Wall clock time and date at job start Wed Apr 1 2020 02:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09005 * 109.58512 * 2 1 4 4 C 1.53185 * 109.59194 * 120.28495 * 2 1 3 5 5 C 1.53031 * 109.31745 * 174.56258 * 4 2 1 6 6 C 1.53040 * 109.53903 * 298.63651 * 5 4 2 7 7 H 1.08996 * 109.49540 * 301.41079 * 6 5 4 8 8 N 1.46504 * 109.49883 * 181.31441 * 6 5 4 9 9 C 1.34775 * 120.00114 * 154.99700 * 8 6 5 10 10 O 1.21708 * 119.99994 * 0.02562 * 9 8 6 11 11 C 1.46602 * 119.99866 * 179.97438 * 9 8 6 12 12 C 1.38038 * 126.00538 * 179.69414 * 11 9 8 13 13 C 1.39399 * 107.42750 * 179.84644 * 12 11 9 14 14 C 1.37751 * 107.65103 * 0.41882 * 13 12 11 15 15 C 1.47914 * 125.82051 * 179.74184 * 14 13 12 16 16 N 1.34210 * 126.70642 * 180.02562 * 15 14 13 17 17 N 1.28982 * 107.24735 * 179.97438 * 16 15 14 18 18 N 1.28719 * 109.00163 * 359.97438 * 17 16 15 19 19 H 0.96996 * 125.31485 * 180.02562 * 18 17 16 20 20 N 1.28863 * 109.36364 * 359.72600 * 18 17 16 21 21 N 1.36394 * 108.36305 * 359.73878 * 14 13 12 22 22 H 0.96993 * 125.71069 * 179.97438 * 21 14 13 23 23 C 1.53188 * 109.31254 * 61.36477 * 6 5 4 24 24 N 1.46923 * 108.77476 * 305.36346 * 23 6 5 25 25 C 1.36940 * 120.63187 * 233.62740 * 24 23 6 26 26 H 1.08004 * 119.99750 * 150.88317 * 25 24 23 27 27 C 1.38807 * 120.00313 * 330.89013 * 25 24 23 28 28 N 1.31618 * 120.00261 * 160.72765 * 27 25 24 29 29 Si 1.86804 * 119.99714 * 340.72628 * 27 25 24 30 30 H 1.48498 * 109.46932 * 92.33603 * 29 27 25 31 31 H 1.48497 * 109.46797 * 212.33544 * 29 27 25 32 32 H 1.48502 * 109.47149 * 332.33574 * 29 27 25 33 33 H 1.08999 * 109.47311 * 299.99831 * 1 2 3 34 34 H 1.09009 * 109.47278 * 59.99908 * 1 2 3 35 35 H 1.08999 * 109.47423 * 179.97438 * 1 2 3 36 36 H 1.09003 * 109.49763 * 294.52074 * 4 2 1 37 37 H 1.09007 * 109.49387 * 54.61173 * 4 2 1 38 38 H 1.08999 * 109.46021 * 58.65846 * 5 4 2 39 39 H 1.09000 * 109.46302 * 178.61417 * 5 4 2 40 40 H 0.97004 * 120.00012 * 335.00221 * 8 6 5 41 41 H 1.07997 * 126.28637 * 359.96653 * 12 11 9 42 42 H 1.07996 * 126.17559 * 180.17940 * 13 12 11 43 43 H 1.08999 * 109.58759 * 65.15182 * 23 6 5 44 44 H 1.08998 * 109.58904 * 185.43533 * 23 6 5 45 45 H 0.96999 * 120.00064 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0436 -0.7278 1.2462 5 6 3.5678 -0.8434 1.1727 6 6 3.9603 -1.6608 -0.0601 7 1 3.5036 -2.6488 -0.0019 8 7 5.4180 -1.7975 -0.1124 9 6 5.9743 -2.8394 -0.7615 10 8 5.2656 -3.6666 -1.3045 11 6 7.4330 -2.9759 -0.8143 12 6 8.1310 -3.9914 -1.4362 13 6 9.4893 -3.7386 -1.2511 14 6 9.6019 -2.5810 -0.5129 15 6 10.8678 -1.9489 -0.0818 16 7 10.9982 -0.8232 0.6371 17 7 12.2611 -0.6164 0.7982 18 7 12.9176 -1.5579 0.2156 19 1 13.8842 -1.6347 0.1901 20 7 12.0900 -2.3858 -0.3230 21 7 8.3472 -2.1170 -0.2473 22 1 8.1347 -1.3162 0.2570 23 6 3.4684 -0.9435 -1.3212 24 7 2.0253 -0.6990 -1.1937 25 6 1.1584 -1.1150 -2.1687 26 1 0.1413 -1.3730 -1.9126 27 6 1.5867 -1.2053 -3.4859 28 7 0.9166 -1.9416 -4.3468 29 14 3.1142 -0.2818 -4.0367 30 1 4.3011 -1.1641 -3.9031 31 1 2.9597 0.1287 -5.4554 32 1 3.2960 0.9241 -3.1894 33 1 -0.3634 0.5138 0.8900 34 1 -0.3634 0.5139 -0.8900 35 1 -0.3634 -1.0276 -0.0005 36 1 1.7638 -0.1655 2.1371 37 1 1.6049 -1.7246 1.2920 38 1 4.0045 0.1528 1.1021 39 1 3.9381 -1.3391 2.0701 40 1 5.9828 -1.1380 0.3202 41 1 7.7034 -4.8272 -1.9700 42 1 10.3059 -4.3434 -1.6167 43 1 3.9919 0.0065 -1.4289 44 1 3.6598 -1.5672 -2.1944 45 1 1.2162 -2.0050 -5.2672 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001590234927.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:22 Heat of formation + Delta-G solvation = 159.988922 kcal Electronic energy + Delta-G solvation = -29946.977827 eV Core-core repulsion = 25811.132574 eV Total energy + Delta-G solvation = -4135.845254 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -44.88423 -41.47467 -39.38203 -37.77869 -34.79854 -34.69874 -33.80387 -32.84096 -31.61440 -30.90361 -30.67864 -29.35311 -26.36128 -25.17955 -25.03645 -24.46983 -22.86712 -22.17435 -21.08919 -20.45330 -20.17274 -19.90839 -19.40624 -18.47819 -17.59510 -16.57527 -16.25538 -15.97905 -15.24418 -14.94443 -14.74427 -14.59490 -14.16639 -14.02976 -13.98410 -13.64278 -13.48007 -13.16404 -13.05210 -12.92474 -12.46620 -12.39305 -12.13568 -11.84802 -11.71409 -11.61481 -11.49779 -11.34120 -11.27704 -10.81271 -10.72535 -10.37784 -10.26783 -10.09835 -9.86388 -9.67963 -9.38607 -9.32962 -8.94582 -8.51368 -8.32575 -6.90222 -5.88170 -3.26419 0.46349 0.86310 1.71275 1.79487 2.54769 2.69071 3.18003 3.33281 3.41204 3.42788 3.51999 3.54438 3.85323 4.59894 4.73029 4.77892 4.96525 4.99016 5.01745 5.10820 5.20241 5.21524 5.43802 5.50421 5.72446 5.73164 5.90114 5.92017 5.92767 5.99442 6.09648 6.22185 6.24471 6.33053 6.34262 6.44908 6.51514 6.54271 6.56734 6.65331 6.80884 6.93428 7.00181 7.09635 7.59359 7.67471 8.02413 8.29775 8.41712 8.98978 9.78840 10.14272 11.27378 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.014974 B = 0.002725 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.420256 B =10273.804053 C =10989.602000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.168 3.832 3 H 0.029 0.971 4 C -0.127 4.127 5 C -0.117 4.117 6 C 0.126 3.874 7 H 0.096 0.904 8 N -0.724 5.724 9 C 0.579 3.421 10 O -0.506 6.506 11 C -0.005 4.005 12 C -0.114 4.114 13 C -0.138 4.138 14 C 0.095 3.905 15 C 0.247 3.753 16 N -0.278 5.278 17 N -0.044 5.044 18 N -0.224 5.224 19 H 0.478 0.522 20 N -0.280 5.280 21 N -0.516 5.516 22 H 0.423 0.577 23 C 0.120 3.880 24 N -0.596 5.596 25 C -0.262 4.262 26 H 0.093 0.907 27 C 0.029 3.971 28 N -0.905 5.905 29 Si 0.878 3.122 30 H -0.286 1.286 31 H -0.304 1.304 32 H -0.273 1.273 33 H 0.040 0.960 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.388 0.612 41 H 0.160 0.840 42 H 0.155 0.845 43 H 0.023 0.977 44 H 0.080 0.920 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.270 0.987 12.912 25.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.062 3.938 3 H 0.047 0.953 4 C -0.167 4.167 5 C -0.155 4.155 6 C 0.021 3.979 7 H 0.114 0.886 8 N -0.375 5.375 9 C 0.364 3.636 10 O -0.380 6.380 11 C -0.123 4.123 12 C -0.139 4.139 13 C -0.166 4.166 14 C -0.024 4.024 15 C -0.033 4.033 16 N -0.151 5.151 17 N -0.039 5.039 18 N -0.071 5.071 19 H 0.332 0.668 20 N -0.132 5.132 21 N -0.113 5.113 22 H 0.262 0.738 23 C -0.006 4.006 24 N -0.321 5.321 25 C -0.390 4.390 26 H 0.110 0.890 27 C -0.170 4.170 28 N -0.548 5.548 29 Si 0.708 3.292 30 H -0.214 1.214 31 H -0.232 1.232 32 H -0.198 1.198 33 H 0.059 0.941 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.221 0.779 41 H 0.178 0.822 42 H 0.173 0.827 43 H 0.041 0.959 44 H 0.098 0.902 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 21.943 0.942 12.730 25.385 hybrid contribution 1.683 0.940 -0.227 1.941 sum 23.626 1.882 12.503 26.796 Atomic orbital electron populations 1.21807 0.95156 1.02038 1.00443 1.20510 0.93772 0.93329 0.86146 0.95289 1.22049 0.93899 1.01846 0.98907 1.21695 0.97779 0.99541 0.96521 1.21856 0.77166 1.01594 0.97259 0.88616 1.46080 1.08939 1.26526 1.55922 1.17009 0.84920 0.82175 0.79447 1.90948 1.61073 1.41666 1.44301 1.20848 0.89399 0.95497 1.06540 1.21315 0.91936 0.99073 1.01626 1.21134 0.97231 0.96102 1.02137 1.16823 0.79965 0.97799 1.07784 1.22475 0.91213 0.91688 0.97925 1.76172 1.07482 1.14854 1.16631 1.78885 0.99107 1.12140 1.13791 1.47748 1.12625 1.13685 1.33049 0.66754 1.75011 0.99731 1.18185 1.20308 1.41873 1.04409 1.22642 1.42410 0.73845 1.21696 0.85616 0.96903 0.96430 1.44360 1.01506 1.65367 1.20851 1.18891 0.95709 1.38792 0.85569 0.88981 1.25291 0.97321 0.98506 0.95888 1.69808 1.41238 1.39073 1.04677 0.87007 0.83993 0.81231 0.76922 1.21395 1.23202 1.19795 0.94094 0.91711 0.92299 0.92139 0.91484 0.92142 0.92363 0.77879 0.82220 0.82714 0.95932 0.90160 0.92774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 7.95 37.15 0.30 -2.18 16 2 C 0.17 3.20 3.49 -67.60 -0.24 2.96 16 3 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 4 C -0.13 -1.97 5.37 -26.62 -0.14 -2.11 16 5 C -0.12 -1.67 5.35 -26.69 -0.14 -1.82 16 6 C 0.13 2.24 2.60 -67.81 -0.18 2.07 16 7 H 0.10 1.95 7.58 -51.93 -0.39 1.56 16 8 N -0.72 -10.70 5.08 -55.02 -0.28 -10.98 16 9 C 0.58 9.65 7.75 -12.89 -0.10 9.55 16 10 O -0.51 -10.79 16.54 5.18 0.09 -10.71 16 11 C -0.01 -0.07 7.04 -81.95 -0.58 -0.65 16 12 C -0.11 -1.42 10.60 -39.22 -0.42 -1.83 16 13 C -0.14 -1.45 10.79 -39.33 -0.42 -1.88 16 14 C 0.10 1.02 7.12 -82.05 -0.58 0.44 16 15 C 0.25 2.53 8.21 -156.23 -1.28 1.25 16 16 N -0.28 -2.93 12.54 32.09 0.40 -2.53 16 17 N -0.04 -0.38 13.46 60.35 0.81 0.43 16 18 N -0.22 -1.31 7.90 60.35 0.48 -0.84 16 19 H 0.48 0.41 8.96 -340.34 -3.05 -2.64 16 20 N -0.28 -2.38 12.39 32.10 0.40 -1.98 16 21 N -0.52 -5.50 6.03 -5.81 -0.04 -5.54 16 22 H 0.42 3.60 8.16 -40.82 -0.33 3.26 16 23 C 0.12 2.68 3.77 -3.71 -0.01 2.66 16 24 N -0.60 -14.03 2.75 -164.78 -0.45 -14.49 16 25 C -0.26 -7.27 9.05 -15.06 -0.14 -7.41 16 26 H 0.09 2.68 6.40 -52.48 -0.34 2.34 16 27 C 0.03 0.87 5.24 -17.43 -0.09 0.78 16 28 N -0.91 -28.40 13.97 55.49 0.78 -27.63 16 29 Si 0.88 23.27 24.34 -169.99 -4.14 19.14 16 30 H -0.29 -7.64 6.63 56.52 0.37 -7.26 16 31 H -0.30 -8.16 7.11 56.52 0.40 -7.76 16 32 H -0.27 -7.00 6.63 56.52 0.37 -6.63 16 33 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.06 1.28 7.65 -51.92 -0.40 0.88 16 35 H 0.06 1.12 7.43 -51.93 -0.39 0.74 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.39 4.25 7.71 -40.82 -0.31 3.93 16 41 H 0.16 1.92 8.06 -52.49 -0.42 1.50 16 42 H 0.16 1.29 8.06 -52.49 -0.42 0.87 16 43 H 0.02 0.50 7.03 -51.93 -0.37 0.13 16 44 H 0.08 2.09 4.62 -51.93 -0.24 1.85 16 45 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 LS Contribution 368.53 15.07 5.55 5.55 Total: -1.00 -36.62 368.53 -8.82 -45.44 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -8.39 Total: 2.29 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: -4.03 Total: 1.84 kcal Atomic # 7 Polarization: -65.65 SS G_CDS: 2.10 Total: -63.55 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.09 Total: -10.71 kcal Atomic # 14 Polarization: 23.27 SS G_CDS: -4.14 Total: 19.14 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -36.62 -8.82 -45.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590234927.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 205.426 kcal (2) G-P(sol) polarization free energy of solvation -36.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 168.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 159.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds