Wall clock time and date at job start Wed Apr 1 2020 02:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.58821 * 2 1 4 4 C 1.53190 * 109.70508 * 120.35433 * 2 1 3 5 5 H 1.08992 * 109.50270 * 294.44706 * 4 2 1 6 6 N 1.46511 * 109.49416 * 54.51204 * 4 2 1 7 7 C 1.34771 * 119.99655 * 204.99913 * 6 4 2 8 8 O 1.21713 * 120.00480 * 359.97438 * 7 6 4 9 9 C 1.46615 * 119.99694 * 179.97438 * 7 6 4 10 10 C 1.38034 * 126.00587 * 179.69292 * 9 7 6 11 11 C 1.39395 * 107.42407 * 179.84450 * 10 9 7 12 12 C 1.37753 * 107.65416 * 0.42025 * 11 10 9 13 13 C 1.47917 * 125.82026 * 179.74567 * 12 11 10 14 14 N 1.34203 * 126.70432 * 179.68132 * 13 12 11 15 15 N 1.28985 * 107.25348 * 179.88700 * 14 13 12 16 16 N 1.28722 * 108.99266 * 0.37817 * 15 14 13 17 17 H 0.96998 * 125.31928 * 179.71868 * 16 15 14 18 18 N 1.28869 * 109.36650 * 359.75912 * 16 15 14 19 19 N 1.36388 * 108.36308 * 359.73609 * 12 11 10 20 20 H 0.96999 * 125.71485 * 179.97438 * 19 12 11 21 21 C 1.53040 * 109.31492 * 174.49064 * 4 2 1 22 22 C 1.53038 * 109.53828 * 298.64023 * 21 4 2 23 23 C 1.52766 * 109.38434 * 61.23830 * 22 21 4 24 24 N 1.46922 * 109.58706 * 239.72026 * 2 1 3 25 25 C 1.36928 * 120.63248 * 6.43715 * 24 2 1 26 26 H 1.08007 * 119.99895 * 332.62233 * 25 24 2 27 27 C 1.38813 * 120.00205 * 152.61834 * 25 24 2 28 28 N 1.31614 * 120.00178 * 334.22527 * 27 25 24 29 29 Si 1.86804 * 120.00038 * 154.22668 * 27 25 24 30 30 H 1.48498 * 109.47004 * 270.00320 * 29 27 25 31 31 H 1.48502 * 109.47258 * 30.00100 * 29 27 25 32 32 H 1.48496 * 109.47424 * 150.00230 * 29 27 25 33 33 H 1.08994 * 109.47202 * 180.28067 * 1 2 3 34 34 H 1.09003 * 109.47062 * 300.28169 * 1 2 3 35 35 H 1.09000 * 109.47146 * 60.27907 * 1 2 3 36 36 H 0.97001 * 120.00001 * 24.99379 * 6 4 2 37 37 H 1.07996 * 126.28799 * 359.97438 * 10 9 7 38 38 H 1.07997 * 126.17166 * 180.12115 * 11 10 9 39 39 H 1.09000 * 109.45827 * 58.66095 * 21 4 2 40 40 H 1.09000 * 109.46323 * 178.63644 * 21 4 2 41 41 H 1.09000 * 109.49787 * 181.31657 * 22 21 4 42 42 H 1.09000 * 109.50018 * 301.37948 * 22 21 4 43 43 H 1.08998 * 109.50941 * 185.70314 * 23 22 21 44 44 H 1.08997 * 109.42694 * 65.42523 * 23 22 21 45 45 H 0.96996 * 119.99637 * 354.53076 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0465 -0.7288 1.2445 5 1 1.7689 -0.1673 2.1364 6 7 1.4565 -2.0684 1.3067 7 6 1.3363 -2.6973 2.4926 8 8 1.7181 -2.1526 3.5119 9 6 0.7453 -4.0377 2.5549 10 6 0.5685 -4.7943 3.6958 11 6 -0.0271 -5.9948 3.3123 12 6 -0.1965 -5.9593 1.9457 13 6 -0.7890 -7.0330 1.1186 14 7 -0.9679 -7.0149 -0.2113 15 7 -1.5097 -8.1384 -0.5398 16 7 -1.6818 -8.8466 0.5213 17 1 -2.0754 -9.7327 0.5463 18 7 -1.2502 -8.1940 1.5452 19 7 0.2749 -4.7652 1.4852 20 1 0.2784 -4.4770 0.5590 21 6 3.5706 -0.8443 1.1674 22 6 3.9602 -1.6607 -0.0671 23 6 3.4647 -0.9473 -1.3238 24 7 2.0225 -0.6979 -1.1954 25 6 1.1534 -1.1132 -2.1685 26 1 0.1294 -1.3448 -1.9150 27 6 1.5883 -1.2364 -3.4810 28 7 2.6045 -0.5171 -3.9078 29 14 0.7313 -2.4232 -4.6415 30 1 1.3861 -3.7536 -4.5613 31 1 -0.6966 -2.5502 -4.2540 32 1 0.8231 -1.9093 -6.0317 33 1 -0.3633 -1.0276 0.0050 34 1 -0.3633 0.5182 0.8875 35 1 -0.3633 0.5095 -0.8925 36 1 1.1524 -2.5026 0.4943 37 1 0.8395 -4.5078 4.7011 38 1 -0.3012 -6.8083 3.9676 39 1 4.0071 0.1519 1.0965 40 1 3.9430 -1.3411 2.0633 41 1 5.0446 -1.7624 -0.1086 42 1 3.5041 -2.6490 -0.0085 43 1 3.6510 -1.5744 -2.1957 44 1 3.9912 0.0007 -1.4338 45 1 2.9987 0.1556 -3.3309 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001590171063.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:20 Heat of formation + Delta-G solvation = 151.765550 kcal Electronic energy + Delta-G solvation = -30852.237807 eV Core-core repulsion = 26716.035961 eV Total energy + Delta-G solvation = -4136.201846 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -44.70377 -41.36335 -39.51070 -37.63962 -34.61524 -34.27345 -33.63985 -32.63890 -31.96809 -31.15945 -29.83626 -28.84821 -26.43624 -25.06434 -24.90372 -24.62927 -22.63111 -21.62799 -21.02314 -20.66410 -20.03312 -19.70911 -18.83208 -18.50183 -17.41623 -17.07370 -16.20252 -15.42613 -15.22813 -14.72091 -14.53631 -14.38250 -14.18214 -14.00012 -13.84883 -13.59706 -13.22748 -13.15172 -13.03544 -12.83620 -12.68177 -12.30030 -11.86527 -11.65836 -11.54101 -11.42359 -11.30737 -11.18159 -11.05378 -10.86788 -10.66934 -10.28571 -10.14820 -10.11384 -9.89606 -9.83573 -9.22809 -9.21405 -8.76824 -8.41798 -8.20259 -6.96906 -6.12355 -3.30614 0.61802 1.04329 1.87985 1.90532 2.72171 2.81377 3.40444 3.47682 3.48362 3.49002 3.50958 3.64160 4.03288 4.51523 4.93951 4.94759 5.08164 5.11423 5.15540 5.23921 5.29729 5.41514 5.50356 5.57725 5.77602 5.83487 5.95996 5.98398 6.08438 6.08510 6.14829 6.28458 6.34840 6.43589 6.45730 6.50016 6.58627 6.66792 6.74795 6.83660 6.91417 7.04374 7.09037 7.15942 7.81183 7.86358 7.93307 8.37949 8.51103 9.03191 9.77614 10.21334 11.15408 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.008905 B = 0.004264 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3143.520407 B = 6564.456510 C = 8976.400615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.160 3.840 3 H 0.039 0.961 4 C 0.135 3.865 5 H 0.081 0.919 6 N -0.698 5.698 7 C 0.581 3.419 8 O -0.537 6.537 9 C -0.007 4.007 10 C -0.118 4.118 11 C -0.143 4.143 12 C 0.100 3.900 13 C 0.244 3.756 14 N -0.270 5.270 15 N -0.042 5.042 16 N -0.227 5.227 17 H 0.477 0.523 18 N -0.282 5.282 19 N -0.512 5.512 20 H 0.428 0.572 21 C -0.122 4.122 22 C -0.134 4.134 23 C 0.150 3.850 24 N -0.594 5.594 25 C -0.356 4.356 26 H 0.063 0.937 27 C -0.018 4.018 28 N -0.912 5.912 29 Si 1.060 2.940 30 H -0.292 1.292 31 H -0.291 1.291 32 H -0.290 1.290 33 H 0.052 0.948 34 H 0.040 0.960 35 H 0.064 0.936 36 H 0.404 0.596 37 H 0.157 0.843 38 H 0.154 0.846 39 H 0.064 0.936 40 H 0.055 0.945 41 H 0.050 0.950 42 H 0.054 0.946 43 H 0.079 0.921 44 H 0.017 0.983 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.104 -13.083 12.249 18.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.053 3.947 3 H 0.057 0.943 4 C 0.029 3.971 5 H 0.099 0.901 6 N -0.349 5.349 7 C 0.367 3.633 8 O -0.414 6.414 9 C -0.125 4.125 10 C -0.144 4.144 11 C -0.171 4.171 12 C -0.019 4.019 13 C -0.036 4.036 14 N -0.144 5.144 15 N -0.037 5.037 16 N -0.073 5.073 17 H 0.331 0.669 18 N -0.135 5.135 19 N -0.108 5.108 20 H 0.268 0.732 21 C -0.160 4.160 22 C -0.174 4.174 23 C 0.024 3.976 24 N -0.319 5.319 25 C -0.485 4.485 26 H 0.081 0.919 27 C -0.221 4.221 28 N -0.551 5.551 29 Si 0.890 3.110 30 H -0.220 1.220 31 H -0.218 1.218 32 H -0.217 1.217 33 H 0.071 0.929 34 H 0.059 0.941 35 H 0.083 0.917 36 H 0.241 0.759 37 H 0.174 0.826 38 H 0.171 0.829 39 H 0.083 0.917 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.073 0.927 43 H 0.098 0.902 44 H 0.035 0.965 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.006 -13.480 10.630 18.187 hybrid contribution -0.283 0.127 0.969 1.017 sum -6.289 -13.353 11.598 18.771 Atomic orbital electron populations 1.21757 0.95356 1.01406 1.00544 1.20710 0.93606 0.93748 0.86601 0.94336 1.21576 0.92923 0.82551 1.00061 0.90104 1.45941 1.61506 1.18876 1.08543 1.17021 0.78765 0.83223 0.84292 1.90819 1.50529 1.65823 1.34259 1.20801 1.09221 0.94963 0.87526 1.21206 1.02254 0.93141 0.97795 1.21081 1.04909 0.99632 0.91468 1.16850 1.08052 0.85674 0.91359 1.22491 1.00339 0.92096 0.88670 1.76269 1.15027 1.11958 1.11106 1.78940 1.12957 0.98722 1.13109 1.47758 1.39782 1.18337 1.01418 0.66874 1.74967 1.17169 1.06477 1.14862 1.42013 1.45730 1.12798 1.10281 0.73211 1.21781 0.95389 1.00557 0.98308 1.21943 0.99183 0.99540 0.96707 1.20892 0.84131 0.96916 0.95654 1.44255 1.02643 1.65362 1.19604 1.19960 0.95310 1.44516 0.88724 0.91904 1.25760 0.99963 1.01016 0.95396 1.70741 1.26294 1.20091 1.38011 0.83577 0.75063 0.76166 0.76169 1.21961 1.21776 1.21679 0.92943 0.94091 0.91705 0.75945 0.82563 0.82880 0.91713 0.92617 0.93086 0.92686 0.90244 0.96547 0.91864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.38 7.73 37.16 0.29 -2.09 16 2 C 0.16 3.05 3.19 -67.60 -0.22 2.83 16 3 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 4 C 0.13 2.30 2.33 -67.81 -0.16 2.14 16 5 H 0.08 1.38 7.57 -51.93 -0.39 0.98 16 6 N -0.70 -11.29 3.46 -55.01 -0.19 -11.48 16 7 C 0.58 9.35 7.75 -12.88 -0.10 9.25 16 8 O -0.54 -9.92 16.54 5.18 0.09 -9.84 16 9 C -0.01 -0.10 7.04 -81.95 -0.58 -0.68 16 10 C -0.12 -1.45 10.60 -39.23 -0.42 -1.87 16 11 C -0.14 -1.58 10.79 -39.33 -0.42 -2.01 16 12 C 0.10 1.24 7.12 -82.05 -0.58 0.65 16 13 C 0.24 2.99 8.21 -156.24 -1.28 1.71 16 14 N -0.27 -3.64 12.54 32.08 0.40 -3.24 16 15 N -0.04 -0.47 13.46 60.35 0.81 0.35 16 16 N -0.23 -1.73 7.90 60.35 0.48 -1.25 16 17 H 0.48 1.16 8.96 -340.34 -3.05 -1.89 16 18 N -0.28 -2.82 12.39 32.10 0.40 -2.42 16 19 N -0.51 -6.61 6.03 -5.80 -0.03 -6.64 16 20 H 0.43 5.46 8.17 -40.82 -0.33 5.13 16 21 C -0.12 -2.05 5.58 -26.69 -0.15 -2.20 16 22 C -0.13 -2.44 5.91 -26.83 -0.16 -2.60 16 23 C 0.15 3.25 4.68 -3.93 -0.02 3.23 16 24 N -0.59 -13.13 2.51 -165.04 -0.41 -13.55 16 25 C -0.36 -8.82 8.53 -15.06 -0.13 -8.95 16 26 H 0.06 1.54 6.23 -52.48 -0.33 1.22 16 27 C -0.02 -0.48 4.66 -17.43 -0.08 -0.56 16 28 N -0.91 -25.93 12.43 55.49 0.69 -25.25 16 29 Si 1.06 24.23 29.99 -169.99 -5.10 19.13 16 30 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 31 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 32 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 33 H 0.05 0.93 6.42 -51.93 -0.33 0.60 16 34 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 1.26 7.61 -51.93 -0.39 0.87 16 36 H 0.40 6.69 6.88 -40.82 -0.28 6.41 16 37 H 0.16 1.74 8.06 -52.49 -0.42 1.31 16 38 H 0.15 1.34 8.06 -52.49 -0.42 0.92 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.05 1.02 7.53 -51.93 -0.39 0.63 16 43 H 0.08 1.96 6.32 -51.93 -0.33 1.64 16 44 H 0.02 0.37 7.88 -51.93 -0.41 -0.04 16 45 H 0.27 7.76 6.77 -40.82 -0.28 7.48 16 LS Contribution 369.87 15.07 5.57 5.57 Total: -1.00 -31.37 369.87 -9.58 -40.95 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: -8.27 Total: 8.80 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: -4.01 Total: -1.14 kcal Atomic # 7 Polarization: -65.62 SS G_CDS: 2.14 Total: -63.48 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.09 Total: -9.84 kcal Atomic # 14 Polarization: 24.23 SS G_CDS: -5.10 Total: 19.13 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.37 -9.58 -40.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590171063.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.717 kcal (2) G-P(sol) polarization free energy of solvation -31.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 161.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 151.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds