5.35204 5.39683 5.44782 5.52034 5.56503 5.75130 5.77073 5.83221 6.12423 6.14060 6.35339 6.61317 6.90806 6.98854 7.27130 8.81374 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012162 B = 0.002876 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.708329 B = 9732.560153 C =11358.985252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.104 4.104 3 H 0.056 0.944 4 C -0.110 4.110 5 C -0.133 4.133 6 C 0.093 3.907 7 N -0.603 5.603 8 C 0.515 3.485 9 O -0.566 6.566 10 C 0.041 3.959 11 O -0.345 6.345 12 C 0.480 3.520 13 O -0.538 6.538 14 C 0.076 3.924 15 H 0.075 0.925 16 C -0.524 4.524 17 H 0.055 0.945 18 C 0.031 3.969 19 N -0.907 5.907 20 Si 0.959 3.041 21 H -0.264 1.264 22 H -0.276 1.276 23 H -0.274 1.274 24 C -0.049 4.049 25 C -0.109 4.109 26 C -0.130 4.130 27 C -0.135 4.135 28 C -0.126 4.126 29 C -0.139 4.139 30 C 0.112 3.888 31 H 0.049 0.951 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.056 0.944 37 H 0.103 0.897 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.112 0.888 41 H 0.114 0.886 42 H 0.270 0.730 43 H 0.099 0.901 44 H 0.141 0.859 45 H 0.152 0.848 46 H 0.144 0.856 47 H 0.108 0.892 48 H 0.064 0.936 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.808 -6.259 -17.913 20.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.123 4.123 3 H 0.075 0.925 4 C -0.148 4.148 5 C -0.171 4.171 6 C -0.029 4.029 7 N -0.338 5.338 8 C 0.302 3.698 9 O -0.445 6.445 10 C -0.036 4.036 11 O -0.260 6.260 12 C 0.326 3.674 13 O -0.429 6.429 14 C 0.056 3.944 15 H 0.093 0.907 16 C -0.561 4.561 17 H 0.073 0.927 18 C -0.171 4.171 19 N -0.544 5.544 20 Si 0.783 3.217 21 H -0.189 1.189 22 H -0.201 1.201 23 H -0.199 1.199 24 C -0.049 4.049 25 C -0.127 4.127 26 C -0.148 4.148 27 C -0.153 4.153 28 C -0.144 4.144 29 C -0.157 4.157 30 C -0.010 4.010 31 H 0.068 0.932 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.075 0.925 37 H 0.122 0.878 38 H 0.107 0.893 39 H 0.114 0.886 40 H 0.130 0.870 41 H 0.132 0.868 42 H 0.079 0.921 43 H 0.117 0.883 44 H 0.159 0.841 45 H 0.169 0.831 46 H 0.161 0.839 47 H 0.126 0.874 48 H 0.083 0.917 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.925 -5.982 -17.549 19.792 hybrid contribution -0.492 -0.074 1.082 1.191 sum -7.417 -6.056 -16.468 19.049 Atomic orbital electron populations 1.21737 0.92951 1.02892 1.02312 1.21485 0.97084 0.99141 0.94575 0.92526 1.21591 0.94714 1.01534 0.96917 1.21945 0.96582 1.00998 0.97602 1.22186 0.98849 0.98621 0.83200 1.48111 1.07186 1.60404 1.18074 1.20316 0.88653 0.77833 0.82976 1.90742 1.75653 1.45378 1.32682 1.22873 0.90493 1.02207 0.87993 1.86713 1.23219 1.74676 1.41428 1.24861 0.79657 0.74566 0.88303 1.90504 1.66667 1.45406 1.40320 1.17763 0.88584 0.99535 0.88496 0.90747 1.20692 1.47535 0.95494 0.92380 0.92656 1.25660 0.93533 0.95774 1.02096 1.69960 1.48736 1.08750 1.26960 0.85593 0.78964 0.78776 0.78377 1.18877 1.20121 1.19887 1.19949 0.95006 0.94054 0.95926 1.20896 0.95662 0.96365 0.99770 1.21352 0.92796 1.00022 1.00637 1.21353 1.00712 0.91888 1.01331 1.21323 0.93832 0.98774 1.00457 1.21145 0.95052 0.97640 1.01882 1.21838 0.77963 1.01808 0.99356 0.93233 0.91080 0.91245 0.90229 0.90184 0.92487 0.87828 0.89280 0.88571 0.86974 0.86828 0.92103 0.88258 0.84076 0.83054 0.83865 0.87421 0.91735 0.89478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.20 71.98 0.66 -1.06 16 2 C -0.10 -1.62 2.87 -10.72 -0.03 -1.66 16 3 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 4 C -0.11 -1.18 5.17 30.62 0.16 -1.02 16 5 C -0.13 -1.56 6.08 30.67 0.19 -1.37 16 6 C 0.09 1.42 6.34 86.36 0.55 1.97 16 7 N -0.60 -14.58 2.97 -818.90 -2.43 -17.02 16 8 C 0.51 17.89 7.78 87.66 0.68 18.57 16 9 O -0.57 -25.82 15.91 15.76 0.25 -25.57 16 10 C 0.04 1.43 4.29 71.24 0.31 1.73 16 11 O -0.34 -16.43 9.67 -45.04 -0.44 -16.87 16 12 C 0.48 23.55 7.14 71.24 0.51 24.06 16 13 O -0.54 -25.42 15.17 21.96 0.33 -25.09 16 14 C 0.08 4.00 2.55 -13.03 -0.03 3.97 16 15 H 0.07 4.32 7.00 -2.39 -0.02 4.30 16 16 C -0.52 -29.52 7.59 25.60 0.19 -29.32 16 17 H 0.06 3.11 7.82 -2.91 -0.02 3.09 16 18 C 0.03 1.76 5.45 84.66 0.46 2.22 16 19 N -0.91 -52.82 12.78 21.45 0.27 -52.54 16 20 Si 0.96 44.61 29.54 68.60 2.03 46.64 16 21 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 22 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 23 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 24 C -0.05 -2.35 4.30 -19.87 -0.09 -2.43 16 25 C -0.11 -4.80 8.31 22.27 0.19 -4.62 16 26 C -0.13 -4.63 10.05 22.27 0.22 -4.41 16 27 C -0.14 -4.32 10.05 22.27 0.22 -4.09 16 28 C -0.13 -4.42 10.05 22.27 0.22 -4.19 16 29 C -0.14 -6.05 9.67 22.27 0.22 -5.83 16 30 C 0.11 2.39 5.72 86.36 0.49 2.88 16 31 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 36 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.09 1.35 5.93 -2.39 -0.01 1.33 16 39 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.11 3.38 7.94 -2.39 -0.02 3.36 16 41 H 0.11 3.36 7.68 -2.39 -0.02 3.34 16 42 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 43 H 0.10 4.51 7.89 -2.91 -0.02 4.48 16 44 H 0.14 4.01 8.06 -2.91 -0.02 3.99 16 45 H 0.15 3.53 8.06 -2.91 -0.02 3.51 16 46 H 0.14 3.97 8.06 -2.91 -0.02 3.94 16 47 H 0.11 4.68 7.96 -2.91 -0.02 4.66 16 48 H 0.06 1.78 7.00 -2.39 -0.02 1.77 16 49 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 Total: -1.00 -75.47 403.10 6.07 -69.40 By element: Atomic # 1 Polarization: 24.72 SS G_CDS: 0.93 Total: 25.65 kcal Atomic # 6 Polarization: -9.72 SS G_CDS: 5.12 Total: -4.60 kcal Atomic # 7 Polarization: -67.40 SS G_CDS: -2.16 Total: -69.56 kcal Atomic # 8 Polarization: -67.68 SS G_CDS: 0.15 Total: -67.53 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -75.47 6.07 -69.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001459547931.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.326 kcal (2) G-P(sol) polarization free energy of solvation -75.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds