Wall clock time and date at job start Wed Apr 1 2020 02:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.58673 * 2 1 4 4 C 1.53191 * 109.58229 * 120.28336 * 2 1 3 5 5 C 1.53041 * 109.31394 * 174.56566 * 4 2 1 6 6 C 1.53040 * 109.53557 * 298.63509 * 5 4 2 7 7 H 1.09000 * 109.49826 * 301.40916 * 6 5 4 8 8 N 1.46498 * 109.49601 * 181.31313 * 6 5 4 9 9 C 1.34779 * 120.00097 * 155.00026 * 8 6 5 10 10 O 1.21623 * 119.99918 * 359.97438 * 9 8 6 11 11 C 1.47308 * 120.00138 * 180.02562 * 9 8 6 12 12 C 1.37825 * 126.52710 * 359.68891 * 11 9 8 13 13 N 1.34786 * 108.24973 * 179.83700 * 12 11 9 14 14 H 0.97004 * 125.36456 * 180.17482 * 13 12 11 15 15 C 1.37309 * 109.26906 * 0.43103 * 13 12 11 16 16 C 1.48007 * 125.76068 * 179.71137 * 15 13 12 17 17 N 1.34174 * 126.69342 * 180.02562 * 16 15 13 18 18 N 1.28990 * 107.24979 * 180.02562 * 17 16 15 19 19 N 1.28720 * 108.98720 * 359.97438 * 18 17 16 20 20 H 0.97001 * 125.32172 * 180.02562 * 19 18 17 21 21 N 1.28873 * 109.35570 * 359.73031 * 19 18 17 22 22 C 1.35702 * 108.47624 * 359.73537 * 15 13 12 23 23 C 1.53197 * 109.31384 * 61.36343 * 6 5 4 24 24 N 1.46921 * 109.70627 * 239.64259 * 2 1 3 25 25 C 1.36944 * 120.63036 * 6.51200 * 24 2 1 26 26 H 1.07995 * 119.99899 * 330.20373 * 25 24 2 27 27 C 1.38810 * 119.99902 * 150.20045 * 25 24 2 28 28 N 1.31620 * 119.99942 * 344.48280 * 27 25 24 29 29 Si 1.86795 * 119.99872 * 164.47877 * 27 25 24 30 30 H 1.48509 * 109.47049 * 90.00392 * 29 27 25 31 31 H 1.48497 * 109.47148 * 209.99933 * 29 27 25 32 32 H 1.48495 * 109.47222 * 330.00437 * 29 27 25 33 33 H 1.09000 * 109.47456 * 300.00245 * 1 2 3 34 34 H 1.09001 * 109.46694 * 60.00114 * 1 2 3 35 35 H 1.09003 * 109.47396 * 179.97438 * 1 2 3 36 36 H 1.09000 * 109.49925 * 294.51526 * 4 2 1 37 37 H 1.09002 * 109.49898 * 54.61022 * 4 2 1 38 38 H 1.09006 * 109.45921 * 58.65326 * 5 4 2 39 39 H 1.08993 * 109.46150 * 178.61238 * 5 4 2 40 40 H 0.96998 * 120.00367 * 334.99799 * 8 6 5 41 41 H 1.07996 * 125.87570 * 359.97438 * 12 11 9 42 42 H 1.07998 * 126.46771 * 179.97438 * 22 15 13 43 43 H 1.08996 * 109.58698 * 65.15033 * 23 6 5 44 44 H 1.08994 * 109.58664 * 185.43222 * 23 6 5 45 45 H 0.97005 * 119.99905 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0434 -0.7278 1.2464 5 6 3.5677 -0.8434 1.1731 6 6 3.9603 -1.6609 -0.0597 7 1 3.5036 -2.6489 -0.0016 8 7 5.4179 -1.7976 -0.1119 9 6 5.9743 -2.8396 -0.7609 10 8 5.2662 -3.6667 -1.3029 11 6 7.4400 -2.9773 -0.8129 12 6 8.3647 -2.1219 -0.2537 13 7 9.5967 -2.5993 -0.5203 14 1 10.4302 -2.1901 -0.2397 15 6 9.4860 -3.7530 -1.2564 16 6 10.6132 -4.5744 -1.7518 17 7 10.5269 -5.7031 -2.4721 18 7 11.7314 -6.1055 -2.6984 19 7 12.5573 -5.2816 -2.1544 20 1 13.5240 -5.3579 -2.1796 21 7 11.8993 -4.3363 -1.5764 22 6 8.1688 -4.0128 -1.4536 23 6 3.4685 -0.9436 -1.3209 24 7 2.0254 -0.6990 -1.1935 25 6 1.1585 -1.1152 -2.1685 26 1 0.1448 -1.3840 -1.9108 27 6 1.5827 -1.1915 -3.4880 28 7 2.6926 -0.5886 -3.8583 29 14 0.5786 -2.1499 -4.7379 30 1 -0.4165 -1.2471 -5.3706 31 1 1.4812 -2.7000 -5.7810 32 1 -0.1273 -3.2643 -4.0561 33 1 -0.3634 0.5139 0.8899 34 1 -0.3633 0.5138 -0.8900 35 1 -0.3634 -1.0277 -0.0005 36 1 1.7637 -0.1655 2.1372 37 1 1.6047 -1.7246 1.2922 38 1 4.0045 0.1528 1.1023 39 1 3.9379 -1.3391 2.0704 40 1 5.9827 -1.1382 0.3206 41 1 8.1407 -1.2248 0.3042 42 1 7.7536 -4.8493 -1.9960 43 1 3.9920 0.0063 -1.4286 44 1 3.6599 -1.5673 -2.1941 45 1 2.9889 -0.6416 -4.7805 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001590235647.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:59 Heat of formation + Delta-G solvation = 155.767313 kcal Electronic energy + Delta-G solvation = -29630.762202 eV Core-core repulsion = 25494.733886 eV Total energy + Delta-G solvation = -4136.028316 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -44.74705 -41.45236 -39.00081 -37.36354 -34.68714 -34.24978 -33.65882 -32.71888 -31.58632 -30.62786 -29.79807 -29.13540 -26.00079 -24.98482 -24.86421 -24.12409 -22.85006 -22.10016 -20.97575 -20.36840 -19.63350 -19.46358 -19.01464 -18.28746 -17.46504 -16.32319 -16.12723 -15.46706 -14.94059 -14.88795 -14.71394 -14.25941 -13.91988 -13.75078 -13.67936 -13.52555 -13.28321 -13.15518 -12.63125 -12.59523 -12.44285 -12.21824 -11.74866 -11.69920 -11.45625 -11.37605 -11.29447 -11.04990 -10.81433 -10.61037 -10.43049 -10.32423 -10.18059 -9.88605 -9.68149 -9.35423 -9.29082 -9.12199 -8.43590 -8.32608 -8.27787 -6.50734 -5.64887 -3.09385 0.63286 1.17604 1.86420 1.88348 2.61999 2.70550 3.40557 3.49098 3.57671 3.59593 3.78756 3.94923 4.05721 4.62812 4.77049 4.92710 4.99107 5.13247 5.29086 5.43145 5.45519 5.55882 5.64836 5.73314 5.84898 5.97570 6.01976 6.05459 6.18069 6.34165 6.37896 6.45531 6.47207 6.53548 6.60491 6.60793 6.70411 6.84102 7.04293 7.09743 7.12393 7.20191 7.43411 7.83065 7.85412 7.95570 8.11426 8.60144 8.85981 9.34303 9.98603 10.53991 11.43218 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.014406 B = 0.002523 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.158574 B =11094.823064 C =12564.650349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.165 3.835 3 H 0.024 0.976 4 C -0.126 4.126 5 C -0.116 4.116 6 C 0.118 3.882 7 H 0.082 0.918 8 N -0.719 5.719 9 C 0.582 3.418 10 O -0.530 6.530 11 C -0.211 4.211 12 C 0.068 3.932 13 N -0.526 5.526 14 H 0.423 0.577 15 C 0.050 3.950 16 C 0.258 3.742 17 N -0.255 5.255 18 N -0.044 5.044 19 N -0.228 5.228 20 H 0.475 0.525 21 N -0.313 5.313 22 C -0.057 4.057 23 C 0.169 3.831 24 N -0.583 5.583 25 C -0.253 4.253 26 H 0.069 0.931 27 C 0.007 3.993 28 N -0.899 5.899 29 Si 0.899 3.101 30 H -0.289 1.289 31 H -0.289 1.289 32 H -0.279 1.279 33 H 0.037 0.963 34 H 0.060 0.940 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.061 0.939 38 H 0.057 0.943 39 H 0.050 0.950 40 H 0.388 0.612 41 H 0.184 0.816 42 H 0.160 0.840 43 H 0.016 0.984 44 H 0.094 0.906 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.138 -1.942 11.216 23.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.059 3.941 3 H 0.041 0.959 4 C -0.166 4.166 5 C -0.154 4.154 6 C 0.013 3.987 7 H 0.101 0.899 8 N -0.369 5.369 9 C 0.368 3.632 10 O -0.407 6.407 11 C -0.221 4.221 12 C -0.072 4.072 13 N -0.121 5.121 14 H 0.261 0.739 15 C -0.062 4.062 16 C -0.022 4.022 17 N -0.129 5.129 18 N -0.040 5.040 19 N -0.074 5.074 20 H 0.329 0.671 21 N -0.166 5.166 22 C -0.085 4.085 23 C 0.042 3.958 24 N -0.307 5.307 25 C -0.382 4.382 26 H 0.086 0.914 27 C -0.192 4.192 28 N -0.543 5.543 29 Si 0.729 3.271 30 H -0.216 1.216 31 H -0.216 1.216 32 H -0.204 1.204 33 H 0.056 0.944 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.221 0.779 41 H 0.201 0.799 42 H 0.178 0.822 43 H 0.034 0.966 44 H 0.112 0.888 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 20.093 -3.023 10.339 22.798 hybrid contribution 0.892 0.493 -0.178 1.035 sum 20.985 -2.530 10.161 23.452 Atomic orbital electron populations 1.21798 0.96081 1.01395 1.00110 1.20473 0.92995 0.93512 0.87148 0.95878 1.22049 0.94407 1.01326 0.98847 1.21675 0.97326 0.99565 0.96816 1.21953 0.77796 1.00896 0.98039 0.89944 1.45887 1.08384 1.26568 1.56072 1.17272 0.85827 0.81514 0.78547 1.90833 1.62802 1.42168 1.44875 1.19841 0.93373 0.99569 1.09307 1.22428 0.82700 0.99914 1.02172 1.41454 1.08787 1.19912 1.41919 0.73935 1.16356 0.89862 0.91867 1.08164 1.22515 0.88535 0.93356 0.97768 1.76222 1.11782 1.10047 1.14820 1.78971 0.94378 1.16047 1.14570 1.47617 1.12805 1.13607 1.33335 0.67074 1.74926 1.05672 1.14885 1.21087 1.21059 0.89125 0.99314 0.98994 1.21067 0.83415 0.96847 0.94479 1.44012 1.02655 1.64750 1.19252 1.19095 0.95105 1.38052 0.85988 0.91367 1.25074 0.97781 0.99295 0.97054 1.69999 1.24030 1.43596 1.16675 0.86351 0.79295 0.80060 0.81380 1.21618 1.21552 1.20410 0.94423 0.92044 0.92788 0.92813 0.92059 0.92396 0.93124 0.77929 0.79918 0.82207 0.96603 0.88820 0.93769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 7.96 37.16 0.30 -2.28 16 2 C 0.17 3.39 3.49 -67.60 -0.24 3.16 16 3 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 4 C -0.13 -2.14 5.37 -26.61 -0.14 -2.29 16 5 C -0.12 -1.83 5.35 -26.69 -0.14 -1.97 16 6 C 0.12 2.29 2.60 -67.81 -0.18 2.11 16 7 H 0.08 1.84 7.58 -51.93 -0.39 1.45 16 8 N -0.72 -11.50 5.07 -54.80 -0.28 -11.77 16 9 C 0.58 10.50 7.78 -12.57 -0.10 10.40 16 10 O -0.53 -12.32 16.59 5.26 0.09 -12.23 16 11 C -0.21 -2.95 6.14 -104.96 -0.64 -3.59 16 12 C 0.07 0.63 11.44 -16.41 -0.19 0.44 16 13 N -0.53 -4.43 6.01 -9.19 -0.06 -4.49 16 14 H 0.42 2.24 8.96 -40.82 -0.37 1.87 16 15 C 0.05 0.57 7.08 -82.32 -0.58 -0.01 16 16 C 0.26 2.95 8.20 -156.26 -1.28 1.67 16 17 N -0.26 -3.24 12.52 32.09 0.40 -2.84 16 18 N -0.04 -0.45 13.47 60.35 0.81 0.37 16 19 N -0.23 -1.54 7.90 60.35 0.48 -1.06 16 20 H 0.48 0.79 8.96 -340.33 -3.05 -2.26 16 21 N -0.31 -2.80 12.41 32.11 0.40 -2.40 16 22 C -0.06 -0.80 10.59 -39.09 -0.41 -1.21 16 23 C 0.17 4.10 4.86 -3.71 -0.02 4.08 16 24 N -0.58 -14.61 2.99 -164.78 -0.49 -15.10 16 25 C -0.25 -7.00 8.58 -15.06 -0.13 -7.13 16 26 H 0.07 1.84 6.24 -52.49 -0.33 1.51 16 27 C 0.01 0.20 4.94 -17.43 -0.09 0.12 16 28 N -0.90 -26.98 11.23 55.49 0.62 -26.36 16 29 Si 0.90 22.80 29.58 -169.99 -5.03 17.77 16 30 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 31 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 32 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 33 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 1.25 7.66 -51.93 -0.40 0.86 16 35 H 0.05 1.04 7.42 -51.93 -0.39 0.65 16 36 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.39 4.56 7.52 -40.82 -0.31 4.25 16 41 H 0.18 0.96 7.44 -52.49 -0.39 0.57 16 42 H 0.16 2.40 8.06 -52.49 -0.42 1.98 16 43 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.09 2.71 6.15 -51.93 -0.32 2.39 16 45 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 374.76 15.07 5.65 5.65 Total: -1.00 -37.45 374.76 -9.71 -47.16 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -8.45 Total: 1.81 kcal Atomic # 6 Polarization: 7.35 SS G_CDS: -3.84 Total: 3.50 kcal Atomic # 7 Polarization: -65.54 SS G_CDS: 1.89 Total: -63.66 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: 0.09 Total: -12.23 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.03 Total: 17.77 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -37.45 -9.71 -47.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590235647.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.923 kcal (2) G-P(sol) polarization free energy of solvation -37.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 165.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 155.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds