Wall clock time and date at job start Wed Apr 1 2020 02:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.69538 * 2 1 4 4 C 1.53191 * 109.58500 * 239.64881 * 2 1 3 5 5 C 1.53048 * 109.30948 * 185.57312 * 4 2 1 6 6 C 1.53359 * 109.60522 * 61.37423 * 5 4 2 7 7 H 1.08997 * 109.67800 * 178.74590 * 6 5 4 8 8 N 1.46494 * 109.47347 * 58.54646 * 6 5 4 9 9 C 1.34784 * 119.99786 * 155.37626 * 8 6 5 10 10 O 1.21687 * 119.99853 * 359.97438 * 9 8 6 11 11 C 1.46726 * 120.00031 * 180.02562 * 9 8 6 12 12 C 1.36664 * 126.02458 * 179.71600 * 11 9 8 13 13 C 1.40800 * 107.05578 * 179.84896 * 12 11 9 14 14 C 1.48509 * 126.28803 * 180.13941 * 13 12 11 15 15 N 1.34034 * 126.66938 * 0.32164 * 14 13 12 16 16 N 1.28984 * 107.26744 * 180.02562 * 15 14 13 17 17 N 1.28731 * 108.94357 * 0.02562 * 16 15 14 18 18 H 0.96997 * 125.34286 * 180.02562 * 17 16 15 19 19 N 1.28874 * 109.31155 * 359.72381 * 17 16 15 20 20 C 1.36571 * 107.43085 * 0.40954 * 13 12 11 21 21 N 1.34845 * 108.61174 * 359.74919 * 20 13 12 22 22 H 0.96995 * 125.52203 * 179.97438 * 21 20 13 23 23 C 1.53185 * 109.14821 * 298.70912 * 6 5 4 24 24 N 1.46924 * 109.58825 * 120.35302 * 2 1 3 25 25 C 1.36932 * 120.63220 * 353.37983 * 24 2 1 26 26 H 1.07998 * 120.00257 * 29.06845 * 25 24 2 27 27 C 1.38815 * 120.00022 * 209.06619 * 25 24 2 28 28 N 1.31620 * 120.00010 * 15.04378 * 27 25 24 29 29 Si 1.86798 * 120.00070 * 195.04313 * 27 25 24 30 30 H 1.48503 * 109.47325 * 359.97438 * 29 27 25 31 31 H 1.48497 * 109.47084 * 120.00070 * 29 27 25 32 32 H 1.48498 * 109.47107 * 240.00011 * 29 27 25 33 33 H 1.09004 * 109.47399 * 299.63889 * 1 2 3 34 34 H 1.08996 * 109.47328 * 59.64426 * 1 2 3 35 35 H 1.09001 * 109.46880 * 179.64614 * 1 2 3 36 36 H 1.09004 * 109.49531 * 305.52463 * 4 2 1 37 37 H 1.08995 * 109.50257 * 65.59272 * 4 2 1 38 38 H 1.08999 * 109.45932 * 181.38026 * 5 4 2 39 39 H 1.08992 * 109.46099 * 301.35627 * 5 4 2 40 40 H 0.96995 * 120.00491 * 335.37742 * 8 6 5 41 41 H 1.08001 * 126.47344 * 359.97438 * 12 11 9 42 42 H 1.07993 * 125.69162 * 179.74205 * 20 13 12 43 43 H 1.09006 * 109.58863 * 294.72490 * 23 6 5 44 44 H 1.09000 * 109.59092 * 174.43794 * 23 6 5 45 45 H 0.96996 * 120.00153 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0435 -0.7293 -1.2455 5 6 3.5675 -0.8478 -1.1702 6 6 3.9596 -1.6672 0.0654 7 1 5.0437 -1.7712 0.1080 8 7 3.3431 -2.9938 -0.0127 9 6 3.8962 -4.0336 0.6428 10 8 4.9078 -3.8704 1.2990 11 6 3.2790 -5.3624 0.5642 12 6 3.7362 -6.4981 1.1716 13 6 2.8449 -7.5345 0.8338 14 6 2.9382 -8.9510 1.2699 15 7 3.8790 -9.4845 2.0616 16 7 3.6008 -10.7367 2.1966 17 7 2.5344 -11.0025 1.5263 18 1 2.1140 -11.8744 1.4634 19 7 2.1096 -9.9271 0.9572 20 6 1.8822 -6.9992 0.0265 21 7 2.1407 -5.6862 -0.1393 22 1 1.6108 -5.0699 -0.6685 23 6 3.4651 -0.9469 1.3236 24 7 2.0226 -0.6995 1.1945 25 6 1.1538 -1.1127 2.1689 26 1 0.1363 -1.3678 1.9124 27 6 1.5811 -1.2037 3.4866 28 7 2.7038 -0.6244 3.8559 29 14 0.5627 -2.1484 4.7355 30 1 -0.6458 -2.7010 4.0726 31 1 1.3726 -3.2599 5.2955 32 1 0.1513 -1.2347 5.8315 33 1 -0.3634 0.5082 0.8932 34 1 -0.3634 0.5193 -0.8867 35 1 -0.3633 -1.0277 -0.0063 36 1 1.6029 -1.7253 -1.2914 37 1 1.7655 -0.1671 -2.1369 38 1 3.9378 -1.3446 -2.0669 39 1 4.0061 0.1475 -1.0992 40 1 2.5369 -3.1240 -0.5360 41 1 4.6140 -6.5840 1.7949 42 1 1.0524 -7.5377 -0.4069 43 1 3.9903 0.0022 1.4316 44 1 3.6521 -1.5695 2.1985 45 1 3.0021 -0.6877 4.7766 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001590235323.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:37 Heat of formation + Delta-G solvation = 156.951122 kcal Electronic energy + Delta-G solvation = -30577.984924 eV Core-core repulsion = 26442.007941 eV Total energy + Delta-G solvation = -4135.976982 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -44.42267 -41.40036 -39.17953 -37.43105 -34.44772 -34.18033 -33.57513 -32.77064 -31.12639 -30.70070 -29.93526 -29.04926 -26.27031 -25.03588 -24.73140 -24.11119 -22.77403 -22.18951 -20.62319 -20.31856 -20.05562 -19.28536 -18.78751 -18.40174 -17.12986 -16.37717 -15.80366 -15.42512 -15.09253 -14.84163 -14.61229 -14.08925 -13.97094 -13.83886 -13.62695 -13.45418 -13.30171 -13.11641 -12.78764 -12.58945 -12.47039 -12.12864 -11.92916 -11.42538 -11.28170 -11.21031 -11.12884 -11.10524 -10.98138 -10.92094 -10.71966 -10.42174 -10.35284 -9.98121 -9.68597 -9.51243 -9.45939 -8.86816 -8.50485 -8.45610 -8.17691 -6.61815 -5.75307 -3.20142 0.98878 1.51516 1.76895 2.20165 2.96888 3.09711 3.39212 3.44963 3.49365 3.52248 3.82181 3.92617 4.22247 4.49940 4.95023 5.09651 5.26549 5.30580 5.30969 5.35277 5.44278 5.46276 5.48888 5.55843 5.89224 5.95444 6.04410 6.09719 6.12256 6.26867 6.29478 6.32460 6.38678 6.45951 6.53127 6.57289 6.63668 6.73817 6.85934 6.99926 7.06128 7.23202 7.35864 7.70042 7.82732 8.01174 8.17201 8.48377 8.68369 9.22854 9.87287 10.42819 11.32457 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.011908 B = 0.003322 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.813263 B = 8426.808336 C = 9406.592655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.164 3.836 3 H 0.025 0.975 4 C -0.129 4.129 5 C -0.119 4.119 6 C 0.119 3.881 7 H 0.079 0.921 8 N -0.699 5.699 9 C 0.586 3.414 10 O -0.528 6.528 11 C -0.031 4.031 12 C -0.070 4.070 13 C -0.123 4.123 14 C 0.268 3.732 15 N -0.269 5.269 16 N -0.055 5.055 17 N -0.235 5.235 18 H 0.472 0.528 19 N -0.311 5.311 20 C 0.074 3.926 21 N -0.526 5.526 22 H 0.423 0.577 23 C 0.160 3.840 24 N -0.582 5.582 25 C -0.254 4.254 26 H 0.067 0.933 27 C 0.009 3.991 28 N -0.896 5.896 29 Si 0.893 3.107 30 H -0.280 1.280 31 H -0.288 1.288 32 H -0.291 1.291 33 H 0.061 0.939 34 H 0.036 0.964 35 H 0.050 0.950 36 H 0.051 0.949 37 H 0.053 0.947 38 H 0.051 0.949 39 H 0.072 0.928 40 H 0.388 0.612 41 H 0.158 0.842 42 H 0.180 0.820 43 H 0.026 0.974 44 H 0.099 0.901 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.223 -13.474 -13.095 19.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.057 3.943 3 H 0.043 0.957 4 C -0.169 4.169 5 C -0.157 4.157 6 C 0.014 3.986 7 H 0.097 0.903 8 N -0.349 5.349 9 C 0.371 3.629 10 O -0.404 6.404 11 C -0.143 4.143 12 C -0.097 4.097 13 C -0.134 4.134 14 C -0.011 4.011 15 N -0.142 5.142 16 N -0.051 5.051 17 N -0.080 5.080 18 H 0.326 0.674 19 N -0.163 5.163 20 C -0.068 4.068 21 N -0.122 5.122 22 H 0.261 0.739 23 C 0.033 3.967 24 N -0.306 5.306 25 C -0.383 4.383 26 H 0.085 0.915 27 C -0.190 4.190 28 N -0.540 5.540 29 Si 0.724 3.276 30 H -0.205 1.205 31 H -0.214 1.214 32 H -0.218 1.218 33 H 0.080 0.920 34 H 0.055 0.945 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.090 0.910 40 H 0.222 0.778 41 H 0.176 0.824 42 H 0.197 0.803 43 H 0.044 0.956 44 H 0.117 0.883 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.183 -13.638 -12.183 18.417 hybrid contribution -1.754 -0.523 0.061 1.831 sum -3.937 -14.161 -12.122 19.052 Atomic orbital electron populations 1.21789 0.96154 1.01061 1.00246 1.20465 0.92835 0.93720 0.87239 0.95727 1.22060 0.95189 1.00395 0.99217 1.21754 0.96918 1.00287 0.96756 1.21881 0.97089 0.81324 0.98311 0.90281 1.45716 1.29283 1.08969 1.50882 1.16882 0.84021 0.82100 0.79852 1.90844 1.24787 1.83889 1.40881 1.20371 0.92371 0.96083 1.05471 1.20975 0.99919 0.88952 0.99849 1.16322 1.01416 0.87025 1.08646 1.22831 0.88786 0.94236 0.95278 1.76139 1.22824 0.98628 1.16584 1.78906 1.02014 1.10835 1.13297 1.47647 1.17933 1.11580 1.30862 0.67439 1.74890 1.25499 0.93790 1.22095 1.21772 1.00392 0.83710 1.00910 1.41836 1.22144 1.09173 1.39010 0.73873 1.21215 0.83702 0.97186 0.94593 1.44043 1.02714 1.64768 1.19027 1.19075 0.94620 1.38451 0.86182 0.91500 1.25040 0.97585 0.99427 0.96960 1.69974 1.23077 1.44088 1.16875 0.86375 0.79607 0.79810 0.81846 1.20503 1.21428 1.21758 0.91992 0.94463 0.93120 0.93072 0.92827 0.93036 0.90955 0.77817 0.82414 0.80255 0.95604 0.88276 0.93617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 7.94 37.16 0.30 -2.01 16 2 C 0.16 3.06 3.50 -67.60 -0.24 2.82 16 3 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 4 C -0.13 -1.89 5.21 -26.61 -0.14 -2.03 16 5 C -0.12 -1.75 5.59 -26.52 -0.15 -1.90 16 6 C 0.12 2.16 2.83 -67.65 -0.19 1.97 16 7 H 0.08 1.48 7.58 -51.93 -0.39 1.09 16 8 N -0.70 -11.63 4.92 -54.83 -0.27 -11.90 16 9 C 0.59 10.84 7.75 -12.83 -0.10 10.74 16 10 O -0.53 -11.83 16.53 5.20 0.09 -11.75 16 11 C -0.03 -0.48 7.00 -82.38 -0.58 -1.05 16 12 C -0.07 -1.10 10.56 -39.18 -0.41 -1.52 16 13 C -0.12 -1.67 6.10 -105.30 -0.64 -2.32 16 14 C 0.27 3.64 8.18 -156.30 -1.28 2.36 16 15 N -0.27 -3.93 12.54 32.16 0.40 -3.53 16 16 N -0.06 -0.66 13.47 60.35 0.81 0.15 16 17 N -0.23 -2.05 7.90 60.35 0.48 -1.57 16 18 H 0.47 1.66 8.96 -340.37 -3.05 -1.39 16 19 N -0.31 -3.44 12.39 32.18 0.40 -3.04 16 20 C 0.07 0.79 11.84 -16.83 -0.20 0.59 16 21 N -0.53 -5.89 5.95 -9.54 -0.06 -5.95 16 22 H 0.42 3.52 8.16 -40.82 -0.33 3.18 16 23 C 0.16 3.68 4.88 -3.71 -0.02 3.66 16 24 N -0.58 -13.25 2.91 -164.78 -0.48 -13.73 16 25 C -0.25 -6.49 8.60 -15.06 -0.13 -6.62 16 26 H 0.07 1.68 6.21 -52.49 -0.33 1.35 16 27 C 0.01 0.25 4.96 -17.43 -0.09 0.17 16 28 N -0.90 -26.06 11.14 55.49 0.62 -25.44 16 29 Si 0.89 21.98 29.58 -169.99 -5.03 16.96 16 30 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 31 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 32 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 33 H 0.06 1.18 7.62 -51.93 -0.40 0.79 16 34 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.05 0.86 7.45 -51.93 -0.39 0.47 16 36 H 0.05 0.71 6.41 -51.93 -0.33 0.37 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.39 5.45 5.88 -40.82 -0.24 5.21 16 41 H 0.16 2.59 8.06 -52.49 -0.42 2.17 16 42 H 0.18 1.29 8.06 -52.49 -0.42 0.86 16 43 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.10 2.73 6.06 -51.93 -0.31 2.42 16 45 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 371.18 15.07 5.59 5.59 Total: -1.00 -34.77 371.18 -9.60 -44.37 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -8.29 Total: 4.96 kcal Atomic # 6 Polarization: 8.74 SS G_CDS: -3.86 Total: 4.87 kcal Atomic # 7 Polarization: -66.91 SS G_CDS: 1.90 Total: -65.00 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.09 Total: -11.75 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.96 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.77 -9.60 -44.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590235323.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 201.323 kcal (2) G-P(sol) polarization free energy of solvation -34.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 166.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 156.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds