Wall clock time and date at job start Wed Apr 1 2020 04:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45196 * 109.47450 * 2 1 4 4 C 1.34225 * 117.00400 * 179.97438 * 3 2 1 5 5 O 1.20825 * 119.99895 * 0.02562 * 4 3 2 6 6 C 1.50697 * 120.00002 * 179.97438 * 4 3 2 7 7 H 1.09003 * 109.46820 * 60.00695 * 6 4 3 8 8 C 1.50700 * 109.46875 * 179.97438 * 6 4 3 9 9 O 1.21282 * 120.00178 * 0.02562 * 8 6 4 10 10 N 1.34782 * 120.00119 * 180.02562 * 8 6 4 11 11 C 1.46924 * 120.62740 * 359.97438 * 10 8 6 12 12 C 1.53202 * 108.77736 * 126.41177 * 11 10 8 13 13 C 1.53034 * 109.30858 * 54.63266 * 12 11 10 14 14 C 1.53044 * 109.53946 * 298.63566 * 13 12 11 15 15 H 1.08995 * 109.52404 * 301.39631 * 14 13 12 16 16 C 1.50702 * 109.49873 * 181.31984 * 14 13 12 17 17 H 1.08002 * 120.00299 * 240.16717 * 16 14 13 18 18 C 1.37884 * 119.99942 * 59.88276 * 16 14 13 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 14 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 14 21 21 H 1.48496 * 109.47341 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.46983 * 120.00379 * 20 18 16 23 23 H 1.48503 * 109.47491 * 240.00192 * 20 18 16 24 24 C 1.46923 * 120.63096 * 180.02562 * 10 8 6 25 25 C 1.50695 * 109.47726 * 300.00492 * 6 4 3 26 26 C 1.38238 * 119.99725 * 299.72578 * 25 6 4 27 27 C 1.38237 * 120.00127 * 179.80633 * 26 25 6 28 28 C 1.38238 * 119.99602 * 0.42182 * 27 26 25 29 29 C 1.38238 * 120.00055 * 359.80999 * 28 27 26 30 30 C 1.38228 * 120.00099 * 0.02562 * 29 28 27 31 31 H 1.08997 * 109.47288 * 60.00136 * 1 2 3 32 32 H 1.09002 * 109.47095 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46992 * 299.99655 * 1 2 3 34 34 H 1.09007 * 109.47074 * 240.00317 * 2 1 3 35 35 H 1.08999 * 109.47053 * 120.00790 * 2 1 3 36 36 H 1.09003 * 109.59046 * 246.19536 * 11 10 8 37 37 H 1.09003 * 109.59078 * 6.62255 * 11 10 8 38 38 H 1.08994 * 109.49779 * 174.58369 * 12 11 10 39 39 H 1.09004 * 109.49190 * 294.68169 * 12 11 10 40 40 H 1.09000 * 109.45818 * 178.61950 * 13 12 11 41 41 H 1.08997 * 109.46678 * 58.65936 * 13 12 11 42 42 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 43 43 H 1.08997 * 109.58612 * 113.80625 * 24 10 8 44 44 H 1.08998 * 109.59126 * 353.37465 * 24 10 8 45 45 H 1.07998 * 120.00297 * 0.02562 * 26 25 6 46 46 H 1.07996 * 120.00365 * 180.20685 * 27 26 25 47 47 H 1.08001 * 119.99832 * 179.78711 * 28 27 26 48 48 H 1.08002 * 119.99879 * 179.97438 * 29 28 27 49 49 H 1.07997 * 120.00169 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9373 0.0000 7 1 3.5844 3.4699 0.8896 8 6 5.4256 2.8584 0.0014 9 8 5.9762 1.7778 0.0022 10 7 6.1598 3.9887 0.0017 11 6 5.5072 5.3051 0.0001 12 6 6.0580 6.1300 1.1677 13 6 7.5844 6.1850 1.0726 14 6 8.1548 4.7682 1.1707 15 1 7.8462 4.3157 2.1131 16 6 9.6594 4.8263 1.1096 17 1 10.1879 4.3158 0.3180 18 6 10.3611 5.5361 2.0608 19 7 9.7176 6.1578 3.0247 20 14 12.2257 5.6145 1.9806 21 1 12.7039 4.8375 0.8090 22 1 12.6563 7.0293 1.8449 23 1 12.7994 5.0397 3.2239 24 6 7.6277 3.9279 0.0025 25 6 3.4568 3.6725 -1.2310 26 6 3.7710 3.1857 -2.4861 27 6 3.3421 3.8579 -3.6154 28 6 2.6064 5.0214 -3.4895 29 6 2.2964 5.5107 -2.2343 30 6 2.7224 4.8368 -1.1051 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8901 35 1 1.8933 -0.5140 0.8899 36 1 5.7174 5.8161 -0.9395 37 1 4.4308 5.1796 0.1172 38 1 5.6539 7.1412 1.1212 39 1 5.7686 5.6649 2.1101 40 1 7.9774 6.7918 1.8884 41 1 7.8733 6.6275 0.1194 42 1 10.2113 6.6569 3.6941 43 1 8.0105 4.3269 -0.9368 44 1 7.9506 2.8937 0.1212 45 1 4.3485 2.2785 -2.5845 46 1 3.5847 3.4758 -4.5960 47 1 2.2743 5.5484 -4.3717 48 1 1.7220 6.4200 -2.1359 49 1 2.4805 5.2192 -0.1245 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001470047343.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:33 Heat of formation + Delta-G solvation = -92.297981 kcal Electronic energy + Delta-G solvation = -31505.740805 eV Core-core repulsion = 27397.910411 eV Total energy + Delta-G solvation = -4107.830393 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.16191 -39.63079 -38.81717 -37.04008 -36.16186 -34.00698 -33.06632 -31.76130 -31.29946 -31.09835 -30.08469 -28.44810 -25.16075 -24.73205 -23.56968 -22.84612 -22.17417 -21.70818 -21.40734 -19.74431 -18.33279 -18.00012 -17.22070 -16.66423 -16.47051 -16.24100 -15.98030 -15.59274 -15.12611 -14.68675 -14.56928 -14.34827 -14.03866 -13.65522 -13.51824 -13.39792 -13.30106 -12.98168 -12.88051 -12.77658 -12.66580 -12.41769 -12.02748 -12.00143 -11.91951 -11.75017 -11.39716 -11.22849 -10.99294 -10.85405 -10.71110 -10.60425 -10.43736 -10.23546 -9.97060 -9.77511 -9.51858 -9.42854 -9.05408 -8.87774 -8.64103 -8.38363 -7.88999 -6.02062 -4.08737 1.08063 1.23848 2.23227 2.40990 2.96109 3.29046 3.37243 3.41149 3.47125 3.69741 4.38293 4.43095 4.53757 4.59350 4.73728 4.75794 4.81621 4.87209 4.96878 5.03871 5.08374 5.26760 5.30380 5.35436 5.44459 5.48899 5.55612 5.64638 5.71637 5.74352 5.80573 5.86044 6.10152 6.25874 6.31318 6.32790 6.35196 6.36831 6.40795 6.48099 6.66127 6.78700 6.80386 6.96061 7.16396 7.32572 7.69372 7.80832 7.89334 7.97927 8.07453 8.37226 8.60231 8.94975 9.56111 11.03515 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014034 B = 0.003170 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.663059 B = 8829.372668 C = 9847.168090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.062 3.938 3 O -0.357 6.357 4 C 0.469 3.531 5 O -0.455 6.455 6 C -0.063 4.063 7 H 0.135 0.865 8 C 0.517 3.483 9 O -0.507 6.507 10 N -0.594 5.594 11 C 0.102 3.898 12 C -0.136 4.136 13 C -0.112 4.112 14 C 0.040 3.960 15 H 0.030 0.970 16 C -0.512 4.512 17 H 0.058 0.942 18 C 0.063 3.937 19 N -0.889 5.889 20 Si 0.892 3.108 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C 0.119 3.881 25 C -0.073 4.073 26 C -0.103 4.103 27 C -0.114 4.114 28 C -0.114 4.114 29 C -0.117 4.117 30 C -0.099 4.099 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.096 0.904 41 H 0.035 0.965 42 H 0.260 0.740 43 H 0.056 0.944 44 H 0.079 0.921 45 H 0.121 0.879 46 H 0.124 0.876 47 H 0.123 0.877 48 H 0.126 0.874 49 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.418 -2.006 -9.427 23.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.012 4.012 3 O -0.275 6.275 4 C 0.308 3.692 5 O -0.337 6.337 6 C -0.085 4.085 7 H 0.153 0.847 8 C 0.301 3.699 9 O -0.382 6.382 10 N -0.326 5.326 11 C -0.020 4.020 12 C -0.174 4.174 13 C -0.150 4.150 14 C 0.021 3.979 15 H 0.048 0.952 16 C -0.551 4.551 17 H 0.076 0.924 18 C -0.138 4.138 19 N -0.528 5.528 20 Si 0.720 3.280 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.210 1.210 24 C -0.001 4.001 25 C -0.074 4.074 26 C -0.121 4.121 27 C -0.132 4.132 28 C -0.132 4.132 29 C -0.135 4.135 30 C -0.117 4.117 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.094 0.906 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.114 0.886 41 H 0.054 0.946 42 H 0.069 0.931 43 H 0.074 0.926 44 H 0.098 0.902 45 H 0.139 0.861 46 H 0.142 0.858 47 H 0.141 0.859 48 H 0.144 0.856 49 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -20.842 -2.834 -9.276 22.988 hybrid contribution 1.014 0.135 0.110 1.029 sum -19.828 -2.699 -9.166 22.010 Atomic orbital electron populations 1.21789 0.92661 1.02828 1.03479 1.23001 0.95207 0.80341 1.02665 1.86482 1.24223 1.32206 1.84588 1.22655 0.80840 0.91379 0.74375 1.90825 1.59591 1.41674 1.41611 1.20014 0.95785 0.92265 1.00481 0.84722 1.19433 0.86905 0.84940 0.78643 1.90828 1.71724 1.26995 1.48603 1.48160 1.08230 1.04783 1.71464 1.22039 0.96586 0.83768 0.99646 1.22029 1.00132 0.98120 0.97118 1.21625 0.90103 1.01294 1.01998 1.18989 0.94977 0.91231 0.92689 0.95206 1.21115 0.90825 1.31596 1.11576 0.92419 1.24934 0.98395 0.95320 0.95184 1.69882 1.35083 1.33412 1.14397 0.86527 0.85724 0.77670 0.78034 1.19724 1.21061 1.21032 1.22043 0.75257 1.02379 1.00444 1.19077 0.99828 0.96106 0.92390 1.21056 0.98989 1.00121 0.91949 1.21095 0.98163 0.95643 0.98316 1.21197 0.98262 0.96133 0.97613 1.21098 1.00154 0.99956 0.92244 1.21021 0.97088 0.94258 0.99359 0.91529 0.90333 0.91471 0.91318 0.91200 0.91889 0.90648 0.92415 0.92393 0.88612 0.94574 0.93051 0.92577 0.90208 0.86107 0.85848 0.85926 0.85572 0.85238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 10.29 37.16 0.38 -0.68 16 2 C 0.06 0.64 6.19 37.16 0.23 0.87 16 3 O -0.36 -4.60 10.14 -39.25 -0.40 -5.00 16 4 C 0.47 7.31 6.89 36.00 0.25 7.56 16 5 O -0.45 -8.79 13.93 -26.86 -0.37 -9.16 16 6 C -0.06 -0.92 2.08 -94.08 -0.20 -1.11 16 7 H 0.14 1.62 7.43 -51.93 -0.39 1.23 16 8 C 0.52 9.73 6.71 -10.98 -0.07 9.66 16 9 O -0.51 -11.64 13.60 -18.96 -0.26 -11.90 16 10 N -0.59 -11.08 2.97 -172.73 -0.51 -11.60 16 11 C 0.10 1.58 5.46 -3.71 -0.02 1.56 16 12 C -0.14 -2.36 6.08 -26.61 -0.16 -2.52 16 13 C -0.11 -2.49 4.96 -26.69 -0.13 -2.62 16 14 C 0.04 0.99 2.25 -91.62 -0.21 0.78 16 15 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 16 C -0.51 -13.90 8.57 -34.44 -0.29 -14.20 16 17 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 18 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 19 N -0.89 -24.88 11.31 55.43 0.63 -24.25 16 20 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 21 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 24 C 0.12 2.61 5.66 -3.68 -0.02 2.59 16 25 C -0.07 -0.91 3.46 -104.63 -0.36 -1.27 16 26 C -0.10 -1.31 8.92 -39.58 -0.35 -1.67 16 27 C -0.11 -1.19 10.05 -39.58 -0.40 -1.59 16 28 C -0.11 -1.02 10.05 -39.58 -0.40 -1.42 16 29 C -0.12 -1.03 10.05 -39.58 -0.40 -1.42 16 30 C -0.10 -0.99 7.73 -39.59 -0.31 -1.30 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 35 H 0.07 0.73 8.13 -51.93 -0.42 0.31 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.08 0.94 3.10 -51.93 -0.16 0.78 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.10 2.41 6.04 -51.93 -0.31 2.10 16 41 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 43 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.08 1.89 7.01 -51.93 -0.36 1.53 16 45 H 0.12 1.72 8.05 -52.49 -0.42 1.30 16 46 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 47 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 48 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 49 H 0.13 1.03 7.51 -52.49 -0.39 0.64 16 LS Contribution 392.40 15.07 5.91 5.91 Total: -1.00 -33.04 392.40 -10.08 -43.11 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -7.50 Total: 1.87 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: -2.55 Total: -5.15 kcal Atomic # 7 Polarization: -35.96 SS G_CDS: 0.11 Total: -35.84 kcal Atomic # 8 Polarization: -25.03 SS G_CDS: -1.03 Total: -26.06 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.04 -10.08 -43.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001470047343.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.185 kcal (2) G-P(sol) polarization free energy of solvation -33.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds