Wall clock time and date at job start Wed Apr 1 2020 03:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47017 * 2 1 4 4 N 1.46498 * 109.47109 * 240.00276 * 2 1 3 5 5 C 1.36941 * 120.00093 * 84.99771 * 4 2 1 6 6 H 1.08001 * 119.99820 * 0.02562 * 5 4 2 7 7 C 1.38808 * 119.99966 * 179.97438 * 5 4 2 8 8 N 1.31621 * 120.00150 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 119.99980 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47017 * 90.00307 * 9 7 5 11 11 H 1.48493 * 109.47163 * 210.00636 * 9 7 5 12 12 H 1.48503 * 109.46795 * 330.00252 * 9 7 5 13 13 C 1.52992 * 109.46952 * 120.00319 * 2 1 3 14 14 H 1.08996 * 110.88829 * 59.89671 * 13 2 1 15 15 C 1.55158 * 111.00416 * 183.81815 * 13 2 1 16 16 C 1.54341 * 103.02110 * 153.38184 * 15 13 2 17 17 N 1.47019 * 107.26542 * 338.13820 * 16 15 13 18 18 C 1.34773 * 125.64948 * 178.84455 * 17 16 15 19 19 O 1.21710 * 120.00339 * 179.69158 * 18 17 16 20 20 C 1.46604 * 119.99844 * 359.70121 * 18 17 16 21 21 C 1.38030 * 126.01162 * 180.02562 * 20 18 17 22 22 C 1.39387 * 107.43547 * 179.97438 * 21 20 18 23 23 C 1.37756 * 107.64814 * 0.02562 * 22 21 20 24 24 C 1.47923 * 125.81748 * 180.02562 * 23 22 21 25 25 N 1.34210 * 126.70248 * 179.64546 * 24 23 22 26 26 N 1.28977 * 107.24999 * 179.83172 * 25 24 23 27 27 N 1.28726 * 108.99836 * 0.43203 * 26 25 24 28 28 H 0.96999 * 125.31811 * 179.68257 * 27 26 25 29 29 N 1.28873 * 109.36226 * 359.72679 * 27 26 25 30 30 N 1.36385 * 108.36300 * 0.02562 * 23 22 21 31 31 H 0.96997 * 125.71162 * 180.02562 * 30 23 22 32 32 C 1.47425 * 108.70211 * 358.58878 * 17 16 15 33 33 H 1.08994 * 109.47346 * 185.07832 * 1 2 3 34 34 H 1.09001 * 109.47107 * 305.08363 * 1 2 3 35 35 H 1.09005 * 109.47246 * 65.07860 * 1 2 3 36 36 H 0.96999 * 120.00338 * 265.00633 * 4 2 1 37 37 H 0.97004 * 119.99864 * 179.97438 * 8 7 5 38 38 H 1.08996 * 110.72251 * 271.94058 * 15 13 2 39 39 H 1.09000 * 110.71827 * 35.03401 * 15 13 2 40 40 H 1.09001 * 109.98533 * 218.66797 * 16 15 13 41 41 H 1.08997 * 109.77867 * 97.49684 * 16 15 13 42 42 H 1.08005 * 126.28258 * 359.73080 * 21 20 18 43 43 H 1.08000 * 126.17946 * 179.97438 * 22 21 20 44 44 H 1.09001 * 110.36895 * 143.19383 * 32 17 16 45 45 H 1.08996 * 110.36580 * 265.40264 * 32 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1490 -0.0074 -2.3758 6 1 1.8925 1.0406 -2.4241 7 6 2.6122 -0.6616 -3.5090 8 7 2.9253 -1.9386 -3.4500 9 14 2.7913 0.2706 -5.1180 10 1 4.1536 0.8556 -5.2021 11 1 2.5813 -0.6606 -6.2555 12 1 1.7812 1.3577 -5.1752 13 6 2.0399 -0.7213 1.2492 14 1 1.6879 -1.7526 1.2733 15 6 3.5879 -0.6591 1.3343 16 6 3.8575 -0.7701 2.8499 17 7 2.6289 -0.3562 3.5432 18 6 2.4500 -0.3342 4.8788 19 8 1.3875 0.0339 5.3445 20 6 3.5354 -0.7535 5.7707 21 6 3.4877 -0.7806 7.1499 22 6 4.7235 -1.2406 7.6015 23 6 5.5071 -1.4867 6.4956 24 6 6.8983 -1.9891 6.5149 25 7 7.6749 -2.2412 5.4497 26 7 8.8110 -2.6589 5.8949 27 7 8.7725 -2.6862 7.1813 28 1 9.4998 -2.9676 7.7583 29 7 7.6165 -2.2823 7.5829 30 7 4.7816 -1.1884 5.3800 31 1 5.0914 -1.2704 4.4645 32 6 1.6270 0.0367 2.5355 33 1 -0.3634 -1.0236 0.0910 34 1 -0.3633 0.5907 0.8410 35 1 -0.3634 0.4330 -0.9320 36 1 2.2489 -1.6317 -1.1528 37 1 3.2487 -2.3958 -4.2421 38 1 4.0375 -1.4947 0.7981 39 1 3.9576 0.2900 0.9462 40 1 4.6809 -0.1133 3.1309 41 1 4.0988 -1.8014 3.1071 42 1 2.6483 -0.4940 7.7662 43 1 5.0146 -1.3782 8.6324 44 1 0.6300 -0.2691 2.8525 45 1 1.6579 1.1135 2.3697 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589959444.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:45 Heat of formation + Delta-G solvation = 131.736582 kcal Electronic energy + Delta-G solvation = -29374.235361 eV Core-core repulsion = 25237.164994 eV Total energy + Delta-G solvation = -4137.070367 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -45.53529 -42.52801 -40.74316 -38.99903 -36.86877 -35.45714 -34.55208 -34.26294 -32.49737 -31.97489 -30.89946 -30.37722 -28.78238 -26.55956 -25.78469 -25.63331 -24.43412 -23.04368 -22.34173 -21.72725 -21.10783 -20.99573 -20.25373 -19.18625 -18.70138 -18.23869 -17.57852 -17.48935 -16.66649 -16.35553 -15.80935 -15.59974 -15.46213 -15.15831 -15.02925 -14.85301 -14.72777 -14.12803 -14.01107 -13.89665 -13.85774 -13.66810 -13.47951 -13.20824 -13.16519 -12.91392 -12.76319 -12.51083 -12.32235 -12.29561 -12.17384 -12.05492 -12.00424 -11.73937 -11.55059 -11.44027 -11.30706 -10.90543 -10.19669 -9.88565 -9.21089 -8.95924 -7.89799 -5.16434 -0.28929 0.12368 0.85242 1.19290 1.49872 1.50177 1.58160 1.69239 1.86494 1.92044 2.21947 2.59025 2.60779 3.15408 3.27057 3.44408 3.51182 3.65499 3.80040 4.01370 4.06547 4.18701 4.21815 4.25101 4.29535 4.37764 4.40317 4.57986 4.62627 4.71298 4.82718 4.89133 4.91218 5.00848 5.07146 5.15106 5.17427 5.27855 5.38748 5.50350 5.56404 5.57139 5.62557 5.73744 6.08397 6.29662 6.33101 6.90590 7.01448 7.39790 8.15876 8.39077 9.33475 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.012535 B = 0.002393 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.248676 B =11696.066688 C =13697.520970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.183 3.817 3 H 0.049 0.951 4 N -0.730 5.730 5 C -0.229 4.229 6 H 0.074 0.926 7 C -0.074 4.074 8 N -0.968 5.968 9 Si 0.964 3.036 10 H -0.289 1.289 11 H -0.300 1.300 12 H -0.272 1.272 13 C -0.093 4.093 14 H 0.078 0.922 15 C -0.109 4.109 16 C 0.090 3.910 17 N -0.614 5.614 18 C 0.600 3.400 19 O -0.561 6.561 20 C -0.031 4.031 21 C -0.109 4.109 22 C -0.135 4.135 23 C 0.099 3.901 24 C 0.230 3.770 25 N -0.302 5.302 26 N -0.051 5.051 27 N -0.193 5.193 28 H 0.498 0.502 29 N -0.272 5.272 30 N -0.516 5.516 31 H 0.428 0.572 32 C 0.121 3.879 33 H 0.043 0.957 34 H 0.068 0.932 35 H 0.036 0.964 36 H 0.373 0.627 37 H 0.248 0.752 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.167 0.833 43 H 0.179 0.821 44 H 0.079 0.921 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.279 -0.275 26.849 28.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.074 3.926 3 H 0.067 0.933 4 N -0.370 5.370 5 C -0.361 4.361 6 H 0.092 0.908 7 C -0.266 4.266 8 N -0.619 5.619 9 Si 0.794 3.206 10 H -0.216 1.216 11 H -0.227 1.227 12 H -0.198 1.198 13 C -0.113 4.113 14 H 0.097 0.903 15 C -0.147 4.147 16 C -0.033 4.033 17 N -0.347 5.347 18 C 0.391 3.609 19 O -0.440 6.440 20 C -0.148 4.148 21 C -0.135 4.135 22 C -0.162 4.162 23 C -0.021 4.021 24 C -0.051 4.051 25 N -0.175 5.175 26 N -0.046 5.046 27 N -0.045 5.045 28 H 0.358 0.642 29 N -0.126 5.126 30 N -0.118 5.118 31 H 0.273 0.727 32 C -0.001 4.001 33 H 0.062 0.938 34 H 0.087 0.913 35 H 0.055 0.945 36 H 0.205 0.795 37 H 0.057 0.943 38 H 0.099 0.901 39 H 0.096 0.904 40 H 0.104 0.896 41 H 0.099 0.901 42 H 0.185 0.815 43 H 0.196 0.804 44 H 0.098 0.902 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 10.329 -0.130 26.544 28.483 hybrid contribution 0.390 -0.234 -1.359 1.433 sum 10.720 -0.364 25.185 27.374 Atomic orbital electron populations 1.22370 0.98049 1.00926 1.00702 1.20298 0.92463 0.94958 0.84875 0.93255 1.42514 1.78324 1.10274 1.05927 1.19548 1.34247 0.94038 0.88276 0.90829 1.25417 1.03406 0.96775 1.01028 1.69797 1.52909 1.10020 1.29191 0.85276 0.77773 0.77467 0.80084 1.21590 1.22692 1.19756 1.22475 0.95734 0.99839 0.93265 0.90336 1.22470 0.95664 1.03872 0.92720 1.22394 0.86979 1.00370 0.93552 1.48492 1.16363 1.65124 1.04723 1.16847 0.86239 0.77696 0.80149 1.90837 1.27420 1.50203 1.75537 1.20360 0.85994 1.13289 0.95124 1.21480 0.99181 1.01880 0.90964 1.21386 0.92206 1.04198 0.98424 1.17140 0.87422 1.09614 0.87892 1.22498 0.95307 1.02035 0.85212 1.76191 0.98035 1.16834 1.26418 1.78876 1.16270 1.14788 0.94638 1.47847 1.11667 1.39399 1.05619 0.64247 1.74956 0.94569 1.17918 1.25120 1.42593 1.10602 1.49211 1.09375 0.72683 1.22244 0.92315 0.99603 0.85961 0.93815 0.91345 0.94516 0.79480 0.94264 0.90070 0.90444 0.89581 0.90131 0.81509 0.80368 0.90219 0.90316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.39 9.23 71.98 0.66 -4.72 16 2 C 0.18 6.53 2.40 44.99 0.11 6.64 16 3 H 0.05 1.79 8.08 -2.39 -0.02 1.77 16 4 N -0.73 -34.10 4.88 -322.96 -1.58 -35.67 16 5 C -0.23 -12.09 9.93 84.03 0.83 -11.26 16 6 H 0.07 3.77 7.83 -2.91 -0.02 3.74 16 7 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 8 N -0.97 -57.55 13.06 21.65 0.28 -57.26 16 9 Si 0.96 45.30 29.55 68.60 2.03 47.33 16 10 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 11 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 12 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 13 C -0.09 -2.71 2.64 -9.40 -0.02 -2.73 16 14 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 15 C -0.11 -2.92 6.19 31.79 0.20 -2.72 16 16 C 0.09 1.91 5.10 86.74 0.44 2.35 16 17 N -0.61 -15.38 3.33 -816.54 -2.72 -18.10 16 18 C 0.60 16.30 7.82 86.43 0.68 16.97 16 19 O -0.56 -18.60 17.13 -4.38 -0.08 -18.68 16 20 C -0.03 -0.69 6.88 40.36 0.28 -0.42 16 21 C -0.11 -2.07 10.60 22.50 0.24 -1.84 16 22 C -0.13 -2.16 10.79 22.43 0.24 -1.92 16 23 C 0.10 1.83 7.12 40.89 0.29 2.12 16 24 C 0.23 4.18 8.21 137.11 1.13 5.30 16 25 N -0.30 -6.13 12.54 -52.40 -0.66 -6.79 16 26 N -0.05 -0.81 13.46 37.02 0.50 -0.32 16 27 N -0.19 -1.75 7.90 37.02 0.29 -1.46 16 28 H 0.50 -0.64 8.96 -347.50 -3.11 -3.75 16 29 N -0.27 -3.74 12.39 -52.35 -0.65 -4.39 16 30 N -0.52 -10.02 5.65 -172.28 -0.97 -10.99 16 31 H 0.43 7.68 4.88 -92.71 -0.45 7.22 16 32 C 0.12 3.18 5.52 86.86 0.48 3.66 16 33 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.07 1.88 7.60 -2.39 -0.02 1.86 16 35 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 36 H 0.37 18.85 7.80 -92.71 -0.72 18.12 16 37 H 0.25 14.49 8.31 -92.70 -0.77 13.71 16 38 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 39 H 0.08 2.18 8.04 -2.39 -0.02 2.16 16 40 H 0.09 1.55 7.25 -2.39 -0.02 1.54 16 41 H 0.08 1.53 7.06 -2.39 -0.02 1.51 16 42 H 0.17 2.82 8.06 -2.91 -0.02 2.80 16 43 H 0.18 1.92 8.06 -2.91 -0.02 1.90 16 44 H 0.08 2.15 8.04 -2.39 -0.02 2.13 16 45 H 0.08 2.00 8.04 -2.39 -0.02 1.98 16 Total: -1.00 -71.41 379.69 -0.74 -72.15 By element: Atomic # 1 Polarization: 29.60 SS G_CDS: -3.22 Total: 26.38 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: 6.02 Total: 7.79 kcal Atomic # 7 Polarization: -129.48 SS G_CDS: -5.50 Total: -134.98 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: -0.08 Total: -18.68 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -71.41 -0.74 -72.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589959444.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 203.889 kcal (2) G-P(sol) polarization free energy of solvation -71.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds