Wall clock time and date at job start Wed Apr 1 2020 04:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45196 * 109.47450 * 2 1 4 4 C 1.34225 * 117.00400 * 179.97438 * 3 2 1 5 5 O 1.20825 * 119.99895 * 0.02562 * 4 3 2 6 6 C 1.50697 * 120.00002 * 179.97438 * 4 3 2 7 7 H 1.09003 * 109.46820 * 60.00695 * 6 4 3 8 8 C 1.50700 * 109.46875 * 179.97438 * 6 4 3 9 9 O 1.21282 * 120.00178 * 0.02562 * 8 6 4 10 10 N 1.34782 * 120.00119 * 180.02562 * 8 6 4 11 11 C 1.46924 * 120.62740 * 359.97438 * 10 8 6 12 12 C 1.53202 * 108.77736 * 126.41177 * 11 10 8 13 13 C 1.53034 * 109.30858 * 54.63266 * 12 11 10 14 14 C 1.53044 * 109.53946 * 298.63566 * 13 12 11 15 15 H 1.08995 * 109.52404 * 301.39631 * 14 13 12 16 16 C 1.50702 * 109.49873 * 181.31984 * 14 13 12 17 17 H 1.08002 * 120.00299 * 240.16717 * 16 14 13 18 18 C 1.37884 * 119.99942 * 59.88276 * 16 14 13 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 14 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 14 21 21 H 1.48496 * 109.47341 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.46983 * 120.00379 * 20 18 16 23 23 H 1.48503 * 109.47491 * 240.00192 * 20 18 16 24 24 C 1.46923 * 120.63096 * 180.02562 * 10 8 6 25 25 C 1.50695 * 109.47726 * 300.00492 * 6 4 3 26 26 C 1.38238 * 119.99725 * 299.72578 * 25 6 4 27 27 C 1.38237 * 120.00127 * 179.80633 * 26 25 6 28 28 C 1.38238 * 119.99602 * 0.42182 * 27 26 25 29 29 C 1.38238 * 120.00055 * 359.80999 * 28 27 26 30 30 C 1.38228 * 120.00099 * 0.02562 * 29 28 27 31 31 H 1.08997 * 109.47288 * 60.00136 * 1 2 3 32 32 H 1.09002 * 109.47095 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46992 * 299.99655 * 1 2 3 34 34 H 1.09007 * 109.47074 * 240.00317 * 2 1 3 35 35 H 1.08999 * 109.47053 * 120.00790 * 2 1 3 36 36 H 1.09003 * 109.59046 * 246.19536 * 11 10 8 37 37 H 1.09003 * 109.59078 * 6.62255 * 11 10 8 38 38 H 1.08994 * 109.49779 * 174.58369 * 12 11 10 39 39 H 1.09004 * 109.49190 * 294.68169 * 12 11 10 40 40 H 1.09000 * 109.45818 * 178.61950 * 13 12 11 41 41 H 1.08997 * 109.46678 * 58.65936 * 13 12 11 42 42 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 43 43 H 1.08997 * 109.58612 * 113.80625 * 24 10 8 44 44 H 1.08998 * 109.59126 * 353.37465 * 24 10 8 45 45 H 1.07998 * 120.00297 * 0.02562 * 26 25 6 46 46 H 1.07996 * 120.00365 * 180.20685 * 27 26 25 47 47 H 1.08001 * 119.99832 * 179.78711 * 28 27 26 48 48 H 1.08002 * 119.99879 * 179.97438 * 29 28 27 49 49 H 1.07997 * 120.00169 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9373 0.0000 7 1 3.5844 3.4699 0.8896 8 6 5.4256 2.8584 0.0014 9 8 5.9762 1.7778 0.0022 10 7 6.1598 3.9887 0.0017 11 6 5.5072 5.3051 0.0001 12 6 6.0580 6.1300 1.1677 13 6 7.5844 6.1850 1.0726 14 6 8.1548 4.7682 1.1707 15 1 7.8462 4.3157 2.1131 16 6 9.6594 4.8263 1.1096 17 1 10.1879 4.3158 0.3180 18 6 10.3611 5.5361 2.0608 19 7 9.7176 6.1578 3.0247 20 14 12.2257 5.6145 1.9806 21 1 12.7039 4.8375 0.8090 22 1 12.6563 7.0293 1.8449 23 1 12.7994 5.0397 3.2239 24 6 7.6277 3.9279 0.0025 25 6 3.4568 3.6725 -1.2310 26 6 3.7710 3.1857 -2.4861 27 6 3.3421 3.8579 -3.6154 28 6 2.6064 5.0214 -3.4895 29 6 2.2964 5.5107 -2.2343 30 6 2.7224 4.8368 -1.1051 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8901 35 1 1.8933 -0.5140 0.8899 36 1 5.7174 5.8161 -0.9395 37 1 4.4308 5.1796 0.1172 38 1 5.6539 7.1412 1.1212 39 1 5.7686 5.6649 2.1101 40 1 7.9774 6.7918 1.8884 41 1 7.8733 6.6275 0.1194 42 1 10.2113 6.6569 3.6941 43 1 8.0105 4.3269 -0.9368 44 1 7.9506 2.8937 0.1212 45 1 4.3485 2.2785 -2.5845 46 1 3.5847 3.4758 -4.5960 47 1 2.2743 5.5484 -4.3717 48 1 1.7220 6.4200 -2.1359 49 1 2.4805 5.2192 -0.1245 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001470047343.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:31 Heat of formation + Delta-G solvation = -109.570408 kcal Electronic energy + Delta-G solvation = -31506.489793 eV Core-core repulsion = 27397.910411 eV Total energy + Delta-G solvation = -4108.579382 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.38574 -40.87145 -39.85028 -38.54375 -37.49100 -35.55046 -34.51612 -32.95408 -32.52468 -31.98994 -31.69322 -29.45853 -27.09975 -26.22726 -24.53653 -23.69940 -23.27665 -23.02179 -22.66457 -21.28766 -19.86835 -19.13468 -18.43869 -18.21193 -17.76406 -17.50087 -17.20414 -16.70617 -16.50509 -16.38210 -15.64924 -15.47046 -15.11906 -15.08899 -14.90486 -14.65502 -14.47805 -14.25717 -14.06899 -13.98313 -13.68385 -13.58255 -13.49643 -13.38180 -12.90249 -12.89445 -12.69743 -12.57640 -12.53227 -12.30186 -12.01107 -11.90395 -11.85720 -11.63674 -11.55616 -11.51226 -11.23056 -10.92498 -10.77803 -10.44332 -9.82647 -9.62837 -9.52198 -8.11433 -6.26047 0.26736 0.47599 1.03919 1.28167 1.38705 1.41286 1.50962 1.53139 2.16537 2.43222 2.78971 3.15063 3.32186 3.40173 3.60847 3.78069 3.97466 4.05002 4.06823 4.09553 4.18565 4.25449 4.31408 4.32734 4.34539 4.52880 4.58425 4.60415 4.67511 4.78992 4.81366 4.86287 4.91990 4.96055 4.97130 5.11002 5.12485 5.13164 5.27905 5.37821 5.46085 5.52483 5.54126 5.55342 5.61523 5.62425 5.93385 6.06550 6.13613 6.34294 6.44700 6.64206 6.82627 7.12091 7.41696 8.92422 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014034 B = 0.003170 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.663059 B = 8829.372668 C = 9847.168090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.051 3.949 3 O -0.347 6.347 4 C 0.472 3.528 5 O -0.503 6.503 6 C -0.054 4.054 7 H 0.166 0.834 8 C 0.511 3.489 9 O -0.559 6.559 10 N -0.595 5.595 11 C 0.106 3.894 12 C -0.128 4.128 13 C -0.105 4.105 14 C 0.043 3.957 15 H -0.012 1.012 16 C -0.538 4.538 17 H 0.049 0.951 18 C 0.019 3.981 19 N -0.911 5.911 20 Si 0.954 3.046 21 H -0.271 1.271 22 H -0.274 1.274 23 H -0.283 1.283 24 C 0.132 3.868 25 C -0.089 4.089 26 C -0.127 4.127 27 C -0.121 4.121 28 C -0.108 4.108 29 C -0.108 4.108 30 C -0.098 4.098 31 H 0.071 0.929 32 H 0.100 0.900 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.114 0.886 38 H 0.095 0.905 39 H 0.049 0.951 40 H 0.065 0.935 41 H 0.037 0.963 42 H 0.262 0.738 43 H 0.061 0.939 44 H 0.049 0.951 45 H 0.088 0.912 46 H 0.134 0.866 47 H 0.152 0.848 48 H 0.161 0.839 49 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.484 0.634 -10.506 26.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.022 4.022 3 O -0.264 6.264 4 C 0.313 3.687 5 O -0.389 6.389 6 C -0.076 4.076 7 H 0.184 0.816 8 C 0.298 3.702 9 O -0.437 6.437 10 N -0.327 5.327 11 C -0.015 4.015 12 C -0.166 4.166 13 C -0.144 4.144 14 C 0.024 3.976 15 H 0.006 0.994 16 C -0.577 4.577 17 H 0.068 0.932 18 C -0.181 4.181 19 N -0.550 5.550 20 Si 0.780 3.220 21 H -0.196 1.196 22 H -0.199 1.199 23 H -0.209 1.209 24 C 0.010 3.990 25 C -0.090 4.090 26 C -0.146 4.146 27 C -0.139 4.139 28 C -0.126 4.126 29 C -0.126 4.126 30 C -0.116 4.116 31 H 0.090 0.910 32 H 0.119 0.881 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.132 0.868 38 H 0.114 0.886 39 H 0.067 0.933 40 H 0.083 0.917 41 H 0.055 0.945 42 H 0.071 0.929 43 H 0.079 0.921 44 H 0.068 0.932 45 H 0.106 0.894 46 H 0.152 0.848 47 H 0.170 0.830 48 H 0.179 0.821 49 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -23.958 -0.157 -10.362 26.103 hybrid contribution 1.913 -0.725 0.398 2.084 sum -22.045 -0.882 -9.964 24.208 Atomic orbital electron populations 1.21801 0.89506 1.04465 1.04002 1.23334 0.97565 0.79109 1.02227 1.86478 1.22442 1.33699 1.83817 1.22939 0.81403 0.91408 0.72988 1.90811 1.60833 1.43243 1.44058 1.19939 0.91957 0.92444 1.03217 0.81633 1.20204 0.88976 0.83962 0.77071 1.90801 1.73303 1.28959 1.50682 1.48180 1.06833 1.06462 1.71193 1.22273 0.98308 0.81565 0.99374 1.21953 0.96371 1.00669 0.97586 1.21419 0.93757 0.98515 1.00663 1.18880 0.94112 0.93103 0.91538 0.99393 1.21448 0.92574 1.31862 1.11773 0.93245 1.25655 1.02629 0.94950 0.94839 1.70004 1.36565 1.33660 1.14750 0.85571 0.80581 0.78027 0.77861 1.19568 1.19927 1.20889 1.21588 0.77924 0.99987 0.99487 1.18973 1.01839 0.97413 0.90763 1.20972 1.00214 0.99910 0.93477 1.21286 0.98367 0.96294 0.97994 1.21591 0.96701 0.95087 0.99182 1.21531 0.99111 1.00529 0.91409 1.21335 0.95964 0.92877 1.01391 0.91031 0.88149 0.90812 0.91943 0.91694 0.90531 0.86813 0.88627 0.93257 0.91672 0.94466 0.92878 0.92087 0.93245 0.89406 0.84814 0.83040 0.82109 0.82431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 10.29 71.98 0.74 -0.97 16 2 C 0.05 1.05 6.19 71.98 0.45 1.50 16 3 O -0.35 -8.75 10.14 -51.37 -0.52 -9.27 16 4 C 0.47 15.06 6.89 71.23 0.49 15.55 16 5 O -0.50 -20.74 13.93 29.72 0.41 -20.33 16 6 C -0.05 -1.53 2.08 -13.04 -0.03 -1.55 16 7 H 0.17 3.56 7.43 -2.39 -0.02 3.54 16 8 C 0.51 19.91 6.71 87.66 0.59 20.50 16 9 O -0.56 -27.60 13.60 20.40 0.28 -27.32 16 10 N -0.59 -22.50 2.97 -818.79 -2.43 -24.93 16 11 C 0.11 3.02 5.46 86.37 0.47 3.49 16 12 C -0.13 -4.18 6.08 30.67 0.19 -3.99 16 13 C -0.11 -4.70 4.96 30.62 0.15 -4.55 16 14 C 0.04 2.20 2.25 -11.44 -0.03 2.17 16 15 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 16 C -0.54 -30.37 8.57 25.60 0.22 -30.15 16 17 H 0.05 2.79 7.74 -2.91 -0.02 2.76 16 18 C 0.02 1.03 5.30 84.66 0.45 1.48 16 19 N -0.91 -52.13 11.31 21.45 0.24 -51.89 16 20 Si 0.95 44.19 29.54 68.60 2.03 46.22 16 21 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 22 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 23 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 24 C 0.13 6.09 5.66 86.38 0.49 6.58 16 25 C -0.09 -2.04 3.46 -19.87 -0.07 -2.11 16 26 C -0.13 -3.20 8.92 22.27 0.20 -3.00 16 27 C -0.12 -2.29 10.05 22.27 0.22 -2.07 16 28 C -0.11 -1.47 10.05 22.27 0.22 -1.24 16 29 C -0.11 -1.30 10.05 22.27 0.22 -1.08 16 30 C -0.10 -1.50 7.73 22.27 0.17 -1.33 16 31 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 35 H 0.06 1.39 8.13 -2.39 -0.02 1.37 16 36 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.11 2.39 3.10 -2.39 -0.01 2.38 16 38 H 0.10 2.46 8.14 -2.39 -0.02 2.45 16 39 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 40 H 0.06 3.33 6.04 -2.39 -0.01 3.31 16 41 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.26 14.19 8.31 -92.70 -0.77 13.42 16 43 H 0.06 2.70 8.14 -2.39 -0.02 2.68 16 44 H 0.05 2.54 7.01 -2.39 -0.02 2.52 16 45 H 0.09 2.72 8.05 -2.91 -0.02 2.70 16 46 H 0.13 2.11 8.06 -2.91 -0.02 2.09 16 47 H 0.15 1.20 8.06 -2.91 -0.02 1.17 16 48 H 0.16 0.91 8.06 -2.91 -0.02 0.89 16 49 H 0.16 1.52 7.51 -2.91 -0.02 1.50 16 Total: -1.00 -78.74 392.40 6.10 -72.64 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: 0.94 Total: 15.67 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: 5.15 Total: -0.78 kcal Atomic # 7 Polarization: -74.63 SS G_CDS: -2.19 Total: -76.82 kcal Atomic # 8 Polarization: -57.10 SS G_CDS: 0.17 Total: -56.92 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -78.74 6.10 -72.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001470047343.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.931 kcal (2) G-P(sol) polarization free energy of solvation -78.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds