Wall clock time and date at job start Wed Apr 1 2020 04:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47014 * 2 1 4 4 C 1.34778 * 119.99930 * 83.96427 * 3 2 1 5 5 O 1.21286 * 119.99643 * 180.02562 * 4 3 2 6 6 C 1.50693 * 119.99829 * 359.97438 * 4 3 2 7 7 H 1.08996 * 115.55611 * 325.67148 * 6 4 3 8 8 C 1.53004 * 117.49978 * 111.38319 * 6 4 3 9 9 C 1.53001 * 60.00128 * 107.48798 * 8 6 4 10 10 F 1.39902 * 117.49820 * 252.51230 * 9 8 6 11 11 F 1.39898 * 117.49550 * 107.49106 * 9 8 6 12 12 C 1.46504 * 120.00187 * 263.95924 * 3 2 1 13 13 H 1.09002 * 110.27657 * 187.53524 * 12 3 2 14 14 C 1.54591 * 110.30968 * 309.73825 * 12 3 2 15 15 C 1.54939 * 102.92258 * 140.87339 * 14 12 3 16 16 N 1.48814 * 103.34821 * 322.68757 * 15 14 12 17 17 C 1.46895 * 111.18824 * 159.50867 * 16 15 14 18 18 C 1.50703 * 109.46897 * 52.65940 * 17 16 15 19 19 O 1.21284 * 120.00003 * 0.02562 * 18 17 16 20 20 N 1.34781 * 119.99592 * 179.97438 * 18 17 16 21 21 C 1.37097 * 119.99678 * 180.02562 * 20 18 17 22 22 H 1.08000 * 120.00224 * 0.02562 * 21 20 18 23 23 C 1.38950 * 120.00006 * 180.02562 * 21 20 18 24 24 N 1.31410 * 120.00217 * 179.97438 * 23 21 20 25 25 Si 1.86805 * 119.99765 * 0.02562 * 23 21 20 26 26 H 1.48505 * 109.47205 * 89.99865 * 25 23 21 27 27 H 1.48503 * 109.46995 * 209.99616 * 25 23 21 28 28 H 1.48499 * 109.47246 * 329.99703 * 25 23 21 29 29 C 1.47903 * 105.67889 * 38.97636 * 16 15 14 30 30 H 1.09006 * 109.46854 * 188.01102 * 1 2 3 31 31 H 1.08994 * 109.47100 * 308.00879 * 1 2 3 32 32 H 1.09000 * 109.47502 * 68.01474 * 1 2 3 33 33 H 1.09008 * 109.47060 * 240.00282 * 2 1 3 34 34 H 1.08995 * 109.47360 * 120.00321 * 2 1 3 35 35 H 1.09000 * 117.49810 * 214.98440 * 8 6 4 36 36 H 1.08997 * 117.49520 * 359.97438 * 8 6 4 37 37 H 1.08999 * 110.72069 * 259.22522 * 14 12 3 38 38 H 1.09001 * 110.72738 * 22.33466 * 14 12 3 39 39 H 1.08998 * 110.67040 * 81.01496 * 15 14 12 40 40 H 1.08999 * 110.66631 * 203.98654 * 15 14 12 41 41 H 1.08995 * 109.47424 * 172.66674 * 17 16 15 42 42 H 1.08996 * 109.46565 * 292.66406 * 17 16 15 43 43 H 0.96999 * 120.00212 * 0.02562 * 20 18 17 44 44 H 0.97000 * 119.99932 * 180.02562 * 24 23 21 45 45 H 1.09001 * 109.91616 * 215.45763 * 29 16 15 46 46 H 1.08992 * 109.91676 * 94.35624 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1272 2.0574 1.1607 5 8 2.5310 3.2011 1.1606 6 6 1.7461 1.3929 2.4585 7 1 0.9130 0.6924 2.4011 8 6 2.8705 1.0747 3.4461 9 6 1.8921 2.2133 3.7417 10 9 2.3692 3.5228 3.6205 11 9 0.9465 2.0063 4.7518 12 6 2.3883 2.0274 -1.2617 13 1 2.8518 2.9949 -1.0689 14 6 3.3476 1.1215 -2.0673 15 6 2.8627 1.3142 -3.5262 16 7 1.3841 1.4092 -3.3872 17 6 0.7818 2.0631 -4.5565 18 6 1.2453 1.3717 -5.8128 19 8 2.0024 0.4270 -5.7411 20 7 0.8175 1.8027 -7.0161 21 6 1.2387 1.1735 -8.1590 22 1 1.9129 0.3322 -8.0951 23 6 0.7982 1.6181 -9.3995 24 7 1.2023 1.0153 -10.4951 25 14 -0.3674 3.0737 -9.5101 26 1 0.4178 4.3297 -9.6159 27 1 -1.2304 2.9268 -10.7097 28 1 -1.2163 3.1217 -8.2925 29 6 1.1481 2.1981 -2.1586 30 1 -0.3633 -1.0177 0.1432 31 1 -0.3633 0.6328 0.8097 32 1 -0.3634 0.3847 -0.9529 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 2.7774 0.1645 4.0384 36 1 3.8859 1.3456 3.1569 37 1 4.3788 1.4566 -1.9562 38 1 3.2461 0.0811 -1.7585 39 1 3.2667 2.2347 -3.9475 40 1 3.1402 0.4574 -4.1402 41 1 -0.3043 2.0021 -4.4877 42 1 1.0859 3.1094 -4.5843 43 1 0.2117 2.5581 -7.0735 44 1 0.8950 1.3259 -11.3611 45 1 0.2628 1.8261 -1.6428 46 1 1.0154 3.2497 -2.4123 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567937671.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:53 Heat of formation + Delta-G solvation = -104.112121 kcal Electronic energy + Delta-G solvation = -30900.200398 eV Core-core repulsion = 26269.920926 eV Total energy + Delta-G solvation = -4630.279472 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.03175 -47.67077 -40.77690 -39.19322 -37.85160 -36.04191 -35.81972 -34.00278 -32.03596 -31.63880 -30.36904 -28.64269 -26.97147 -25.15559 -23.97575 -23.58680 -23.00592 -21.15026 -20.95760 -19.49135 -19.33523 -18.64956 -18.29552 -17.38920 -17.15738 -16.43653 -16.12535 -15.83856 -15.61864 -15.39619 -14.90381 -14.76947 -14.43111 -14.31060 -14.20262 -13.96172 -13.91196 -13.68092 -13.52581 -13.30064 -13.10937 -12.91108 -12.64063 -12.51753 -12.34109 -12.06955 -12.02004 -11.77239 -11.67190 -11.49940 -11.24409 -11.15091 -11.01548 -10.66183 -10.60494 -10.52381 -10.10435 -10.01623 -9.59468 -9.01776 -8.52440 -8.24604 -8.08556 -6.35411 -3.86982 1.84453 2.34145 2.58216 2.88705 2.99950 3.04141 3.12715 3.67411 3.70100 3.71366 3.99885 4.07073 4.12575 4.25645 4.49694 4.62601 4.69178 4.76841 4.83078 4.96797 4.97923 5.02807 5.15206 5.19537 5.21697 5.27554 5.32789 5.48731 5.51650 5.58238 5.65256 5.72540 5.78329 5.87897 5.91707 6.04796 6.13862 6.32392 6.52787 6.98795 7.07053 7.12726 7.53455 7.76608 8.09844 8.54808 8.90375 9.37563 9.77174 10.77446 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.028100 B = 0.002059 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.191262 B =13598.162989 C =13775.377660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.098 3.902 3 N -0.592 5.592 4 C 0.542 3.458 5 O -0.523 6.523 6 C -0.196 4.196 7 H 0.151 0.849 8 C -0.147 4.147 9 C 0.228 3.772 10 F -0.138 7.138 11 F -0.157 7.157 12 C 0.131 3.869 13 H 0.106 0.894 14 C -0.136 4.136 15 C 0.038 3.962 16 N -0.491 5.491 17 C 0.033 3.967 18 C 0.451 3.549 19 O -0.563 6.563 20 N -0.588 5.588 21 C -0.305 4.305 22 H 0.120 0.880 23 C 0.042 3.958 24 N -0.880 5.880 25 Si 0.879 3.121 26 H -0.271 1.271 27 H -0.276 1.276 28 H -0.269 1.269 29 C 0.017 3.983 30 H 0.069 0.931 31 H 0.052 0.948 32 H 0.074 0.926 33 H 0.099 0.901 34 H 0.075 0.925 35 H 0.134 0.866 36 H 0.128 0.872 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.040 0.960 40 H 0.122 0.878 41 H 0.091 0.909 42 H 0.051 0.949 43 H 0.371 0.629 44 H 0.274 0.726 45 H 0.088 0.912 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.368 0.027 27.406 27.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.024 4.024 3 N -0.324 5.324 4 C 0.329 3.671 5 O -0.399 6.399 6 C -0.218 4.218 7 H 0.168 0.832 8 C -0.186 4.186 9 C 0.191 3.809 10 F -0.118 7.118 11 F -0.137 7.137 12 C 0.028 3.972 13 H 0.124 0.876 14 C -0.175 4.175 15 C -0.089 4.089 16 N -0.216 5.216 17 C -0.099 4.099 18 C 0.237 3.763 19 O -0.446 6.446 20 N -0.227 5.227 21 C -0.434 4.434 22 H 0.138 0.862 23 C -0.161 4.161 24 N -0.519 5.519 25 Si 0.705 3.295 26 H -0.196 1.196 27 H -0.201 1.201 28 H -0.195 1.195 29 C -0.112 4.112 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.092 0.908 33 H 0.117 0.883 34 H 0.094 0.906 35 H 0.152 0.848 36 H 0.147 0.853 37 H 0.093 0.907 38 H 0.101 0.899 39 H 0.058 0.942 40 H 0.140 0.860 41 H 0.109 0.891 42 H 0.069 0.931 43 H 0.203 0.797 44 H 0.084 0.916 45 H 0.106 0.894 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 0.100 -0.486 27.241 27.246 hybrid contribution -1.005 2.110 -0.350 2.363 sum -0.905 1.624 26.891 26.955 Atomic orbital electron populations 1.22386 0.95455 1.02530 1.03171 1.21697 0.94853 0.81928 1.03972 1.47908 1.64380 1.14346 1.05763 1.19226 0.78108 0.85887 0.83907 1.90793 1.45491 1.17072 1.86513 1.23758 1.04328 1.03244 0.90494 0.83180 1.24283 0.96900 0.98861 0.98514 1.19478 0.92610 0.80141 0.88675 1.93136 1.87330 1.35696 1.95662 1.93054 1.65236 1.94574 1.60827 1.22049 0.95139 0.97761 0.82265 0.87648 1.23000 0.98440 1.00433 0.95599 1.23520 0.86694 1.03512 0.95170 1.64686 1.11306 1.45061 1.00550 1.22142 1.00766 0.96160 0.90808 1.19581 0.85741 0.87124 0.83836 1.90473 1.38311 1.29815 1.85983 1.42206 1.43639 1.30715 1.06135 1.19418 1.27408 1.14811 0.81737 0.86216 1.25046 0.97921 0.98058 0.95105 1.69617 1.44025 1.40484 0.97815 0.86682 0.81246 0.83000 0.78532 1.19637 1.20119 1.19459 1.23470 0.98625 0.96911 0.92190 0.91182 0.92863 0.90764 0.88305 0.90627 0.84801 0.85333 0.90708 0.89914 0.94210 0.86010 0.89090 0.93137 0.79663 0.91565 0.89379 0.93283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.23 9.39 37.16 0.35 -0.88 16 2 C 0.10 0.70 5.25 -4.04 -0.02 0.68 16 3 N -0.59 -5.63 2.40 -164.56 -0.40 -6.03 16 4 C 0.54 5.75 7.40 -10.99 -0.08 5.67 16 5 O -0.52 -7.59 14.52 5.55 0.08 -7.51 16 6 C -0.20 -1.44 4.70 -91.77 -0.43 -1.87 16 7 H 0.15 0.75 6.09 -51.93 -0.32 0.44 16 8 C -0.15 -0.79 10.20 -26.73 -0.27 -1.06 16 9 C 0.23 2.02 5.19 -26.73 -0.14 1.88 16 10 F -0.14 -1.69 15.71 2.25 0.04 -1.65 16 11 F -0.16 -1.41 17.60 2.25 0.04 -1.37 16 12 C 0.13 1.48 3.38 -66.57 -0.23 1.26 16 13 H 0.11 1.33 7.00 -51.93 -0.36 0.96 16 14 C -0.14 -1.56 6.55 -24.87 -0.16 -1.72 16 15 C 0.04 0.58 5.31 -1.74 -0.01 0.57 16 16 N -0.49 -7.31 5.26 -231.65 -1.22 -8.53 16 17 C 0.03 0.54 5.52 -4.98 -0.03 0.51 16 18 C 0.45 9.82 7.50 -10.98 -0.08 9.73 16 19 O -0.56 -14.08 13.12 5.55 0.07 -14.01 16 20 N -0.59 -13.65 5.09 -10.96 -0.06 -13.70 16 21 C -0.31 -8.43 10.16 -14.93 -0.15 -8.58 16 22 H 0.12 3.77 7.39 -52.49 -0.39 3.38 16 23 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 24 N -0.88 -25.32 13.96 55.50 0.77 -24.54 16 25 Si 0.88 19.11 27.74 -169.99 -4.71 14.40 16 26 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 27 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 28 H -0.27 -5.34 6.52 56.52 0.37 -4.97 16 29 C 0.02 0.21 6.24 -2.75 -0.02 0.19 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.35 6.94 -51.93 -0.36 -0.01 16 32 H 0.07 0.65 5.99 -51.93 -0.31 0.34 16 33 H 0.10 0.81 5.92 -51.92 -0.31 0.50 16 34 H 0.08 0.37 6.99 -51.93 -0.36 0.00 16 35 H 0.13 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.13 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.08 0.88 5.81 -51.93 -0.30 0.58 16 39 H 0.04 0.62 8.02 -51.93 -0.42 0.20 16 40 H 0.12 2.23 6.01 -51.93 -0.31 1.92 16 41 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 42 H 0.05 0.74 7.81 -51.93 -0.41 0.34 16 43 H 0.37 7.61 5.76 -40.82 -0.24 7.37 16 44 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 45 H 0.09 1.00 5.04 -51.93 -0.26 0.74 16 46 H 0.05 0.59 7.56 -51.93 -0.39 0.20 16 LS Contribution 369.78 15.07 5.57 5.57 Total: -1.00 -33.46 369.78 -7.20 -40.65 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -6.02 Total: 9.31 kcal Atomic # 6 Polarization: 8.79 SS G_CDS: -1.37 Total: 7.42 kcal Atomic # 7 Polarization: -51.91 SS G_CDS: -0.90 Total: -52.81 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: 0.15 Total: -21.52 kcal Atomic # 9 Polarization: -3.10 SS G_CDS: 0.08 Total: -3.02 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -4.71 Total: 14.40 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.46 -7.20 -40.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567937671.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.460 kcal (2) G-P(sol) polarization free energy of solvation -33.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds