Wall clock time and date at job start Wed Apr 1 2020 03:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 110.91226 * 2 1 4 4 C 1.54912 * 111.00212 * 236.10116 * 2 1 3 5 5 N 1.47425 * 104.82960 * 204.91835 * 4 2 1 6 6 C 1.34772 * 125.64858 * 204.09715 * 5 4 2 7 7 O 1.21621 * 120.00522 * 174.46598 * 6 5 4 8 8 C 1.47318 * 119.99838 * 354.46407 * 6 5 4 9 9 C 1.37826 * 126.52543 * 172.58495 * 8 6 5 10 10 N 1.34786 * 108.24786 * 179.86578 * 9 8 6 11 11 H 0.97003 * 125.36167 * 180.14878 * 10 9 8 12 12 C 1.37305 * 109.26885 * 0.40630 * 10 9 8 13 13 C 1.48008 * 125.76075 * 179.72688 * 12 10 9 14 14 N 1.34174 * 126.69611 * 180.02562 * 13 12 10 15 15 N 1.28989 * 107.25038 * 179.97438 * 14 13 12 16 16 N 1.28716 * 108.98921 * 359.97438 * 15 14 13 17 17 H 0.96996 * 125.32615 * 179.97438 * 16 15 14 18 18 N 1.28877 * 109.35459 * 359.76799 * 16 15 14 19 19 C 1.35694 * 108.47912 * 359.74839 * 12 10 9 20 20 C 1.47023 * 108.70575 * 24.12146 * 5 4 2 21 21 C 1.54325 * 107.27147 * 358.94657 * 20 5 4 22 22 H 1.09004 * 110.71797 * 96.34290 * 21 20 5 23 23 C 1.52997 * 110.71934 * 219.43838 * 21 20 5 24 24 N 1.46496 * 109.47209 * 293.54402 * 23 21 20 25 25 C 1.36939 * 119.99822 * 179.72720 * 24 23 21 26 26 H 1.08003 * 120.00152 * 0.27232 * 25 24 23 27 27 C 1.38808 * 120.00090 * 180.28013 * 25 24 23 28 28 N 1.31620 * 120.00278 * 179.97438 * 27 25 24 29 29 Si 1.86801 * 119.99866 * 359.97438 * 27 25 24 30 30 H 1.48496 * 109.47131 * 90.00212 * 29 27 25 31 31 H 1.48504 * 109.47265 * 210.00147 * 29 27 25 32 32 H 1.48500 * 109.47176 * 330.00289 * 29 27 25 33 33 H 1.08998 * 109.46844 * 296.09515 * 1 2 3 34 34 H 1.08997 * 109.47169 * 56.10022 * 1 2 3 35 35 H 1.09001 * 109.46798 * 176.10046 * 1 2 3 36 36 H 1.08996 * 110.37016 * 86.07416 * 4 2 1 37 37 H 1.09003 * 110.45810 * 323.79844 * 4 2 1 38 38 H 1.08001 * 125.87802 * 0.02567 * 9 8 6 39 39 H 1.07994 * 126.47756 * 180.02562 * 19 12 10 40 40 H 1.08992 * 109.88665 * 239.52863 * 20 5 4 41 41 H 1.09003 * 110.00959 * 118.43028 * 20 5 4 42 42 H 1.09011 * 109.46863 * 173.54671 * 23 21 20 43 43 H 1.08994 * 109.46865 * 53.55090 * 23 21 20 44 44 H 0.96996 * 119.99885 * 0.02562 * 24 23 21 45 45 H 0.96998 * 119.99997 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0181 0.0000 4 6 2.0853 -0.8066 -1.2004 5 7 3.4271 -1.2431 -0.7734 6 6 4.4476 -1.5615 -1.5940 7 8 5.5441 -1.8128 -1.1318 8 6 4.2350 -1.6052 -3.0511 9 6 5.2040 -1.7722 -4.0169 10 7 4.6039 -1.7587 -5.2237 11 1 5.0554 -1.8586 -6.0764 12 6 3.2534 -1.5753 -5.0562 13 6 2.2499 -1.4974 -6.1413 14 7 0.9278 -1.3185 -5.9994 15 7 0.4139 -1.3085 -7.1824 16 7 1.3524 -1.4717 -8.0481 17 1 1.2294 -1.5022 -9.0097 18 7 2.4818 -1.5841 -7.4375 19 6 2.9943 -1.4771 -3.7279 20 6 3.4675 -1.2741 0.6960 21 6 2.0862 -0.8079 1.2022 22 1 1.4479 -1.6633 1.4239 23 6 2.2351 0.0875 2.4338 24 7 2.7616 -0.7013 3.5503 25 6 2.9846 -0.1067 4.7636 26 1 2.7682 0.9428 4.8985 27 6 3.4889 -0.8527 5.8199 28 7 3.7038 -0.2811 6.9859 29 14 3.8628 -2.6680 5.5866 30 1 5.2658 -2.8295 5.1279 31 1 3.6784 -3.3811 6.8761 32 1 2.9412 -3.2366 4.5704 33 1 -0.3633 0.4520 0.9229 34 1 -0.3633 0.5732 -0.8530 35 1 -0.3633 -1.0253 -0.0699 36 1 2.1559 -0.1720 -2.0837 37 1 1.4524 -1.6704 -1.4044 38 1 6.2618 -1.8956 -3.8375 39 1 2.0266 -1.3298 -3.2717 40 1 4.2426 -0.5997 1.0598 41 1 3.6662 -2.2883 1.0423 42 1 1.2618 0.4969 2.7052 43 1 2.9223 0.9031 2.2091 44 1 2.9563 -1.6437 3.4290 45 1 4.0559 -0.8026 7.7241 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580329822.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:30 Heat of formation + Delta-G solvation = 129.722815 kcal Electronic energy + Delta-G solvation = -29410.812173 eV Core-core repulsion = 25273.654482 eV Total energy + Delta-G solvation = -4137.157690 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -45.47815 -42.48019 -40.83590 -38.88683 -36.58415 -35.41864 -34.42675 -34.28145 -33.25050 -32.61535 -30.79693 -30.27150 -27.51124 -27.24452 -25.62410 -25.13958 -24.73371 -23.38116 -22.34341 -21.68422 -21.09376 -20.38399 -19.89843 -19.60243 -19.04297 -18.18532 -17.39722 -17.07152 -16.59241 -16.35803 -15.92186 -15.59871 -15.49790 -15.20031 -15.06665 -14.97064 -14.77062 -14.65661 -14.17015 -13.96607 -13.71826 -13.48964 -13.33325 -13.32260 -13.07510 -12.93137 -12.76508 -12.46173 -12.44025 -12.22793 -12.09389 -12.04981 -11.84032 -11.78997 -11.49678 -11.31951 -11.03286 -10.96116 -10.16153 -9.66500 -9.27816 -9.19132 -8.01579 -5.34322 -0.08675 0.36262 0.73548 1.35213 1.37855 1.42156 1.47791 1.76803 1.78097 2.09161 2.48659 2.49107 2.71896 3.29616 3.30180 3.37804 3.56292 3.73069 3.91944 4.04844 4.08581 4.18345 4.22276 4.27522 4.39654 4.44441 4.51884 4.60220 4.67223 4.72258 4.83224 4.88322 4.95456 4.95983 5.06743 5.22438 5.25337 5.32062 5.42573 5.46089 5.57872 5.59321 5.67551 5.77489 6.22510 6.33224 6.60672 7.08477 7.09262 7.21971 7.85764 8.03906 9.19928 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.019408 B = 0.002283 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.368246 B =12260.769205 C =13280.616553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.090 4.090 3 H 0.086 0.914 4 C 0.100 3.900 5 N -0.612 5.612 6 C 0.595 3.405 7 O -0.596 6.596 8 C -0.248 4.248 9 C 0.120 3.880 10 N -0.508 5.508 11 H 0.441 0.559 12 C 0.058 3.942 13 C 0.241 3.759 14 N -0.282 5.282 15 N -0.051 5.051 16 N -0.198 5.198 17 H 0.495 0.505 18 N -0.303 5.303 19 C -0.099 4.099 20 C 0.117 3.883 21 C -0.094 4.094 22 H 0.095 0.905 23 C 0.167 3.833 24 N -0.759 5.759 25 C -0.231 4.231 26 H 0.059 0.941 27 C -0.064 4.064 28 N -0.983 5.983 29 Si 0.950 3.050 30 H -0.284 1.284 31 H -0.293 1.293 32 H -0.249 1.249 33 H 0.056 0.944 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.103 0.897 37 H 0.091 0.909 38 H 0.208 0.792 39 H 0.173 0.827 40 H 0.047 0.953 41 H 0.052 0.948 42 H 0.039 0.961 43 H 0.021 0.979 44 H 0.365 0.635 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.957 -3.785 -39.776 40.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.109 4.109 3 H 0.104 0.896 4 C -0.022 4.022 5 N -0.344 5.344 6 C 0.387 3.613 7 O -0.479 6.479 8 C -0.258 4.258 9 C -0.023 4.023 10 N -0.103 5.103 11 H 0.282 0.718 12 C -0.055 4.055 13 C -0.039 4.039 14 N -0.155 5.155 15 N -0.046 5.046 16 N -0.049 5.049 17 H 0.354 0.646 18 N -0.156 5.156 19 C -0.126 4.126 20 C -0.006 4.006 21 C -0.114 4.114 22 H 0.113 0.887 23 C 0.041 3.959 24 N -0.405 5.405 25 C -0.362 4.362 26 H 0.077 0.923 27 C -0.255 4.255 28 N -0.634 5.634 29 Si 0.777 3.223 30 H -0.211 1.211 31 H -0.219 1.219 32 H -0.174 1.174 33 H 0.075 0.925 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.121 0.879 37 H 0.109 0.891 38 H 0.225 0.775 39 H 0.190 0.810 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.057 0.943 43 H 0.039 0.961 44 H 0.198 0.802 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.949 -3.698 -39.915 40.525 hybrid contribution 1.239 -0.986 0.115 1.588 sum -4.710 -4.684 -39.799 40.350 Atomic orbital electron populations 1.21690 0.91618 1.03127 1.02914 1.22382 0.97756 0.98975 0.91815 0.89579 1.22995 0.81712 0.99229 0.98226 1.48307 1.13459 1.66424 1.06169 1.17510 0.82211 0.75630 0.85922 1.90766 1.25548 1.53243 1.78354 1.19299 0.95174 1.20063 0.91216 1.22563 0.99437 0.98265 0.82059 1.41527 1.05416 1.53855 1.09498 0.71769 1.16417 0.81912 1.17134 0.90014 1.22510 0.90754 1.01946 0.88712 1.76158 1.06247 1.18807 1.14255 1.78931 1.17738 1.14641 0.93288 1.47722 1.00304 1.43051 1.13790 0.64560 1.74917 1.11013 1.23134 1.06552 1.21673 0.98898 1.01493 0.90559 1.21849 0.98384 1.00463 0.79954 1.22444 0.94760 0.99389 0.94771 0.88691 1.20768 0.96682 0.92996 0.85445 1.42754 1.79556 1.09112 1.09041 1.19046 1.34219 0.94833 0.88086 0.92299 1.25474 1.02114 1.02527 0.95431 1.69876 1.53162 1.37363 1.02973 0.85481 0.78516 0.81041 0.77249 1.21091 1.21934 1.17382 0.92494 0.90206 0.91457 0.87890 0.89051 0.77510 0.81006 0.93420 0.92942 0.94288 0.96127 0.80245 0.93378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.31 71.98 0.67 -1.53 16 2 C -0.09 -1.87 3.09 -9.40 -0.03 -1.90 16 3 H 0.09 1.86 8.05 -2.39 -0.02 1.84 16 4 C 0.10 1.91 4.57 86.86 0.40 2.31 16 5 N -0.61 -16.90 3.33 -815.78 -2.71 -19.61 16 6 C 0.59 17.69 7.83 86.63 0.68 18.37 16 7 O -0.60 -22.72 17.25 -4.10 -0.07 -22.79 16 8 C -0.25 -5.22 6.06 -20.08 -0.12 -5.34 16 9 C 0.12 1.75 11.74 84.14 0.99 2.74 16 10 N -0.51 -5.31 6.01 -182.99 -1.10 -6.41 16 11 H 0.44 1.88 8.96 -92.71 -0.83 1.05 16 12 C 0.06 0.85 7.08 40.29 0.29 1.14 16 13 C 0.24 3.55 8.20 137.16 1.12 4.68 16 14 N -0.28 -4.75 12.52 -52.37 -0.66 -5.40 16 15 N -0.05 -0.65 13.46 37.02 0.50 -0.15 16 16 N -0.20 -1.26 7.90 37.02 0.29 -0.97 16 17 H 0.50 -1.71 8.96 -347.52 -3.11 -4.83 16 18 N -0.30 -3.19 12.41 -52.32 -0.65 -3.84 16 19 C -0.10 -1.70 8.99 22.59 0.20 -1.50 16 20 C 0.12 3.82 6.16 86.73 0.53 4.35 16 21 C -0.09 -2.71 2.48 -9.61 -0.02 -2.73 16 22 H 0.09 2.60 8.04 -2.38 -0.02 2.58 16 23 C 0.17 6.31 5.58 86.38 0.48 6.79 16 24 N -0.76 -36.37 5.25 -343.46 -1.80 -38.18 16 25 C -0.23 -13.54 10.47 84.03 0.88 -12.66 16 26 H 0.06 3.75 8.06 -2.91 -0.02 3.73 16 27 C -0.06 -3.90 5.50 84.86 0.47 -3.43 16 28 N -0.98 -64.63 13.97 21.65 0.30 -64.33 16 29 Si 0.95 47.40 27.73 68.60 1.90 49.31 16 30 H -0.28 -14.19 7.11 99.48 0.71 -13.49 16 31 H -0.29 -14.61 7.11 99.48 0.71 -13.90 16 32 H -0.25 -11.18 6.52 99.48 0.65 -10.54 16 33 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.07 0.99 8.08 -2.39 -0.02 0.97 16 36 H 0.10 1.63 5.93 -2.39 -0.01 1.62 16 37 H 0.09 1.45 7.57 -2.39 -0.02 1.43 16 38 H 0.21 2.25 8.06 -2.91 -0.02 2.22 16 39 H 0.17 2.61 4.95 -2.91 -0.01 2.60 16 40 H 0.05 1.83 7.76 -2.39 -0.02 1.82 16 41 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 43 H 0.02 0.82 8.06 -2.39 -0.02 0.80 16 44 H 0.36 16.88 5.38 -92.71 -0.50 16.38 16 45 H 0.26 16.13 8.31 -92.71 -0.77 15.35 16 Total: -1.00 -85.34 376.37 -0.88 -86.22 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: -3.42 Total: 14.87 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: 6.53 Total: 11.27 kcal Atomic # 7 Polarization: -133.06 SS G_CDS: -5.83 Total: -138.88 kcal Atomic # 8 Polarization: -22.72 SS G_CDS: -0.07 Total: -22.79 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 1.90 Total: 49.31 kcal Total: -85.34 -0.88 -86.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580329822.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 215.947 kcal (2) G-P(sol) polarization free energy of solvation -85.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds