Wall clock time and date at job start Wed Apr 1 2020 02:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.58673 * 2 1 4 4 C 1.53191 * 109.58229 * 120.28336 * 2 1 3 5 5 C 1.53041 * 109.31394 * 174.56566 * 4 2 1 6 6 C 1.53040 * 109.53557 * 298.63509 * 5 4 2 7 7 H 1.09000 * 109.49826 * 301.40916 * 6 5 4 8 8 N 1.46498 * 109.49601 * 181.31313 * 6 5 4 9 9 C 1.34779 * 120.00097 * 155.00026 * 8 6 5 10 10 O 1.21623 * 119.99918 * 359.97438 * 9 8 6 11 11 C 1.47308 * 120.00138 * 180.02562 * 9 8 6 12 12 C 1.37825 * 126.52710 * 359.68891 * 11 9 8 13 13 N 1.34786 * 108.24973 * 179.83700 * 12 11 9 14 14 H 0.97004 * 125.36456 * 180.17482 * 13 12 11 15 15 C 1.37309 * 109.26906 * 0.43103 * 13 12 11 16 16 C 1.48007 * 125.76068 * 179.71137 * 15 13 12 17 17 N 1.34174 * 126.69342 * 180.02562 * 16 15 13 18 18 N 1.28990 * 107.24979 * 180.02562 * 17 16 15 19 19 N 1.28720 * 108.98720 * 359.97438 * 18 17 16 20 20 H 0.97001 * 125.32172 * 180.02562 * 19 18 17 21 21 N 1.28873 * 109.35570 * 359.73031 * 19 18 17 22 22 C 1.35702 * 108.47624 * 359.73537 * 15 13 12 23 23 C 1.53197 * 109.31384 * 61.36343 * 6 5 4 24 24 N 1.46921 * 109.70627 * 239.64259 * 2 1 3 25 25 C 1.36944 * 120.63036 * 6.51200 * 24 2 1 26 26 H 1.07995 * 119.99899 * 330.20373 * 25 24 2 27 27 C 1.38810 * 119.99902 * 150.20045 * 25 24 2 28 28 N 1.31620 * 119.99942 * 344.48280 * 27 25 24 29 29 Si 1.86795 * 119.99872 * 164.47877 * 27 25 24 30 30 H 1.48509 * 109.47049 * 90.00392 * 29 27 25 31 31 H 1.48497 * 109.47148 * 209.99933 * 29 27 25 32 32 H 1.48495 * 109.47222 * 330.00437 * 29 27 25 33 33 H 1.09000 * 109.47456 * 300.00245 * 1 2 3 34 34 H 1.09001 * 109.46694 * 60.00114 * 1 2 3 35 35 H 1.09003 * 109.47396 * 179.97438 * 1 2 3 36 36 H 1.09000 * 109.49925 * 294.51526 * 4 2 1 37 37 H 1.09002 * 109.49898 * 54.61022 * 4 2 1 38 38 H 1.09006 * 109.45921 * 58.65326 * 5 4 2 39 39 H 1.08993 * 109.46150 * 178.61238 * 5 4 2 40 40 H 0.96998 * 120.00367 * 334.99799 * 8 6 5 41 41 H 1.07996 * 125.87570 * 359.97438 * 12 11 9 42 42 H 1.07998 * 126.46771 * 179.97438 * 22 15 13 43 43 H 1.08996 * 109.58698 * 65.15033 * 23 6 5 44 44 H 1.08994 * 109.58664 * 185.43222 * 23 6 5 45 45 H 0.97005 * 119.99905 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0434 -0.7278 1.2464 5 6 3.5677 -0.8434 1.1731 6 6 3.9603 -1.6609 -0.0597 7 1 3.5036 -2.6489 -0.0016 8 7 5.4179 -1.7976 -0.1119 9 6 5.9743 -2.8396 -0.7609 10 8 5.2662 -3.6667 -1.3029 11 6 7.4400 -2.9773 -0.8129 12 6 8.3647 -2.1219 -0.2537 13 7 9.5967 -2.5993 -0.5203 14 1 10.4302 -2.1901 -0.2397 15 6 9.4860 -3.7530 -1.2564 16 6 10.6132 -4.5744 -1.7518 17 7 10.5269 -5.7031 -2.4721 18 7 11.7314 -6.1055 -2.6984 19 7 12.5573 -5.2816 -2.1544 20 1 13.5240 -5.3579 -2.1796 21 7 11.8993 -4.3363 -1.5764 22 6 8.1688 -4.0128 -1.4536 23 6 3.4685 -0.9436 -1.3209 24 7 2.0254 -0.6990 -1.1935 25 6 1.1585 -1.1152 -2.1685 26 1 0.1448 -1.3840 -1.9108 27 6 1.5827 -1.1915 -3.4880 28 7 2.6926 -0.5886 -3.8583 29 14 0.5786 -2.1499 -4.7379 30 1 -0.4165 -1.2471 -5.3706 31 1 1.4812 -2.7000 -5.7810 32 1 -0.1273 -3.2643 -4.0561 33 1 -0.3634 0.5139 0.8899 34 1 -0.3633 0.5138 -0.8900 35 1 -0.3634 -1.0277 -0.0005 36 1 1.7637 -0.1655 2.1372 37 1 1.6047 -1.7246 1.2922 38 1 4.0045 0.1528 1.1023 39 1 3.9379 -1.3391 2.0704 40 1 5.9827 -1.1382 0.3206 41 1 8.1407 -1.2248 0.3042 42 1 7.7536 -4.8493 -1.9960 43 1 3.9920 0.0063 -1.4286 44 1 3.6599 -1.5673 -2.1941 45 1 2.9889 -0.6416 -4.7805 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001590235647.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:58 Heat of formation + Delta-G solvation = 125.560281 kcal Electronic energy + Delta-G solvation = -29632.072077 eV Core-core repulsion = 25494.733886 eV Total energy + Delta-G solvation = -4137.338191 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -45.52429 -42.38087 -40.48072 -38.98292 -35.88506 -35.47558 -34.60951 -34.44458 -32.74375 -31.93113 -31.64191 -30.14968 -27.68650 -26.74825 -25.67768 -25.03920 -24.21656 -23.65256 -22.07169 -21.71854 -21.11299 -20.36779 -20.31246 -19.19146 -18.26651 -18.23060 -17.38079 -17.19224 -16.49242 -16.00528 -15.73358 -15.67237 -15.34048 -15.11469 -15.10108 -14.89497 -14.69182 -14.45674 -14.25778 -14.02771 -13.46135 -13.36891 -13.28000 -13.01300 -12.72359 -12.64845 -12.50445 -12.49488 -12.27001 -12.23659 -12.09594 -12.07024 -11.92299 -11.59740 -11.34670 -11.06319 -10.83667 -10.48332 -10.18336 -9.88710 -9.21412 -8.55015 -7.80726 -5.26285 -0.13075 0.32401 0.81712 1.32117 1.41724 1.47488 1.54095 1.75038 1.85058 2.30608 2.54290 2.65497 2.75914 3.27035 3.36084 3.74354 3.93274 4.03884 4.08145 4.16223 4.18006 4.29947 4.35176 4.38421 4.47906 4.69266 4.78249 4.79327 4.90644 4.96724 5.01187 5.06715 5.14538 5.26374 5.39311 5.41829 5.47649 5.55157 5.59486 5.62008 5.64272 5.68464 5.76135 5.90781 6.40588 6.47084 6.84898 7.04098 7.21635 7.53881 7.96645 8.44994 9.23864 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.014406 B = 0.002523 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.158574 B =11094.823064 C =12564.650349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.153 3.847 3 H 0.024 0.976 4 C -0.119 4.119 5 C -0.105 4.105 6 C 0.133 3.867 7 H 0.046 0.954 8 N -0.702 5.702 9 C 0.578 3.422 10 O -0.599 6.599 11 C -0.253 4.253 12 C 0.117 3.883 13 N -0.502 5.502 14 H 0.444 0.556 15 C 0.055 3.945 16 C 0.243 3.757 17 N -0.296 5.296 18 N -0.053 5.053 19 N -0.194 5.194 20 H 0.496 0.504 21 N -0.295 5.295 22 C -0.088 4.088 23 C 0.180 3.820 24 N -0.604 5.604 25 C -0.248 4.248 26 H 0.072 0.928 27 C -0.054 4.054 28 N -0.931 5.931 29 Si 0.953 3.047 30 H -0.278 1.278 31 H -0.301 1.301 32 H -0.273 1.273 33 H 0.079 0.921 34 H 0.036 0.964 35 H 0.043 0.957 36 H 0.096 0.904 37 H 0.049 0.951 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.414 0.586 41 H 0.236 0.764 42 H 0.131 0.869 43 H 0.001 0.999 44 H 0.037 0.963 45 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.206 -0.079 14.689 26.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.048 3.952 3 H 0.042 0.958 4 C -0.159 4.159 5 C -0.143 4.143 6 C 0.026 3.974 7 H 0.064 0.936 8 N -0.353 5.353 9 C 0.367 3.633 10 O -0.481 6.481 11 C -0.263 4.263 12 C -0.025 4.025 13 N -0.098 5.098 14 H 0.286 0.714 15 C -0.058 4.058 16 C -0.037 4.037 17 N -0.168 5.168 18 N -0.048 5.048 19 N -0.046 5.046 20 H 0.356 0.644 21 N -0.149 5.149 22 C -0.116 4.116 23 C 0.053 3.947 24 N -0.328 5.328 25 C -0.379 4.379 26 H 0.090 0.910 27 C -0.249 4.249 28 N -0.578 5.578 29 Si 0.782 3.218 30 H -0.204 1.204 31 H -0.228 1.228 32 H -0.198 1.198 33 H 0.098 0.902 34 H 0.055 0.945 35 H 0.062 0.938 36 H 0.115 0.885 37 H 0.068 0.932 38 H 0.096 0.904 39 H 0.106 0.894 40 H 0.251 0.749 41 H 0.252 0.748 42 H 0.149 0.851 43 H 0.019 0.981 44 H 0.056 0.944 45 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 22.221 -1.127 13.872 26.220 hybrid contribution 0.384 -0.064 -1.209 1.270 sum 22.606 -1.190 12.663 25.938 Atomic orbital electron populations 1.21738 0.94996 1.01013 1.00999 1.20806 0.94119 0.93479 0.86763 0.95835 1.21961 0.94944 1.00716 0.98237 1.21640 0.96786 1.00132 0.95780 1.21465 0.79438 0.98905 0.97564 0.93569 1.45599 1.07338 1.26741 1.55632 1.17911 0.87422 0.80764 0.77162 1.90791 1.64755 1.44730 1.47816 1.19488 0.91580 1.02071 1.13116 1.22987 0.81404 0.99198 0.98928 1.41424 1.09651 1.18474 1.40206 0.71382 1.16161 0.88912 0.92654 1.08029 1.22499 0.89272 0.93458 0.98511 1.76216 1.13125 1.11242 1.16197 1.78921 0.94156 1.16540 1.15141 1.47716 1.13725 1.12087 1.31047 0.64407 1.74884 1.04598 1.14857 1.20562 1.20925 0.90773 0.99521 1.00384 1.20764 0.83610 0.95328 0.95018 1.44315 1.02597 1.65685 1.20199 1.19424 0.95529 1.36329 0.86620 0.91028 1.25774 0.99116 1.01005 0.98999 1.70151 1.25759 1.45634 1.16221 0.85481 0.78005 0.79101 0.79203 1.20432 1.22831 1.19846 0.90219 0.94451 0.93755 0.88536 0.93245 0.90354 0.89426 0.74905 0.74759 0.85071 0.98065 0.94449 0.94783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.71 7.96 71.98 0.57 -4.14 16 2 C 0.15 6.08 3.49 44.98 0.16 6.24 16 3 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 4 C -0.12 -3.65 5.37 30.67 0.16 -3.49 16 5 C -0.11 -2.97 5.35 30.62 0.16 -2.81 16 6 C 0.13 5.15 2.60 45.07 0.12 5.27 16 7 H 0.05 2.15 7.58 -2.39 -0.02 2.13 16 8 N -0.70 -22.02 5.07 -445.53 -2.26 -24.28 16 9 C 0.58 21.73 7.78 86.63 0.67 22.40 16 10 O -0.60 -30.37 16.59 -4.10 -0.07 -30.44 16 11 C -0.25 -7.08 6.14 -20.08 -0.12 -7.21 16 12 C 0.12 1.76 11.44 84.14 0.96 2.72 16 13 N -0.50 -6.84 6.01 -182.99 -1.10 -7.94 16 14 H 0.44 2.67 8.96 -92.71 -0.83 1.84 16 15 C 0.06 1.24 7.08 40.29 0.29 1.52 16 16 C 0.24 5.38 8.20 137.16 1.12 6.51 16 17 N -0.30 -7.62 12.52 -52.37 -0.66 -8.28 16 18 N -0.05 -1.02 13.47 37.02 0.50 -0.52 16 19 N -0.19 -2.23 7.90 37.02 0.29 -1.94 16 20 H 0.50 0.31 8.96 -347.51 -3.12 -2.80 16 21 N -0.30 -4.62 12.41 -52.33 -0.65 -5.27 16 22 C -0.09 -2.62 10.59 22.59 0.24 -2.38 16 23 C 0.18 9.09 4.86 86.36 0.42 9.51 16 24 N -0.60 -30.94 2.99 -675.26 -2.02 -32.96 16 25 C -0.25 -14.22 8.58 84.03 0.72 -13.50 16 26 H 0.07 3.96 6.24 -2.91 -0.02 3.94 16 27 C -0.05 -3.23 4.94 84.86 0.42 -2.81 16 28 N -0.93 -59.03 11.23 21.65 0.24 -58.79 16 29 Si 0.95 49.00 29.58 68.60 2.03 51.03 16 30 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 31 H -0.30 -15.93 7.11 99.48 0.71 -15.23 16 32 H -0.27 -13.62 7.11 99.48 0.71 -12.91 16 33 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.04 1.50 7.66 -2.39 -0.02 1.48 16 35 H 0.04 1.66 7.42 -2.39 -0.02 1.65 16 36 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 39 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.41 8.41 7.52 -92.71 -0.70 7.71 16 41 H 0.24 0.97 7.44 -2.91 -0.02 0.95 16 42 H 0.13 4.53 8.06 -2.91 -0.02 4.51 16 43 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 44 H 0.04 2.31 6.15 -2.39 -0.01 2.29 16 45 H 0.24 15.18 8.31 -92.70 -0.77 14.41 16 Total: -1.00 -92.32 374.76 -1.35 -93.67 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -3.56 Total: 7.88 kcal Atomic # 6 Polarization: 11.94 SS G_CDS: 5.90 Total: 17.84 kcal Atomic # 7 Polarization: -134.33 SS G_CDS: -5.65 Total: -139.98 kcal Atomic # 8 Polarization: -30.37 SS G_CDS: -0.07 Total: -30.44 kcal Atomic # 14 Polarization: 49.00 SS G_CDS: 2.03 Total: 51.03 kcal Total: -92.32 -1.35 -93.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590235647.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 219.232 kcal (2) G-P(sol) polarization free energy of solvation -92.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds