Wall clock time and date at job start Wed Apr 1 2020 02:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.70112 * 2 1 4 4 C 1.53187 * 109.58768 * 239.63923 * 2 1 3 5 5 C 1.53043 * 109.31188 * 294.85208 * 4 2 1 6 6 H 1.08993 * 109.46241 * 58.64157 * 5 4 2 7 7 N 1.46501 * 109.45839 * 178.61136 * 5 4 2 8 8 C 1.34780 * 120.00150 * 204.99591 * 7 5 4 9 9 O 1.21709 * 119.99852 * 0.02562 * 8 7 5 10 10 C 1.46601 * 120.00157 * 180.02562 * 8 7 5 11 11 C 1.38030 * 126.00919 * 179.69265 * 10 8 7 12 12 C 1.39395 * 107.42793 * 179.84278 * 11 10 8 13 13 C 1.37755 * 107.65410 * 0.42056 * 12 11 10 14 14 C 1.47916 * 125.81808 * 179.74054 * 13 12 11 15 15 N 1.34210 * 126.70254 * 180.02562 * 14 13 12 16 16 N 1.28974 * 107.25019 * 179.97438 * 15 14 13 17 17 N 1.28719 * 109.00101 * 0.02562 * 16 15 14 18 18 H 0.97000 * 125.32010 * 179.97438 * 17 16 15 19 19 N 1.28878 * 109.36146 * 359.74468 * 17 16 15 20 20 N 1.36390 * 108.35978 * 359.74075 * 13 12 11 21 21 H 0.97001 * 125.70873 * 180.02562 * 20 13 12 22 22 C 1.53038 * 109.53681 * 298.63071 * 5 4 2 23 23 C 1.52765 * 109.38187 * 61.24188 * 22 5 4 24 24 N 1.46918 * 109.00689 * 305.58604 * 23 22 5 25 25 C 1.36940 * 120.63193 * 233.58122 * 24 23 22 26 26 H 1.08005 * 119.99910 * 151.68252 * 25 24 23 27 27 C 1.38811 * 119.99865 * 331.68246 * 25 24 23 28 28 N 1.31624 * 119.99873 * 143.87116 * 27 25 24 29 29 Si 1.86802 * 119.99921 * 323.87009 * 27 25 24 30 30 H 1.48505 * 109.47069 * 274.50577 * 29 27 25 31 31 H 1.48494 * 109.47224 * 34.50706 * 29 27 25 32 32 H 1.48500 * 109.47100 * 154.50884 * 29 27 25 33 33 H 1.09000 * 109.47011 * 299.64957 * 1 2 3 34 34 H 1.09003 * 109.46869 * 59.64573 * 1 2 3 35 35 H 1.08999 * 109.47118 * 179.64840 * 1 2 3 36 36 H 1.09005 * 109.49789 * 54.79901 * 4 2 1 37 37 H 1.09003 * 109.49960 * 174.89675 * 4 2 1 38 38 H 0.97010 * 120.00027 * 25.00134 * 7 5 4 39 39 H 1.07998 * 126.28480 * 359.97438 * 11 10 8 40 40 H 1.07999 * 126.17338 * 180.17836 * 12 11 10 41 41 H 1.09004 * 109.49917 * 181.31798 * 22 5 4 42 42 H 1.09008 * 109.50015 * 301.41615 * 22 5 4 43 43 H 1.09004 * 109.50731 * 185.70517 * 23 22 5 44 44 H 1.08995 * 109.42853 * 65.42771 * 23 22 5 45 45 H 0.96996 * 119.99472 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7295 -1.2453 5 6 1.6414 -2.2042 -1.1699 6 1 0.5565 -2.2815 -1.0989 7 7 2.1022 -2.8979 -2.3751 8 6 1.4749 -4.0162 -2.7905 9 8 0.5253 -4.4494 -2.1645 10 6 1.9365 -4.7108 -3.9962 11 6 1.3926 -5.8629 -4.5274 12 6 2.1243 -6.1815 -5.6703 13 6 3.1079 -5.2281 -5.8159 14 6 4.1175 -5.1839 -6.8961 15 7 5.0828 -4.2651 -7.0547 16 7 5.7464 -4.5863 -8.1130 17 7 5.2395 -5.6569 -8.6166 18 1 5.5565 -6.1050 -9.4164 19 7 4.2482 -6.0434 -7.8894 20 7 2.9922 -4.3319 -4.7943 21 1 3.5587 -3.5572 -4.6539 22 6 2.2799 -2.8464 0.0637 23 6 1.7740 -2.1420 1.3213 24 7 2.0225 -0.6995 1.1946 25 6 2.7052 -0.0209 2.1686 26 1 3.2754 0.8604 1.9142 27 6 2.6643 -0.4657 3.4829 28 7 3.7315 -0.3620 4.2462 29 14 1.0947 -1.2115 4.1681 30 1 0.2093 -0.1289 4.6678 31 1 0.3968 -1.9668 3.0969 32 1 1.4300 -2.1315 5.2845 33 1 -0.3633 0.5084 0.8931 34 1 -0.3633 0.5193 -0.8868 35 1 -0.3633 -1.0276 -0.0063 36 1 1.6075 -0.2786 -2.1368 37 1 3.1298 -0.6504 -1.2912 38 1 2.8590 -2.5525 -2.8742 39 1 0.5530 -6.4148 -4.1315 40 1 1.9535 -7.0258 -6.3217 41 1 2.0122 -3.9023 0.1040 42 1 3.3640 -2.7475 0.0055 43 1 2.3024 -2.5287 2.1927 44 1 0.7043 -2.3203 1.4312 45 1 3.7030 -0.6732 5.1645 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001590203608.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:56 Heat of formation + Delta-G solvation = 134.792100 kcal Electronic energy + Delta-G solvation = -29597.421646 eV Core-core repulsion = 25460.483776 eV Total energy + Delta-G solvation = -4136.937870 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -45.52342 -42.37904 -40.75087 -39.28519 -36.12789 -35.44137 -34.53953 -34.34903 -32.85316 -32.40759 -31.83036 -30.24002 -28.53608 -26.29253 -25.73119 -25.48422 -24.24600 -23.71062 -22.60676 -21.53751 -21.16062 -20.71305 -20.19880 -19.42467 -18.62207 -18.22536 -17.58549 -17.19227 -16.58007 -16.33772 -15.98552 -15.46954 -15.33863 -15.26236 -15.11086 -14.92511 -14.68508 -14.55908 -14.30827 -14.03236 -13.90964 -13.87812 -13.62223 -13.16423 -13.00375 -12.71491 -12.55625 -12.49590 -12.41269 -12.28377 -12.14746 -12.04254 -12.02031 -11.66917 -11.39737 -11.30979 -11.01287 -10.48422 -10.17724 -10.12774 -9.19856 -8.92273 -8.21502 -5.36722 -0.26549 0.14118 0.89191 1.20323 1.37444 1.46368 1.52490 1.82327 1.89368 2.05746 2.29757 2.48079 2.62398 2.95077 3.17211 3.40064 3.69682 3.85880 3.99469 4.04716 4.20395 4.24192 4.28143 4.33640 4.39613 4.46359 4.61402 4.68021 4.77396 4.83701 4.91219 4.98138 5.05718 5.10602 5.14021 5.16589 5.27432 5.31460 5.41615 5.51981 5.56880 5.62146 5.73702 5.91753 6.14088 6.16486 6.49018 6.97483 7.02553 7.09611 7.69229 8.12904 8.96749 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.019601 B = 0.002219 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.139063 B =12614.518683 C =13091.744329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.161 3.839 3 H 0.071 0.929 4 C -0.122 4.122 5 C 0.161 3.839 6 H 0.080 0.920 7 N -0.710 5.710 8 C 0.587 3.413 9 O -0.562 6.562 10 C -0.027 4.027 11 C -0.115 4.115 12 C -0.137 4.137 13 C 0.104 3.896 14 C 0.231 3.769 15 N -0.299 5.299 16 N -0.051 5.051 17 N -0.194 5.194 18 H 0.497 0.503 19 N -0.275 5.275 20 N -0.507 5.507 21 H 0.432 0.568 22 C -0.134 4.134 23 C 0.146 3.854 24 N -0.603 5.603 25 C -0.253 4.253 26 H 0.054 0.946 27 C -0.012 4.012 28 N -0.931 5.931 29 Si 0.886 3.114 30 H -0.298 1.298 31 H -0.232 1.232 32 H -0.305 1.305 33 H 0.037 0.963 34 H 0.079 0.921 35 H 0.046 0.954 36 H 0.096 0.904 37 H 0.069 0.931 38 H 0.408 0.592 39 H 0.162 0.838 40 H 0.176 0.824 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.041 0.959 44 H 0.030 0.970 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.187 -12.003 -30.568 32.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.055 3.945 3 H 0.089 0.911 4 C -0.161 4.161 5 C 0.056 3.944 6 H 0.098 0.902 7 N -0.360 5.360 8 C 0.375 3.625 9 O -0.440 6.440 10 C -0.144 4.144 11 C -0.141 4.141 12 C -0.165 4.165 13 C -0.016 4.016 14 C -0.049 4.049 15 N -0.172 5.172 16 N -0.046 5.046 17 N -0.046 5.046 18 H 0.357 0.643 19 N -0.129 5.129 20 N -0.104 5.104 21 H 0.272 0.728 22 C -0.175 4.175 23 C 0.020 3.980 24 N -0.326 5.326 25 C -0.382 4.382 26 H 0.071 0.929 27 C -0.210 4.210 28 N -0.574 5.574 29 Si 0.714 3.286 30 H -0.226 1.226 31 H -0.156 1.156 32 H -0.233 1.233 33 H 0.056 0.944 34 H 0.098 0.902 35 H 0.065 0.935 36 H 0.114 0.886 37 H 0.088 0.912 38 H 0.243 0.757 39 H 0.179 0.821 40 H 0.193 0.807 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.059 0.941 44 H 0.048 0.952 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.143 -11.875 -30.246 32.494 hybrid contribution 0.042 -0.032 0.957 0.959 sum -0.101 -11.907 -29.289 31.617 Atomic orbital electron populations 1.22260 0.97033 1.01207 1.01526 1.20743 0.92799 0.95596 0.85354 0.91080 1.22153 1.01885 0.92957 0.99084 1.20819 0.99140 0.91742 0.82663 0.90167 1.45958 1.34903 1.26689 1.28472 1.17233 0.82276 0.80169 0.82828 1.90857 1.29302 1.66692 1.57174 1.20383 0.95840 1.01499 0.96641 1.21465 1.01522 0.95096 0.96019 1.21354 0.95222 1.00431 0.99494 1.17011 0.98353 0.95883 0.90337 1.22481 0.96408 0.90593 0.95417 1.76169 1.06343 1.23890 1.10789 1.78859 1.19213 1.01809 1.04723 1.47841 1.17552 1.16718 1.22515 0.64294 1.74971 1.08485 1.24006 1.05402 1.41807 1.25495 1.23310 1.19809 0.72820 1.22229 1.00647 0.98946 0.95645 1.21171 0.97215 0.83769 0.95861 1.44538 1.64702 1.03016 1.20366 1.18696 1.21224 1.11145 0.87113 0.92880 1.25716 0.98690 0.99755 0.96800 1.70179 1.27961 1.50286 1.09021 0.86842 0.84689 0.78042 0.79058 1.22626 1.15606 1.23278 0.94401 0.90196 0.93536 0.88570 0.91241 0.75654 0.82059 0.80695 0.92349 0.92194 0.94056 0.95210 0.93103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.10 9.03 71.98 0.65 -4.45 16 2 C 0.16 5.65 3.29 44.97 0.15 5.80 16 3 H 0.07 2.55 7.93 -2.39 -0.02 2.53 16 4 C -0.12 -3.29 5.02 30.67 0.15 -3.13 16 5 C 0.16 4.63 2.21 45.02 0.10 4.73 16 6 H 0.08 2.56 5.92 -2.39 -0.01 2.55 16 7 N -0.71 -16.21 5.07 -446.44 -2.26 -18.47 16 8 C 0.59 15.17 7.75 86.42 0.67 15.84 16 9 O -0.56 -18.98 16.54 -4.38 -0.07 -19.06 16 10 C -0.03 -0.54 7.04 40.36 0.28 -0.26 16 11 C -0.11 -2.15 10.60 22.50 0.24 -1.91 16 12 C -0.14 -2.11 10.79 22.43 0.24 -1.86 16 13 C 0.10 1.72 7.12 40.89 0.29 2.01 16 14 C 0.23 3.76 8.21 137.11 1.13 4.88 16 15 N -0.30 -5.32 12.54 -52.40 -0.66 -5.98 16 16 N -0.05 -0.71 13.46 37.02 0.50 -0.22 16 17 N -0.19 -1.48 7.90 37.02 0.29 -1.19 16 18 H 0.50 -1.24 8.96 -347.51 -3.11 -4.36 16 19 N -0.28 -3.44 12.39 -52.35 -0.65 -4.09 16 20 N -0.51 -8.16 6.03 -172.29 -1.04 -9.20 16 21 H 0.43 5.38 8.17 -92.71 -0.76 4.63 16 22 C -0.13 -4.73 5.63 30.53 0.17 -4.56 16 23 C 0.15 6.25 3.90 86.22 0.34 6.59 16 24 N -0.60 -27.07 2.42 -676.05 -1.63 -28.70 16 25 C -0.25 -13.85 9.84 84.03 0.83 -13.02 16 26 H 0.05 3.14 8.06 -2.91 -0.02 3.12 16 27 C -0.01 -0.70 4.81 84.86 0.41 -0.29 16 28 N -0.93 -57.72 13.97 21.65 0.30 -57.42 16 29 Si 0.89 44.80 26.72 68.60 1.83 46.64 16 30 H -0.30 -15.29 7.11 99.48 0.71 -14.58 16 31 H -0.23 -10.87 4.66 99.48 0.46 -10.41 16 32 H -0.31 -15.75 7.11 99.48 0.71 -15.05 16 33 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.05 1.50 5.74 -2.39 -0.01 1.49 16 36 H 0.10 1.99 8.14 -2.38 -0.02 1.97 16 37 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.41 6.73 7.71 -92.70 -0.71 6.02 16 39 H 0.16 2.86 8.06 -2.91 -0.02 2.83 16 40 H 0.18 1.87 8.06 -2.91 -0.02 1.84 16 41 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 42 H 0.06 2.15 8.14 -2.38 -0.02 2.13 16 43 H 0.04 1.98 5.86 -2.38 -0.01 1.97 16 44 H 0.03 1.30 6.00 -2.39 -0.01 1.28 16 45 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -75.99 368.78 -1.48 -77.48 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -3.74 Total: 9.84 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: 5.65 Total: 10.37 kcal Atomic # 7 Polarization: -120.11 SS G_CDS: -5.15 Total: -125.26 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: -0.07 Total: -19.06 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 1.83 Total: 46.64 kcal Total: -75.99 -1.48 -77.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590203608.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 212.270 kcal (2) G-P(sol) polarization free energy of solvation -75.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds