Wall clock time and date at job start Wed Apr 1 2020 03:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47017 * 2 1 4 4 N 1.46498 * 109.47109 * 240.00276 * 2 1 3 5 5 C 1.36941 * 120.00093 * 84.99771 * 4 2 1 6 6 H 1.08001 * 119.99820 * 0.02562 * 5 4 2 7 7 C 1.38808 * 119.99966 * 179.97438 * 5 4 2 8 8 N 1.31621 * 120.00150 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 119.99980 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47017 * 90.00307 * 9 7 5 11 11 H 1.48493 * 109.47163 * 210.00636 * 9 7 5 12 12 H 1.48503 * 109.46795 * 330.00252 * 9 7 5 13 13 C 1.52992 * 109.46952 * 120.00319 * 2 1 3 14 14 H 1.08996 * 110.88829 * 59.89671 * 13 2 1 15 15 C 1.55158 * 111.00416 * 183.81815 * 13 2 1 16 16 C 1.54341 * 103.02110 * 153.38184 * 15 13 2 17 17 N 1.47019 * 107.26542 * 338.13820 * 16 15 13 18 18 C 1.34773 * 125.64948 * 178.84455 * 17 16 15 19 19 O 1.21710 * 120.00339 * 179.69158 * 18 17 16 20 20 C 1.46604 * 119.99844 * 359.70121 * 18 17 16 21 21 C 1.38030 * 126.01162 * 180.02562 * 20 18 17 22 22 C 1.39387 * 107.43547 * 179.97438 * 21 20 18 23 23 C 1.37756 * 107.64814 * 0.02562 * 22 21 20 24 24 C 1.47923 * 125.81748 * 180.02562 * 23 22 21 25 25 N 1.34210 * 126.70248 * 179.64546 * 24 23 22 26 26 N 1.28977 * 107.24999 * 179.83172 * 25 24 23 27 27 N 1.28726 * 108.99836 * 0.43203 * 26 25 24 28 28 H 0.96999 * 125.31811 * 179.68257 * 27 26 25 29 29 N 1.28873 * 109.36226 * 359.72679 * 27 26 25 30 30 N 1.36385 * 108.36300 * 0.02562 * 23 22 21 31 31 H 0.96997 * 125.71162 * 180.02562 * 30 23 22 32 32 C 1.47425 * 108.70211 * 358.58878 * 17 16 15 33 33 H 1.08994 * 109.47346 * 185.07832 * 1 2 3 34 34 H 1.09001 * 109.47107 * 305.08363 * 1 2 3 35 35 H 1.09005 * 109.47246 * 65.07860 * 1 2 3 36 36 H 0.96999 * 120.00338 * 265.00633 * 4 2 1 37 37 H 0.97004 * 119.99864 * 179.97438 * 8 7 5 38 38 H 1.08996 * 110.72251 * 271.94058 * 15 13 2 39 39 H 1.09000 * 110.71827 * 35.03401 * 15 13 2 40 40 H 1.09001 * 109.98533 * 218.66797 * 16 15 13 41 41 H 1.08997 * 109.77867 * 97.49684 * 16 15 13 42 42 H 1.08005 * 126.28258 * 359.73080 * 21 20 18 43 43 H 1.08000 * 126.17946 * 179.97438 * 22 21 20 44 44 H 1.09001 * 110.36895 * 143.19383 * 32 17 16 45 45 H 1.08996 * 110.36580 * 265.40264 * 32 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1490 -0.0074 -2.3758 6 1 1.8925 1.0406 -2.4241 7 6 2.6122 -0.6616 -3.5090 8 7 2.9253 -1.9386 -3.4500 9 14 2.7913 0.2706 -5.1180 10 1 4.1536 0.8556 -5.2021 11 1 2.5813 -0.6606 -6.2555 12 1 1.7812 1.3577 -5.1752 13 6 2.0399 -0.7213 1.2492 14 1 1.6879 -1.7526 1.2733 15 6 3.5879 -0.6591 1.3343 16 6 3.8575 -0.7701 2.8499 17 7 2.6289 -0.3562 3.5432 18 6 2.4500 -0.3342 4.8788 19 8 1.3875 0.0339 5.3445 20 6 3.5354 -0.7535 5.7707 21 6 3.4877 -0.7806 7.1499 22 6 4.7235 -1.2406 7.6015 23 6 5.5071 -1.4867 6.4956 24 6 6.8983 -1.9891 6.5149 25 7 7.6749 -2.2412 5.4497 26 7 8.8110 -2.6589 5.8949 27 7 8.7725 -2.6862 7.1813 28 1 9.4998 -2.9676 7.7583 29 7 7.6165 -2.2823 7.5829 30 7 4.7816 -1.1884 5.3800 31 1 5.0914 -1.2704 4.4645 32 6 1.6270 0.0367 2.5355 33 1 -0.3634 -1.0236 0.0910 34 1 -0.3633 0.5907 0.8410 35 1 -0.3634 0.4330 -0.9320 36 1 2.2489 -1.6317 -1.1528 37 1 3.2487 -2.3958 -4.2421 38 1 4.0375 -1.4947 0.7981 39 1 3.9576 0.2900 0.9462 40 1 4.6809 -0.1133 3.1309 41 1 4.0988 -1.8014 3.1071 42 1 2.6483 -0.4940 7.7662 43 1 5.0146 -1.3782 8.6324 44 1 0.6300 -0.2691 2.8525 45 1 1.6579 1.1135 2.3697 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589959444.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:46 Heat of formation + Delta-G solvation = 155.138494 kcal Electronic energy + Delta-G solvation = -29373.220578 eV Core-core repulsion = 25237.164994 eV Total energy + Delta-G solvation = -4136.055584 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.88290 -41.68501 -39.68493 -37.78743 -35.34221 -34.79336 -33.82039 -32.60282 -31.53666 -30.74487 -29.77451 -29.10684 -27.49536 -25.44558 -25.04123 -24.23258 -23.27317 -21.79873 -21.44566 -20.80591 -20.21638 -19.70322 -19.59194 -17.88027 -17.59392 -17.13210 -16.58601 -16.33074 -15.50799 -14.97247 -14.80329 -14.52907 -14.31719 -14.07935 -13.84407 -13.53540 -13.34468 -13.20358 -13.04171 -12.76602 -12.62648 -12.47570 -12.45301 -12.18834 -11.84151 -11.77476 -11.61080 -11.37144 -11.26753 -10.91695 -10.78585 -10.63402 -10.48793 -10.26225 -10.23587 -9.90483 -9.66951 -9.42402 -8.94586 -8.84146 -8.39907 -6.99828 -5.79855 -3.08489 0.43245 0.84075 1.68003 1.70956 2.49571 2.61889 2.83364 3.17781 3.32096 3.41329 3.47250 3.48433 3.84582 4.26634 4.54618 4.58487 4.73973 4.80250 4.90875 4.93040 4.99075 5.08920 5.14927 5.26444 5.49275 5.57176 5.64515 5.77449 5.82241 5.83613 5.90076 5.91943 5.97114 6.07775 6.15184 6.28974 6.30180 6.39311 6.49105 6.52294 6.60632 6.83485 6.87279 7.06967 7.33469 7.67675 7.67930 7.96177 8.38594 9.50216 10.06694 10.41570 11.42676 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.012535 B = 0.002393 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.248676 B =11696.066688 C =13697.520970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.186 3.814 3 H 0.050 0.950 4 N -0.722 5.722 5 C -0.237 4.237 6 H 0.070 0.930 7 C -0.013 4.013 8 N -0.933 5.933 9 Si 0.905 3.095 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.282 1.282 13 C -0.102 4.102 14 H 0.083 0.917 15 C -0.112 4.112 16 C 0.082 3.918 17 N -0.614 5.614 18 C 0.600 3.400 19 O -0.526 6.526 20 C -0.009 4.009 21 C -0.113 4.113 22 C -0.141 4.141 23 C 0.099 3.901 24 C 0.243 3.757 25 N -0.275 5.275 26 N -0.041 5.041 27 N -0.224 5.224 28 H 0.478 0.522 29 N -0.280 5.280 30 N -0.518 5.518 31 H 0.427 0.573 32 C 0.115 3.885 33 H 0.045 0.955 34 H 0.038 0.962 35 H 0.056 0.944 36 H 0.383 0.617 37 H 0.255 0.745 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.159 0.841 43 H 0.155 0.845 44 H 0.082 0.918 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.278 -0.769 24.825 26.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.075 3.925 3 H 0.068 0.932 4 N -0.363 5.363 5 C -0.368 4.368 6 H 0.088 0.912 7 C -0.209 4.209 8 N -0.581 5.581 9 Si 0.736 3.264 10 H -0.218 1.218 11 H -0.218 1.218 12 H -0.208 1.208 13 C -0.122 4.122 14 H 0.101 0.899 15 C -0.150 4.150 16 C -0.041 4.041 17 N -0.348 5.348 18 C 0.389 3.611 19 O -0.402 6.402 20 C -0.127 4.127 21 C -0.139 4.139 22 C -0.169 4.169 23 C -0.021 4.021 24 C -0.037 4.037 25 N -0.149 5.149 26 N -0.036 5.036 27 N -0.071 5.071 28 H 0.333 0.667 29 N -0.132 5.132 30 N -0.119 5.119 31 H 0.272 0.728 32 C -0.007 4.007 33 H 0.065 0.935 34 H 0.057 0.943 35 H 0.075 0.925 36 H 0.217 0.783 37 H 0.065 0.935 38 H 0.110 0.890 39 H 0.102 0.898 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.177 0.823 43 H 0.173 0.827 44 H 0.100 0.900 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 9.314 -0.650 24.496 26.215 hybrid contribution 0.630 -0.073 -0.883 1.087 sum 9.944 -0.724 23.613 25.632 Atomic orbital electron populations 1.22497 0.99129 1.00697 1.00535 1.20125 0.91893 0.95149 0.85312 0.93196 1.42365 1.78184 1.10649 1.05121 1.19207 1.36448 0.93840 0.87280 0.91212 1.24717 1.02211 0.95943 0.97998 1.69654 1.50925 1.08622 1.28905 0.86226 0.77768 0.78623 0.83790 1.21769 1.21839 1.20800 1.22697 0.94876 1.00441 0.94198 0.89881 1.22564 0.96735 1.04691 0.91050 1.22398 0.87152 0.98995 0.95574 1.48498 1.16108 1.65336 1.04827 1.16605 0.86154 0.78323 0.80029 1.90864 1.25958 1.48414 1.74985 1.20605 0.85844 1.11242 0.94977 1.21248 0.98482 1.02749 0.91396 1.21129 0.93093 1.05134 0.97548 1.16917 0.87213 1.10212 0.87756 1.22471 0.95159 1.01154 0.84909 1.76209 0.97351 1.15787 1.25516 1.78925 1.16706 1.14329 0.93617 1.47769 1.11764 1.41526 1.06041 0.66723 1.74987 0.94187 1.18350 1.25684 1.42671 1.10986 1.49186 1.09100 0.72846 1.22376 0.92168 0.99582 0.86552 0.93535 0.94312 0.92494 0.78296 0.93537 0.89020 0.89776 0.91462 0.91515 0.82344 0.82712 0.90003 0.90838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.89 9.23 37.16 0.34 -2.54 16 2 C 0.19 3.35 2.40 -67.94 -0.16 3.19 16 3 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 4 N -0.72 -16.72 4.88 -53.43 -0.26 -16.98 16 5 C -0.24 -6.24 9.93 -15.06 -0.15 -6.38 16 6 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 7 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 8 N -0.93 -27.22 13.06 55.49 0.72 -26.50 16 9 Si 0.90 21.87 29.55 -169.99 -5.02 16.85 16 10 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 C -0.10 -1.51 2.64 -88.47 -0.23 -1.74 16 14 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 15 C -0.11 -1.53 6.19 -24.89 -0.15 -1.68 16 16 C 0.08 0.92 5.10 -3.06 -0.02 0.91 16 17 N -0.61 -8.00 3.33 -172.08 -0.57 -8.58 16 18 C 0.60 8.40 7.82 -12.89 -0.10 8.29 16 19 O -0.53 -8.83 17.13 5.18 0.09 -8.74 16 20 C -0.01 -0.11 6.88 -81.95 -0.56 -0.67 16 21 C -0.11 -1.17 10.60 -39.23 -0.42 -1.59 16 22 C -0.14 -1.30 10.79 -39.33 -0.42 -1.72 16 23 C 0.10 1.00 7.12 -82.05 -0.58 0.42 16 24 C 0.24 2.44 8.21 -156.23 -1.28 1.16 16 25 N -0.27 -2.99 12.54 32.09 0.40 -2.58 16 26 N -0.04 -0.36 13.46 60.35 0.81 0.45 16 27 N -0.22 -1.29 7.90 60.35 0.48 -0.81 16 28 H 0.48 0.35 8.96 -340.33 -3.05 -2.70 16 29 N -0.28 -2.27 12.39 32.10 0.40 -1.87 16 30 N -0.52 -5.40 5.65 -5.81 -0.03 -5.44 16 31 H 0.43 4.12 4.88 -40.82 -0.20 3.92 16 32 C 0.12 1.57 5.52 -2.53 -0.01 1.56 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.04 0.56 7.60 -51.93 -0.39 0.17 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.38 9.49 7.80 -40.82 -0.32 9.18 16 37 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 38 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 39 H 0.08 1.20 8.04 -51.93 -0.42 0.79 16 40 H 0.07 0.66 7.25 -51.93 -0.38 0.29 16 41 H 0.07 0.68 7.06 -51.93 -0.37 0.31 16 42 H 0.16 1.46 8.06 -52.48 -0.42 1.04 16 43 H 0.16 1.08 8.06 -52.49 -0.42 0.66 16 44 H 0.08 1.15 8.04 -51.93 -0.42 0.73 16 45 H 0.07 0.98 8.04 -51.93 -0.42 0.57 16 LS Contribution 379.69 15.07 5.72 5.72 Total: -1.00 -33.27 379.69 -9.58 -42.85 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -8.46 Total: 6.89 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: -3.85 Total: -1.26 kcal Atomic # 7 Polarization: -64.25 SS G_CDS: 1.95 Total: -62.31 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: 0.09 Total: -8.74 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.27 -9.58 -42.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589959444.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.986 kcal (2) G-P(sol) polarization free energy of solvation -33.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 164.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 155.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds