Wall clock time and date at job start Wed Apr 1 2020 04:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47014 * 2 1 4 4 C 1.34778 * 119.99930 * 83.96427 * 3 2 1 5 5 O 1.21286 * 119.99643 * 180.02562 * 4 3 2 6 6 C 1.50693 * 119.99829 * 359.97438 * 4 3 2 7 7 H 1.08996 * 115.55611 * 325.67148 * 6 4 3 8 8 C 1.53004 * 117.49978 * 111.38319 * 6 4 3 9 9 C 1.53001 * 60.00128 * 107.48798 * 8 6 4 10 10 F 1.39902 * 117.49820 * 252.51230 * 9 8 6 11 11 F 1.39898 * 117.49550 * 107.49106 * 9 8 6 12 12 C 1.46504 * 120.00187 * 263.95924 * 3 2 1 13 13 H 1.09002 * 110.27657 * 187.53524 * 12 3 2 14 14 C 1.54591 * 110.30968 * 309.73825 * 12 3 2 15 15 C 1.54939 * 102.92258 * 140.87339 * 14 12 3 16 16 N 1.48814 * 103.34821 * 322.68757 * 15 14 12 17 17 C 1.46895 * 111.18824 * 159.50867 * 16 15 14 18 18 C 1.50703 * 109.46897 * 52.65940 * 17 16 15 19 19 O 1.21284 * 120.00003 * 0.02562 * 18 17 16 20 20 N 1.34781 * 119.99592 * 179.97438 * 18 17 16 21 21 C 1.37097 * 119.99678 * 180.02562 * 20 18 17 22 22 H 1.08000 * 120.00224 * 0.02562 * 21 20 18 23 23 C 1.38950 * 120.00006 * 180.02562 * 21 20 18 24 24 N 1.31410 * 120.00217 * 179.97438 * 23 21 20 25 25 Si 1.86805 * 119.99765 * 0.02562 * 23 21 20 26 26 H 1.48505 * 109.47205 * 89.99865 * 25 23 21 27 27 H 1.48503 * 109.46995 * 209.99616 * 25 23 21 28 28 H 1.48499 * 109.47246 * 329.99703 * 25 23 21 29 29 C 1.47903 * 105.67889 * 38.97636 * 16 15 14 30 30 H 1.09006 * 109.46854 * 188.01102 * 1 2 3 31 31 H 1.08994 * 109.47100 * 308.00879 * 1 2 3 32 32 H 1.09000 * 109.47502 * 68.01474 * 1 2 3 33 33 H 1.09008 * 109.47060 * 240.00282 * 2 1 3 34 34 H 1.08995 * 109.47360 * 120.00321 * 2 1 3 35 35 H 1.09000 * 117.49810 * 214.98440 * 8 6 4 36 36 H 1.08997 * 117.49520 * 359.97438 * 8 6 4 37 37 H 1.08999 * 110.72069 * 259.22522 * 14 12 3 38 38 H 1.09001 * 110.72738 * 22.33466 * 14 12 3 39 39 H 1.08998 * 110.67040 * 81.01496 * 15 14 12 40 40 H 1.08999 * 110.66631 * 203.98654 * 15 14 12 41 41 H 1.08995 * 109.47424 * 172.66674 * 17 16 15 42 42 H 1.08996 * 109.46565 * 292.66406 * 17 16 15 43 43 H 0.96999 * 120.00212 * 0.02562 * 20 18 17 44 44 H 0.97000 * 119.99932 * 180.02562 * 24 23 21 45 45 H 1.09001 * 109.91616 * 215.45763 * 29 16 15 46 46 H 1.08992 * 109.91676 * 94.35624 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1272 2.0574 1.1607 5 8 2.5310 3.2011 1.1606 6 6 1.7461 1.3929 2.4585 7 1 0.9130 0.6924 2.4011 8 6 2.8705 1.0747 3.4461 9 6 1.8921 2.2133 3.7417 10 9 2.3692 3.5228 3.6205 11 9 0.9465 2.0063 4.7518 12 6 2.3883 2.0274 -1.2617 13 1 2.8518 2.9949 -1.0689 14 6 3.3476 1.1215 -2.0673 15 6 2.8627 1.3142 -3.5262 16 7 1.3841 1.4092 -3.3872 17 6 0.7818 2.0631 -4.5565 18 6 1.2453 1.3717 -5.8128 19 8 2.0024 0.4270 -5.7411 20 7 0.8175 1.8027 -7.0161 21 6 1.2387 1.1735 -8.1590 22 1 1.9129 0.3322 -8.0951 23 6 0.7982 1.6181 -9.3995 24 7 1.2023 1.0153 -10.4951 25 14 -0.3674 3.0737 -9.5101 26 1 0.4178 4.3297 -9.6159 27 1 -1.2304 2.9268 -10.7097 28 1 -1.2163 3.1217 -8.2925 29 6 1.1481 2.1981 -2.1586 30 1 -0.3633 -1.0177 0.1432 31 1 -0.3633 0.6328 0.8097 32 1 -0.3634 0.3847 -0.9529 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 2.7774 0.1645 4.0384 36 1 3.8859 1.3456 3.1569 37 1 4.3788 1.4566 -1.9562 38 1 3.2461 0.0811 -1.7585 39 1 3.2667 2.2347 -3.9475 40 1 3.1402 0.4574 -4.1402 41 1 -0.3043 2.0021 -4.4877 42 1 1.0859 3.1094 -4.5843 43 1 0.2117 2.5581 -7.0735 44 1 0.8950 1.3259 -11.3611 45 1 0.2628 1.8261 -1.6428 46 1 1.0154 3.2497 -2.4123 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567937671.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:52 Heat of formation + Delta-G solvation = -129.056710 kcal Electronic energy + Delta-G solvation = -30901.282076 eV Core-core repulsion = 26269.920926 eV Total energy + Delta-G solvation = -4631.361150 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -49.69258 -48.37343 -41.64576 -40.59990 -39.18258 -36.79027 -36.68318 -35.90616 -33.79866 -32.92810 -31.17682 -29.68763 -28.40090 -26.23589 -25.37399 -24.24208 -23.56822 -22.36281 -21.80204 -21.30215 -20.22563 -20.08618 -19.31166 -18.16312 -17.93903 -17.62321 -17.15199 -16.95214 -16.73324 -16.46693 -16.26677 -16.12852 -15.54951 -15.13713 -15.02637 -14.92121 -14.78409 -14.74713 -14.61848 -14.44418 -14.32265 -13.95687 -13.80245 -13.53947 -13.43988 -13.27325 -13.08282 -12.90623 -12.63503 -12.49704 -12.41907 -12.29710 -12.26713 -11.99004 -11.75657 -11.60128 -11.46701 -11.17596 -10.89387 -10.31449 -10.23229 -9.75886 -9.37346 -8.41742 -6.02030 1.13883 1.29547 1.33998 1.43022 1.64441 1.93354 2.02126 2.21757 2.24498 2.64935 3.09365 3.14308 3.18447 3.19812 3.52910 3.61598 3.65828 3.78846 4.03697 4.08813 4.14918 4.27439 4.33445 4.36614 4.38670 4.45900 4.51498 4.57052 4.60975 4.68126 4.70694 4.77026 4.88709 4.99175 5.06161 5.12503 5.23780 5.46729 5.52096 5.54139 5.83247 5.88376 6.01805 6.29834 6.58425 6.87985 6.98931 7.38579 7.94790 8.75523 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.028100 B = 0.002059 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.191262 B =13598.162989 C =13775.377660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.094 3.906 3 N -0.586 5.586 4 C 0.538 3.462 5 O -0.569 6.569 6 C -0.191 4.191 7 H 0.179 0.821 8 C -0.113 4.113 9 C 0.194 3.806 10 F -0.167 7.167 11 F -0.161 7.161 12 C 0.137 3.863 13 H 0.092 0.908 14 C -0.122 4.122 15 C 0.039 3.961 16 N -0.500 5.500 17 C 0.042 3.958 18 C 0.452 3.548 19 O -0.601 6.601 20 N -0.592 5.592 21 C -0.324 4.324 22 H 0.059 0.941 23 C -0.015 4.015 24 N -0.933 5.933 25 Si 0.961 3.039 26 H -0.260 1.260 27 H -0.275 1.275 28 H -0.232 1.232 29 C 0.022 3.978 30 H 0.086 0.914 31 H 0.059 0.941 32 H 0.053 0.947 33 H 0.089 0.911 34 H 0.109 0.891 35 H 0.173 0.827 36 H 0.129 0.871 37 H 0.083 0.917 38 H 0.093 0.907 39 H 0.029 0.971 40 H 0.084 0.916 41 H 0.119 0.881 42 H 0.075 0.925 43 H 0.388 0.612 44 H 0.279 0.721 45 H 0.100 0.900 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.214 0.594 30.079 30.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.027 4.027 3 N -0.317 5.317 4 C 0.327 3.673 5 O -0.448 6.448 6 C -0.212 4.212 7 H 0.196 0.804 8 C -0.150 4.150 9 C 0.157 3.843 10 F -0.147 7.147 11 F -0.141 7.141 12 C 0.033 3.967 13 H 0.111 0.889 14 C -0.161 4.161 15 C -0.089 4.089 16 N -0.225 5.225 17 C -0.089 4.089 18 C 0.240 3.760 19 O -0.485 6.485 20 N -0.233 5.233 21 C -0.453 4.453 22 H 0.077 0.923 23 C -0.213 4.213 24 N -0.574 5.574 25 Si 0.782 3.218 26 H -0.184 1.184 27 H -0.200 1.200 28 H -0.155 1.155 29 C -0.106 4.106 30 H 0.105 0.895 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.107 0.893 34 H 0.127 0.873 35 H 0.191 0.809 36 H 0.147 0.853 37 H 0.102 0.898 38 H 0.112 0.888 39 H 0.048 0.952 40 H 0.102 0.898 41 H 0.137 0.863 42 H 0.093 0.907 43 H 0.224 0.776 44 H 0.088 0.912 45 H 0.118 0.882 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.759 0.053 29.949 30.001 hybrid contribution -0.339 1.808 -1.137 2.163 sum -2.098 1.861 28.812 28.948 Atomic orbital electron populations 1.22349 0.94989 1.03620 1.02257 1.21919 0.95188 0.80480 1.05143 1.47942 1.63811 1.15137 1.04850 1.19758 0.77185 0.85407 0.84983 1.90780 1.47613 1.19205 1.87211 1.23801 1.06321 1.02922 0.88205 0.80358 1.24492 0.95899 0.98263 0.96377 1.19981 0.94696 0.79907 0.89724 1.93069 1.87780 1.37976 1.95881 1.93037 1.65617 1.94466 1.61007 1.21817 0.94591 0.97282 0.83054 0.88945 1.22884 0.98886 1.01289 0.93010 1.23318 0.87347 1.01308 0.96942 1.64674 1.10852 1.45946 1.01027 1.22108 1.02247 0.96485 0.88074 1.20716 0.83972 0.86249 0.85084 1.90486 1.39548 1.31562 1.86875 1.42047 1.44586 1.31376 1.05323 1.18990 1.27771 1.14371 0.84204 0.92292 1.26072 0.99764 1.01673 0.93838 1.69795 1.45908 1.42913 0.98749 0.85412 0.78625 0.77868 0.79932 1.18415 1.20030 1.15548 1.23483 0.99408 0.96806 0.90898 0.89496 0.92182 0.92822 0.89274 0.87322 0.80898 0.85255 0.89846 0.88818 0.95245 0.89788 0.86298 0.90700 0.77642 0.91182 0.88160 0.92789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.84 9.39 71.98 0.68 -1.16 16 2 C 0.09 1.04 5.25 86.38 0.45 1.49 16 3 N -0.59 -9.81 2.40 -792.95 -1.91 -11.72 16 4 C 0.54 10.36 7.40 87.65 0.65 11.00 16 5 O -0.57 -16.22 14.52 -3.05 -0.04 -16.27 16 6 C -0.19 -2.20 4.70 -11.54 -0.05 -2.25 16 7 H 0.18 0.98 6.09 -2.39 -0.01 0.96 16 8 C -0.11 -0.79 10.20 30.60 0.31 -0.48 16 9 C 0.19 3.07 5.19 30.60 0.16 3.23 16 10 F -0.17 -4.07 15.71 44.97 0.71 -3.36 16 11 F -0.16 -2.61 17.60 44.97 0.79 -1.82 16 12 C 0.14 2.89 3.38 45.87 0.16 3.05 16 13 H 0.09 2.26 7.00 -2.39 -0.02 2.24 16 14 C -0.12 -2.69 6.55 31.80 0.21 -2.48 16 15 C 0.04 1.18 5.31 86.59 0.46 1.64 16 16 N -0.50 -14.28 5.26 -886.80 -4.67 -18.94 16 17 C 0.04 1.29 5.52 85.56 0.47 1.76 16 18 C 0.45 19.77 7.50 87.66 0.66 20.43 16 19 O -0.60 -31.37 13.12 -3.04 -0.04 -31.41 16 20 N -0.59 -27.43 5.09 -306.98 -1.56 -28.99 16 21 C -0.32 -18.65 10.16 84.04 0.85 -17.80 16 22 H 0.06 4.02 7.39 -2.91 -0.02 4.00 16 23 C -0.01 -0.81 5.50 84.93 0.47 -0.34 16 24 N -0.93 -55.75 13.96 21.66 0.30 -55.44 16 25 Si 0.96 38.61 27.74 68.60 1.90 40.51 16 26 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 27 H -0.28 -11.00 7.11 99.48 0.71 -10.29 16 28 H -0.23 -7.87 6.52 99.48 0.65 -7.22 16 29 C 0.02 0.50 6.24 86.45 0.54 1.04 16 30 H 0.09 0.65 8.14 -2.38 -0.02 0.63 16 31 H 0.06 0.56 6.94 -2.39 -0.02 0.55 16 32 H 0.05 0.81 5.99 -2.39 -0.01 0.79 16 33 H 0.09 1.22 5.92 -2.38 -0.01 1.21 16 34 H 0.11 0.53 6.99 -2.39 -0.02 0.51 16 35 H 0.17 -0.11 8.14 -2.39 -0.02 -0.13 16 36 H 0.13 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.09 1.86 5.81 -2.39 -0.01 1.85 16 39 H 0.03 0.93 8.02 -2.39 -0.02 0.91 16 40 H 0.08 3.24 6.01 -2.39 -0.01 3.22 16 41 H 0.12 3.03 8.14 -2.39 -0.02 3.01 16 42 H 0.08 1.97 7.81 -2.39 -0.02 1.96 16 43 H 0.39 15.04 5.76 -92.71 -0.53 14.51 16 44 H 0.28 15.25 8.31 -92.71 -0.77 14.48 16 45 H 0.10 2.02 5.04 -2.39 -0.01 2.01 16 46 H 0.05 1.17 7.56 -2.39 -0.02 1.15 16 Total: -1.00 -80.54 369.78 1.94 -78.60 By element: Atomic # 1 Polarization: 29.27 SS G_CDS: 0.45 Total: 29.72 kcal Atomic # 6 Polarization: 13.12 SS G_CDS: 6.01 Total: 19.13 kcal Atomic # 7 Polarization: -107.27 SS G_CDS: -7.83 Total: -115.10 kcal Atomic # 8 Polarization: -47.60 SS G_CDS: -0.08 Total: -47.68 kcal Atomic # 9 Polarization: -6.68 SS G_CDS: 1.50 Total: -5.18 kcal Atomic # 14 Polarization: 38.61 SS G_CDS: 1.90 Total: 40.51 kcal Total: -80.54 1.94 -78.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567937671.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.459 kcal (2) G-P(sol) polarization free energy of solvation -80.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds