Wall clock time and date at job start Wed Apr 1 2020 03:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 N 1.46500 * 109.47204 * 120.00127 * 2 1 3 5 5 C 1.34775 * 120.00366 * 274.99782 * 4 2 1 6 6 O 1.21282 * 119.99750 * 0.02562 * 5 4 2 7 7 C 1.50699 * 120.00244 * 180.02562 * 5 4 2 8 8 H 1.09001 * 115.54755 * 325.72311 * 7 5 4 9 9 C 1.52994 * 117.49773 * 111.39345 * 7 5 4 10 10 C 1.52996 * 60.00204 * 107.48820 * 9 7 5 11 11 H 1.09004 * 117.49953 * 252.51297 * 10 9 7 12 12 C 1.52996 * 117.50068 * 107.48566 * 10 9 7 13 13 F 1.39904 * 109.47511 * 111.38144 * 12 10 9 14 14 F 1.39905 * 109.47532 * 231.38097 * 12 10 9 15 15 C 1.53006 * 109.47164 * 240.00051 * 2 1 3 16 16 C 1.53932 * 113.73220 * 156.72561 * 15 2 1 17 17 N 1.47963 * 86.17824 * 221.92173 * 16 15 2 18 18 C 1.46900 * 110.99920 * 137.58603 * 17 16 15 19 19 C 1.50701 * 109.47154 * 70.63875 * 18 17 16 20 20 O 1.21288 * 120.00267 * 0.02562 * 19 18 17 21 21 N 1.34783 * 119.99590 * 180.02562 * 19 18 17 22 22 C 1.37101 * 119.99374 * 180.02562 * 21 19 18 23 23 H 1.07998 * 120.00323 * 359.97438 * 22 21 19 24 24 C 1.38958 * 119.99538 * 180.02562 * 22 21 19 25 25 N 1.31408 * 119.99735 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 119.99683 * 179.97438 * 24 22 21 27 27 H 1.48508 * 109.47047 * 59.99864 * 26 24 22 28 28 H 1.48503 * 109.46927 * 179.97438 * 26 24 22 29 29 H 1.48500 * 109.47305 * 299.99908 * 26 24 22 30 30 C 1.47956 * 90.76518 * 24.69157 * 17 16 15 31 31 H 1.09001 * 109.47375 * 59.99983 * 1 2 3 32 32 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47230 * 299.99144 * 1 2 3 34 34 H 0.97001 * 119.99882 * 94.99976 * 4 2 1 35 35 H 1.09001 * 117.49822 * 214.97684 * 9 7 5 36 36 H 1.08999 * 117.50086 * 359.97438 * 9 7 5 37 37 H 1.08999 * 109.47478 * 351.38067 * 12 10 9 38 38 H 1.09001 * 112.93489 * 288.43691 * 15 2 1 39 39 H 1.08997 * 113.76329 * 336.24011 * 16 15 2 40 40 H 1.08998 * 113.75871 * 107.60749 * 16 15 2 41 41 H 1.09002 * 109.47579 * 190.64309 * 18 17 16 42 42 H 1.09003 * 109.46974 * 310.64232 * 18 17 16 43 43 H 0.96995 * 120.00187 * 0.02562 * 21 19 18 44 44 H 0.97002 * 119.99366 * 180.02562 * 25 24 22 45 45 H 1.09002 * 113.76134 * 220.99069 * 30 17 16 46 46 H 1.08998 * 113.86013 * 89.63623 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1471 -0.0184 2.3571 6 8 1.8583 1.1583 2.4118 7 6 2.6500 -0.7287 3.5874 8 1 2.3537 -1.7734 3.6812 9 6 4.0316 -0.3362 4.1146 10 6 2.7737 0.0893 4.8744 11 1 2.4913 1.1413 4.8313 12 6 2.4717 -0.6217 6.1951 13 9 2.6353 0.2756 7.2559 14 9 1.1541 -1.0918 6.1811 15 6 2.0400 -0.7213 -1.2493 16 6 3.4670 -0.3153 -1.6598 17 7 2.9604 -0.3146 -3.0501 18 6 3.4681 0.8454 -3.7947 19 6 4.9419 0.6691 -4.0554 20 8 5.5130 -0.3252 -3.6602 21 7 5.6253 1.6165 -4.7278 22 6 6.9660 1.4558 -4.9653 23 1 7.4745 0.5704 -4.6134 24 6 7.6707 2.4328 -5.6581 25 7 7.0520 3.5103 -6.0858 26 14 9.4975 2.2143 -5.9812 27 1 9.7150 0.9810 -6.7794 28 1 10.0109 3.3872 -6.7334 29 1 10.2188 2.1005 -4.6881 30 6 1.5822 -0.0739 -2.5688 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5137 0.8901 34 1 2.2490 -1.6318 1.1525 35 1 4.6441 -1.1226 4.5556 36 1 4.5770 0.4355 3.5713 37 1 3.1556 -1.4611 6.3205 38 1 1.8823 -1.7991 -1.2116 39 1 3.7640 0.6697 -1.3001 40 1 4.2152 -1.0838 -1.4655 41 1 2.9386 0.9281 -4.7439 42 1 3.3085 1.7511 -3.2095 43 1 5.1687 2.4119 -5.0435 44 1 7.5439 4.1921 -6.5697 45 1 0.8244 -0.6493 -3.1006 46 1 1.3261 0.9814 -2.4744 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485501517.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:39 Heat of formation + Delta-G solvation = -118.184548 kcal Electronic energy + Delta-G solvation = -29672.038193 eV Core-core repulsion = 25041.148495 eV Total energy + Delta-G solvation = -4630.889698 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.32482 -47.35571 -40.70615 -39.85393 -37.87601 -37.14708 -35.36263 -33.90554 -31.71311 -31.21323 -29.46721 -27.78564 -26.32680 -25.52449 -24.88056 -23.85124 -22.16512 -21.49270 -20.69040 -19.58177 -19.19543 -18.29184 -17.87670 -17.57395 -17.35448 -16.87441 -16.43674 -16.11594 -15.36185 -15.31024 -15.16689 -14.66640 -14.54237 -14.25987 -14.13913 -13.81928 -13.73712 -13.72311 -13.41790 -13.34277 -13.06441 -12.70627 -12.63995 -12.52290 -12.27086 -11.83644 -11.73582 -11.48807 -11.47617 -11.25905 -11.11496 -11.07249 -10.91253 -10.65962 -10.62732 -10.45353 -10.22648 -10.10092 -9.50747 -9.35956 -8.65975 -8.23874 -7.97622 -6.42680 -3.83619 2.10128 2.65013 3.05034 3.18811 3.24661 3.28817 3.35077 3.71527 3.87578 3.93191 3.96923 4.05821 4.19152 4.30741 4.38715 4.53877 4.57103 4.64724 4.73013 4.92142 5.02253 5.07002 5.16881 5.20191 5.23359 5.36757 5.39032 5.44906 5.51216 5.54452 5.67955 5.71389 5.75435 5.81635 5.95506 6.05216 6.17714 6.25051 6.33788 6.60975 7.18360 7.21958 7.53673 7.93597 8.04182 8.60154 9.16543 9.52896 10.04540 10.75006 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.013244 B = 0.001989 C = 0.001799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.703005 B =14077.482404 C =15558.407374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.150 3.850 3 H 0.089 0.911 4 N -0.715 5.715 5 C 0.544 3.456 6 O -0.536 6.536 7 C -0.169 4.169 8 H 0.132 0.868 9 C -0.126 4.126 10 C -0.193 4.193 11 H 0.141 0.859 12 C 0.297 3.703 13 F -0.200 7.200 14 F -0.202 7.202 15 C -0.128 4.128 16 C 0.029 3.971 17 N -0.453 5.453 18 C 0.010 3.990 19 C 0.444 3.556 20 O -0.580 6.580 21 N -0.564 5.564 22 C -0.300 4.300 23 H 0.102 0.898 24 C 0.022 3.978 25 N -0.902 5.902 26 Si 0.931 3.069 27 H -0.273 1.273 28 H -0.284 1.284 29 H -0.274 1.274 30 C 0.010 3.990 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.403 0.597 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.114 0.886 38 H 0.103 0.897 39 H 0.065 0.935 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.054 0.946 43 H 0.392 0.608 44 H 0.272 0.728 45 H 0.090 0.910 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.829 -8.727 19.750 25.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.045 3.955 3 H 0.107 0.893 4 N -0.366 5.366 5 C 0.330 3.670 6 O -0.413 6.413 7 C -0.190 4.190 8 H 0.150 0.850 9 C -0.163 4.163 10 C -0.212 4.212 11 H 0.158 0.842 12 C 0.243 3.757 13 F -0.181 7.181 14 F -0.183 7.183 15 C -0.148 4.148 16 C -0.100 4.100 17 N -0.176 5.176 18 C -0.122 4.122 19 C 0.229 3.771 20 O -0.464 6.464 21 N -0.201 5.201 22 C -0.429 4.429 23 H 0.120 0.880 24 C -0.180 4.180 25 N -0.543 5.543 26 Si 0.758 3.242 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.199 1.199 30 C -0.120 4.120 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.237 0.763 35 H 0.133 0.867 36 H 0.133 0.867 37 H 0.131 0.869 38 H 0.122 0.878 39 H 0.084 0.916 40 H 0.111 0.889 41 H 0.109 0.891 42 H 0.072 0.928 43 H 0.225 0.775 44 H 0.082 0.918 45 H 0.109 0.891 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.450 -8.897 19.488 24.778 hybrid contribution 0.456 0.866 -0.045 0.980 sum -11.994 -8.031 19.443 24.215 Atomic orbital electron populations 1.22144 0.94901 1.02275 1.02657 1.21094 0.94185 0.97272 0.82912 0.89301 1.45935 1.67078 1.14228 1.09329 1.19428 0.77283 0.86675 0.83615 1.90730 1.49882 1.15869 1.84833 1.22222 1.03135 1.00780 0.92880 0.84993 1.23164 0.88987 1.03630 1.00549 1.23360 1.05101 1.02586 0.90163 0.84164 1.21302 0.81091 0.89418 0.83896 1.93008 1.95448 1.70710 1.58907 1.93012 1.39581 1.88950 1.96787 1.23380 0.97487 1.01064 0.92852 1.23806 0.95618 1.01674 0.88922 1.68405 1.01884 1.35704 1.11562 1.22463 0.96682 0.92800 1.00267 1.19681 0.87625 0.85415 0.84398 1.90509 1.70081 1.30313 1.55540 1.41871 1.09549 1.19497 1.49163 1.19640 0.83940 1.06060 1.33276 0.88011 1.25270 1.00582 0.95196 0.96923 1.69605 1.37300 1.09045 1.38338 0.85916 0.81996 0.77675 0.78611 1.19878 1.20957 1.19927 1.23969 0.94168 0.99982 0.93891 0.91252 0.92291 0.92196 0.76298 0.86689 0.86669 0.86886 0.87835 0.91629 0.88853 0.89136 0.92838 0.77489 0.91804 0.89139 0.91183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.40 9.29 37.16 0.35 -1.06 16 2 C 0.15 1.47 2.41 -67.93 -0.16 1.30 16 3 H 0.09 1.09 7.37 -51.93 -0.38 0.70 16 4 N -0.72 -6.12 5.08 -53.80 -0.27 -6.39 16 5 C 0.54 5.58 7.58 -10.99 -0.08 5.49 16 6 O -0.54 -7.71 15.92 5.56 0.09 -7.62 16 7 C -0.17 -1.16 5.87 -91.78 -0.54 -1.70 16 8 H 0.13 0.57 8.14 -51.93 -0.42 0.15 16 9 C -0.13 -0.72 9.88 -26.74 -0.26 -0.98 16 10 C -0.19 -1.42 5.41 -90.62 -0.49 -1.91 16 11 H 0.14 1.34 7.67 -51.93 -0.40 0.94 16 12 C 0.30 1.93 5.50 37.16 0.20 2.14 16 13 F -0.20 -1.75 17.34 2.25 0.04 -1.71 16 14 F -0.20 -1.77 17.29 2.25 0.04 -1.73 16 15 C -0.13 -1.33 3.49 -89.68 -0.31 -1.64 16 16 C 0.03 0.42 6.31 -2.77 -0.02 0.40 16 17 N -0.45 -7.28 5.95 -239.75 -1.43 -8.71 16 18 C 0.01 0.18 5.31 -4.98 -0.03 0.15 16 19 C 0.44 10.52 7.59 -10.98 -0.08 10.43 16 20 O -0.58 -15.66 15.13 5.55 0.08 -15.58 16 21 N -0.56 -14.39 5.29 -10.96 -0.06 -14.45 16 22 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 23 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 24 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 25 N -0.90 -24.61 13.05 55.50 0.72 -23.88 16 26 Si 0.93 21.07 29.55 -169.99 -5.02 16.05 16 27 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 28 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 29 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 30 C 0.01 0.11 6.59 -2.77 -0.02 0.09 16 31 H 0.07 0.55 7.43 -51.93 -0.39 0.17 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.40 2.41 8.60 -40.82 -0.35 2.06 16 35 H 0.11 0.34 8.05 -51.93 -0.42 -0.08 16 36 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.11 0.33 7.90 -51.93 -0.41 -0.08 16 38 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.07 1.02 7.60 -51.93 -0.39 0.63 16 40 H 0.09 1.52 8.09 -51.93 -0.42 1.10 16 41 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 42 H 0.05 0.87 7.69 -51.93 -0.40 0.47 16 43 H 0.39 9.57 7.90 -40.82 -0.32 9.25 16 44 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 45 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 46 H 0.07 0.74 7.72 -51.93 -0.40 0.34 16 LS Contribution 394.80 15.07 5.95 5.95 Total: -1.00 -34.84 394.80 -8.30 -43.14 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -6.75 Total: 10.23 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: -1.69 Total: 4.69 kcal Atomic # 7 Polarization: -52.39 SS G_CDS: -1.03 Total: -53.43 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: 0.17 Total: -23.19 kcal Atomic # 9 Polarization: -3.52 SS G_CDS: 0.08 Total: -3.44 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.84 -8.30 -43.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485501517.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.044 kcal (2) G-P(sol) polarization free energy of solvation -34.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds