Wall clock time and date at job start Wed Apr 1 2020 02:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.58821 * 2 1 4 4 C 1.53190 * 109.70508 * 120.35433 * 2 1 3 5 5 H 1.08992 * 109.50270 * 294.44706 * 4 2 1 6 6 N 1.46511 * 109.49416 * 54.51204 * 4 2 1 7 7 C 1.34771 * 119.99655 * 204.99913 * 6 4 2 8 8 O 1.21713 * 120.00480 * 359.97438 * 7 6 4 9 9 C 1.46615 * 119.99694 * 179.97438 * 7 6 4 10 10 C 1.38034 * 126.00587 * 179.69292 * 9 7 6 11 11 C 1.39395 * 107.42407 * 179.84450 * 10 9 7 12 12 C 1.37753 * 107.65416 * 0.42025 * 11 10 9 13 13 C 1.47917 * 125.82026 * 179.74567 * 12 11 10 14 14 N 1.34203 * 126.70432 * 179.68132 * 13 12 11 15 15 N 1.28985 * 107.25348 * 179.88700 * 14 13 12 16 16 N 1.28722 * 108.99266 * 0.37817 * 15 14 13 17 17 H 0.96998 * 125.31928 * 179.71868 * 16 15 14 18 18 N 1.28869 * 109.36650 * 359.75912 * 16 15 14 19 19 N 1.36388 * 108.36308 * 359.73609 * 12 11 10 20 20 H 0.96999 * 125.71485 * 179.97438 * 19 12 11 21 21 C 1.53040 * 109.31492 * 174.49064 * 4 2 1 22 22 C 1.53038 * 109.53828 * 298.64023 * 21 4 2 23 23 C 1.52766 * 109.38434 * 61.23830 * 22 21 4 24 24 N 1.46922 * 109.58706 * 239.72026 * 2 1 3 25 25 C 1.36928 * 120.63248 * 6.43715 * 24 2 1 26 26 H 1.08007 * 119.99895 * 332.62233 * 25 24 2 27 27 C 1.38813 * 120.00205 * 152.61834 * 25 24 2 28 28 N 1.31614 * 120.00178 * 334.22527 * 27 25 24 29 29 Si 1.86804 * 120.00038 * 154.22668 * 27 25 24 30 30 H 1.48498 * 109.47004 * 270.00320 * 29 27 25 31 31 H 1.48502 * 109.47258 * 30.00100 * 29 27 25 32 32 H 1.48496 * 109.47424 * 150.00230 * 29 27 25 33 33 H 1.08994 * 109.47202 * 180.28067 * 1 2 3 34 34 H 1.09003 * 109.47062 * 300.28169 * 1 2 3 35 35 H 1.09000 * 109.47146 * 60.27907 * 1 2 3 36 36 H 0.97001 * 120.00001 * 24.99379 * 6 4 2 37 37 H 1.07996 * 126.28799 * 359.97438 * 10 9 7 38 38 H 1.07997 * 126.17166 * 180.12115 * 11 10 9 39 39 H 1.09000 * 109.45827 * 58.66095 * 21 4 2 40 40 H 1.09000 * 109.46323 * 178.63644 * 21 4 2 41 41 H 1.09000 * 109.49787 * 181.31657 * 22 21 4 42 42 H 1.09000 * 109.50018 * 301.37948 * 22 21 4 43 43 H 1.08998 * 109.50941 * 185.70314 * 23 22 21 44 44 H 1.08997 * 109.42694 * 65.42523 * 23 22 21 45 45 H 0.96996 * 119.99637 * 354.53076 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0465 -0.7288 1.2445 5 1 1.7689 -0.1673 2.1364 6 7 1.4565 -2.0684 1.3067 7 6 1.3363 -2.6973 2.4926 8 8 1.7181 -2.1526 3.5119 9 6 0.7453 -4.0377 2.5549 10 6 0.5685 -4.7943 3.6958 11 6 -0.0271 -5.9948 3.3123 12 6 -0.1965 -5.9593 1.9457 13 6 -0.7890 -7.0330 1.1186 14 7 -0.9679 -7.0149 -0.2113 15 7 -1.5097 -8.1384 -0.5398 16 7 -1.6818 -8.8466 0.5213 17 1 -2.0754 -9.7327 0.5463 18 7 -1.2502 -8.1940 1.5452 19 7 0.2749 -4.7652 1.4852 20 1 0.2784 -4.4770 0.5590 21 6 3.5706 -0.8443 1.1674 22 6 3.9602 -1.6607 -0.0671 23 6 3.4647 -0.9473 -1.3238 24 7 2.0225 -0.6979 -1.1954 25 6 1.1534 -1.1132 -2.1685 26 1 0.1294 -1.3448 -1.9150 27 6 1.5883 -1.2364 -3.4810 28 7 2.6045 -0.5171 -3.9078 29 14 0.7313 -2.4232 -4.6415 30 1 1.3861 -3.7536 -4.5613 31 1 -0.6966 -2.5502 -4.2540 32 1 0.8231 -1.9093 -6.0317 33 1 -0.3633 -1.0276 0.0050 34 1 -0.3633 0.5182 0.8875 35 1 -0.3633 0.5095 -0.8925 36 1 1.1524 -2.5026 0.4943 37 1 0.8395 -4.5078 4.7011 38 1 -0.3012 -6.8083 3.9676 39 1 4.0071 0.1519 1.0965 40 1 3.9430 -1.3411 2.0633 41 1 5.0446 -1.7624 -0.1086 42 1 3.5041 -2.6490 -0.0085 43 1 3.6510 -1.5744 -2.1957 44 1 3.9912 0.0007 -1.4338 45 1 2.9987 0.1556 -3.3309 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001590171063.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:19 Heat of formation + Delta-G solvation = 130.526244 kcal Electronic energy + Delta-G solvation = -30853.158812 eV Core-core repulsion = 26716.035961 eV Total energy + Delta-G solvation = -4137.122851 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -45.52739 -42.37535 -40.86885 -39.11592 -35.90177 -35.45267 -34.51999 -34.15612 -33.53745 -32.19180 -31.27966 -30.06860 -27.97470 -26.79959 -25.81844 -25.63984 -23.94128 -23.01184 -22.57220 -21.70453 -21.05685 -20.58400 -20.34918 -19.57399 -18.88936 -18.23094 -17.32853 -16.87950 -16.50878 -16.24604 -15.91795 -15.51586 -15.44845 -15.37639 -15.26513 -14.94032 -14.63978 -14.57645 -14.26662 -13.93237 -13.79053 -13.41959 -13.23739 -13.15268 -12.80053 -12.74685 -12.56598 -12.50429 -12.30381 -12.28065 -12.03645 -11.91732 -11.84897 -11.75154 -11.52888 -11.21208 -10.98615 -10.42114 -10.16030 -10.08065 -9.18979 -8.87147 -8.15350 -5.31010 -0.25884 0.14251 0.90658 1.21534 1.61895 1.66310 1.81741 1.84762 1.89980 2.15704 2.32197 2.61956 2.66984 3.16936 3.27045 3.46300 3.74900 3.94003 3.97523 4.04209 4.09138 4.22073 4.26428 4.28083 4.38543 4.44974 4.55667 4.61994 4.85001 4.87381 4.89150 4.92602 5.02764 5.09010 5.13339 5.23069 5.30705 5.36017 5.38498 5.48104 5.57047 5.59925 5.77137 5.96803 6.09256 6.47141 6.53298 7.02537 7.08816 7.12177 7.84366 8.29006 9.10079 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.008905 B = 0.004264 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3143.520407 B = 6564.456510 C = 8976.400615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.158 3.842 3 H 0.035 0.965 4 C 0.144 3.856 5 H 0.088 0.912 6 N -0.698 5.698 7 C 0.586 3.414 8 O -0.563 6.563 9 C -0.031 4.031 10 C -0.110 4.110 11 C -0.134 4.134 12 C 0.099 3.901 13 C 0.230 3.770 14 N -0.304 5.304 15 N -0.053 5.053 16 N -0.193 5.193 17 H 0.497 0.503 18 N -0.271 5.271 19 N -0.513 5.513 20 H 0.426 0.574 21 C -0.115 4.115 22 C -0.122 4.122 23 C 0.158 3.842 24 N -0.604 5.604 25 C -0.337 4.337 26 H 0.067 0.933 27 C -0.072 4.072 28 N -0.947 5.947 29 Si 1.102 2.898 30 H -0.289 1.289 31 H -0.272 1.272 32 H -0.303 1.303 33 H 0.051 0.949 34 H 0.066 0.934 35 H 0.044 0.956 36 H 0.403 0.597 37 H 0.168 0.832 38 H 0.180 0.820 39 H 0.072 0.928 40 H 0.062 0.938 41 H 0.066 0.934 42 H 0.050 0.950 43 H 0.045 0.955 44 H 0.003 0.997 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.311 -15.078 14.233 21.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.052 3.948 3 H 0.052 0.948 4 C 0.037 3.963 5 H 0.106 0.894 6 N -0.347 5.347 7 C 0.374 3.626 8 O -0.442 6.442 9 C -0.148 4.148 10 C -0.136 4.136 11 C -0.161 4.161 12 C -0.021 4.021 13 C -0.050 4.050 14 N -0.177 5.177 15 N -0.048 5.048 16 N -0.045 5.045 17 H 0.357 0.643 18 N -0.124 5.124 19 N -0.110 5.110 20 H 0.265 0.735 21 C -0.154 4.154 22 C -0.161 4.161 23 C 0.032 3.968 24 N -0.329 5.329 25 C -0.467 4.467 26 H 0.085 0.915 27 C -0.269 4.269 28 N -0.590 5.590 29 Si 0.930 3.070 30 H -0.216 1.216 31 H -0.197 1.197 32 H -0.230 1.230 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.063 0.937 36 H 0.238 0.762 37 H 0.186 0.814 38 H 0.197 0.803 39 H 0.091 0.909 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.069 0.931 43 H 0.064 0.936 44 H 0.021 0.979 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.241 -15.498 12.638 21.269 hybrid contribution 0.017 0.649 0.435 0.781 sum -7.224 -14.849 13.073 21.061 Atomic orbital electron populations 1.21675 0.94357 1.01466 1.00790 1.20847 0.94452 0.93485 0.86060 0.94755 1.21384 0.93001 0.82991 0.98882 0.89382 1.45884 1.61604 1.18523 1.08700 1.17198 0.78103 0.83756 0.83564 1.90799 1.51818 1.66725 1.34874 1.20561 1.11189 0.94579 0.88483 1.21456 1.01257 0.93115 0.97819 1.21363 1.03879 0.99759 0.91124 1.17118 1.07547 0.85406 0.91982 1.22537 1.01244 0.92769 0.88488 1.76249 1.16341 1.13164 1.11953 1.78883 1.13381 0.98659 1.13827 1.47838 1.37715 1.18659 1.00273 0.64259 1.74936 1.16591 1.05773 1.15134 1.41984 1.45944 1.13056 1.10011 0.73490 1.21734 0.95289 1.00775 0.97598 1.21780 0.99991 0.98908 0.95383 1.20712 0.84073 0.95945 0.96088 1.44409 1.02574 1.65952 1.19944 1.20177 0.95631 1.41996 0.88895 0.91543 1.26783 1.00506 1.02251 0.97320 1.70852 1.28405 1.21585 1.38135 0.82982 0.75354 0.74633 0.74066 1.21612 1.19715 1.22994 0.92953 0.91520 0.93718 0.76164 0.81428 0.80259 0.90941 0.91928 0.91531 0.93105 0.93637 0.97881 0.93476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.35 7.73 71.98 0.56 -3.79 16 2 C 0.16 5.90 3.19 44.97 0.14 6.04 16 3 H 0.03 1.34 8.14 -2.38 -0.02 1.32 16 4 C 0.14 4.71 2.33 45.07 0.10 4.82 16 5 H 0.09 2.83 7.57 -2.39 -0.02 2.81 16 6 N -0.70 -21.83 3.46 -446.17 -1.54 -23.37 16 7 C 0.59 18.13 7.75 86.43 0.67 18.80 16 8 O -0.56 -19.99 16.54 -4.39 -0.07 -20.07 16 9 C -0.03 -0.83 7.04 40.37 0.28 -0.54 16 10 C -0.11 -2.47 10.60 22.50 0.24 -2.23 16 11 C -0.13 -2.60 10.79 22.43 0.24 -2.36 16 12 C 0.10 2.27 7.12 40.89 0.29 2.56 16 13 C 0.23 5.21 8.21 137.11 1.13 6.33 16 14 N -0.30 -7.82 12.54 -52.40 -0.66 -8.48 16 15 N -0.05 -1.08 13.46 37.02 0.50 -0.58 16 16 N -0.19 -2.44 7.90 37.02 0.29 -2.15 16 17 H 0.50 0.91 8.96 -347.51 -3.11 -2.20 16 18 N -0.27 -4.69 12.39 -52.35 -0.65 -5.33 16 19 N -0.51 -12.70 6.03 -172.27 -1.04 -13.74 16 20 H 0.43 10.68 8.17 -92.71 -0.76 9.92 16 21 C -0.12 -3.73 5.58 30.62 0.17 -3.56 16 22 C -0.12 -4.34 5.91 30.53 0.18 -4.16 16 23 C 0.16 6.97 4.68 86.22 0.40 7.38 16 24 N -0.60 -26.91 2.51 -676.06 -1.70 -28.61 16 25 C -0.34 -16.81 8.53 84.04 0.72 -16.09 16 26 H 0.07 3.24 6.23 -2.91 -0.02 3.22 16 27 C -0.07 -3.84 4.66 84.86 0.40 -3.44 16 28 N -0.95 -55.61 12.43 21.65 0.27 -55.34 16 29 Si 1.10 49.60 29.99 68.60 2.06 51.65 16 30 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 31 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 32 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 33 H 0.05 1.80 6.42 -2.39 -0.02 1.79 16 34 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.04 1.71 7.61 -2.39 -0.02 1.70 16 36 H 0.40 13.06 6.88 -92.71 -0.64 12.42 16 37 H 0.17 3.32 8.06 -2.91 -0.02 3.29 16 38 H 0.18 2.46 8.06 -2.91 -0.02 2.44 16 39 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 40 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 42 H 0.05 1.86 7.53 -2.39 -0.02 1.84 16 43 H 0.05 2.33 6.32 -2.39 -0.02 2.31 16 44 H 0.00 0.15 7.88 -2.39 -0.02 0.13 16 45 H 0.26 15.27 6.77 -92.71 -0.63 14.64 16 Total: -1.00 -68.05 369.87 -0.30 -68.35 By element: Atomic # 1 Polarization: 31.20 SS G_CDS: -3.28 Total: 27.92 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: 5.52 Total: 9.75 kcal Atomic # 7 Polarization: -133.08 SS G_CDS: -4.53 Total: -137.61 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: -0.07 Total: -20.07 kcal Atomic # 14 Polarization: 49.60 SS G_CDS: 2.06 Total: 51.65 kcal Total: -68.05 -0.30 -68.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590171063.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 198.880 kcal (2) G-P(sol) polarization free energy of solvation -68.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds