Wall clock time and date at job start Wed Apr 1 2020 03:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.74737 * 2 1 4 4 C 1.53372 * 109.60885 * 239.57270 * 2 1 3 5 5 N 1.46964 * 108.63658 * 190.83099 * 4 2 1 6 6 C 1.34777 * 120.59342 * 235.20513 * 5 4 2 7 7 O 1.21620 * 119.99879 * 184.61541 * 6 5 4 8 8 C 1.47312 * 119.99936 * 4.61389 * 6 5 4 9 9 C 1.37825 * 126.52408 * 136.65059 * 8 6 5 10 10 N 1.34788 * 108.25010 * 180.02562 * 9 8 6 11 11 H 0.96999 * 125.35987 * 179.97438 * 10 9 8 12 12 C 1.37307 * 109.26913 * 0.23857 * 10 9 8 13 13 C 1.47998 * 125.76043 * 179.74429 * 12 10 9 14 14 N 1.34178 * 126.69711 * 179.71575 * 13 12 10 15 15 N 1.28984 * 107.25707 * 179.89061 * 14 13 12 16 16 N 1.28727 * 108.98113 * 0.37263 * 15 14 13 17 17 H 0.97001 * 125.31380 * 179.80034 * 16 15 14 18 18 N 1.28869 * 109.35725 * 359.76314 * 16 15 14 19 19 C 1.35698 * 108.47409 * 359.60252 * 12 10 9 20 20 C 1.46969 * 118.81067 * 55.47643 * 5 4 2 21 21 C 1.53810 * 108.39906 * 304.48576 * 20 5 4 22 22 H 1.08996 * 109.67897 * 169.38825 * 21 20 5 23 23 C 1.53009 * 109.74117 * 289.85167 * 21 20 5 24 24 N 1.46964 * 108.58102 * 49.63679 * 21 20 5 25 25 C 1.36938 * 120.59436 * 124.62283 * 24 21 20 26 26 H 1.07997 * 120.00327 * 210.01522 * 25 24 21 27 27 C 1.38814 * 119.99652 * 30.02282 * 25 24 21 28 28 N 1.31615 * 120.00196 * 15.50041 * 27 25 24 29 29 Si 1.86801 * 119.99579 * 195.50059 * 27 25 24 30 30 H 1.48497 * 109.47178 * 89.99983 * 29 27 25 31 31 H 1.48506 * 109.46968 * 209.99951 * 29 27 25 32 32 H 1.48496 * 109.47064 * 329.99748 * 29 27 25 33 33 H 1.09002 * 109.47058 * 180.43213 * 1 2 3 34 34 H 1.09001 * 109.47024 * 300.42442 * 1 2 3 35 35 H 1.08997 * 109.47402 * 60.42594 * 1 2 3 36 36 H 1.08997 * 109.61201 * 71.08396 * 4 2 1 37 37 H 1.09004 * 109.74746 * 310.66089 * 4 2 1 38 38 H 1.07996 * 125.87686 * 0.05412 * 9 8 6 39 39 H 1.08001 * 126.47119 * 180.14449 * 19 12 10 40 40 H 1.08993 * 109.60724 * 64.26669 * 20 5 4 41 41 H 1.08997 * 109.60865 * 184.78252 * 20 5 4 42 42 H 1.08999 * 109.46785 * 179.15936 * 23 21 20 43 43 H 1.08998 * 109.46826 * 299.15926 * 23 21 20 44 44 H 1.08996 * 109.47392 * 59.15407 * 23 21 20 45 45 H 0.96998 * 120.00143 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8983 1.0259 0.0000 4 6 2.0447 -0.7317 -1.2458 5 7 3.4908 -0.9489 -1.0989 6 6 4.3492 -0.5133 -2.0423 7 8 5.5342 -0.7718 -1.9522 8 6 3.8520 0.2758 -3.1826 9 6 4.4339 1.4068 -3.7133 10 7 3.6740 1.8288 -4.7434 11 1 3.8560 2.6067 -5.2936 12 6 2.5984 0.9875 -4.8875 13 6 1.5296 1.1162 -5.9031 14 7 0.4744 0.3032 -6.0641 15 7 -0.2152 0.7625 -7.0526 16 7 0.3654 1.8141 -7.5154 17 1 0.0495 2.3462 -8.2623 18 7 1.4315 2.0497 -6.8307 19 6 2.6826 0.0165 -3.9434 20 6 3.9836 -1.6550 0.0921 21 6 3.4694 -0.9184 1.3406 22 1 3.6603 -1.5222 2.2277 23 6 4.1801 0.4300 1.4745 24 7 2.0233 -0.7011 1.1938 25 6 1.1511 -1.1445 2.1518 26 1 0.1478 -1.4340 1.8763 27 6 1.5565 -1.2217 3.4772 28 7 2.6467 -0.5972 3.8693 29 14 0.5548 -2.2121 4.7040 30 1 1.0486 -3.6123 4.7306 31 1 0.6940 -1.6124 6.0555 32 1 -0.8745 -2.1988 4.3014 33 1 -0.3633 -1.0277 0.0078 34 1 -0.3633 0.5204 0.8862 35 1 -0.3634 0.5072 -0.8937 36 1 1.8540 -0.1253 -2.1312 37 1 1.5386 -1.6921 -1.3442 38 1 5.3427 1.8743 -3.3642 39 1 1.9883 -0.7976 -3.7961 40 1 3.6121 -2.6796 0.0897 41 1 5.0736 -1.6583 0.0905 42 1 3.8018 0.9545 2.3519 43 1 5.2522 0.2663 1.5832 44 1 3.9927 1.0296 0.5838 45 1 2.9302 -0.6515 4.7954 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001590293688.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:42 Heat of formation + Delta-G solvation = 177.616708 kcal Electronic energy + Delta-G solvation = -30909.528718 eV Core-core repulsion = 26774.447863 eV Total energy + Delta-G solvation = -4135.080855 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -44.73859 -41.50442 -39.19292 -37.07267 -34.67310 -33.93496 -33.63661 -32.68309 -31.74021 -30.79207 -29.37542 -27.83540 -26.24156 -25.62189 -24.85151 -24.25474 -23.57898 -22.27614 -21.09322 -20.54369 -19.56606 -19.18409 -18.56819 -17.92069 -17.45568 -16.32991 -15.68750 -15.31851 -15.05570 -14.81839 -14.74905 -14.24272 -14.15457 -14.00149 -13.72681 -13.36356 -13.33659 -12.71138 -12.67341 -12.59263 -12.16302 -11.87162 -11.68992 -11.64170 -11.46225 -11.35590 -11.28222 -11.06974 -10.93634 -10.70316 -10.53628 -10.50197 -10.06748 -9.96517 -9.64195 -9.61275 -9.33310 -8.92363 -8.43505 -8.31094 -7.98541 -6.54009 -5.74351 -3.20242 0.64364 1.18670 1.89271 2.03026 2.64825 2.69712 3.39524 3.42789 3.46876 3.47875 3.48079 3.82998 4.08899 4.51472 4.92234 4.97236 5.01801 5.14772 5.25879 5.30736 5.41837 5.62995 5.78497 5.87131 5.91231 6.02677 6.07581 6.17367 6.27667 6.35846 6.40588 6.44222 6.50649 6.57575 6.63878 6.74892 6.90777 6.99397 7.01780 7.11891 7.12888 7.20797 7.67785 7.74352 7.83733 7.88027 8.10831 8.49483 8.75397 9.25234 9.86885 10.44734 11.32243 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.015660 B = 0.003076 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.536308 B = 9101.069079 C =10350.875729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.156 3.844 3 H 0.030 0.970 4 C 0.083 3.917 5 N -0.584 5.584 6 C 0.582 3.418 7 O -0.559 6.559 8 C -0.209 4.209 9 C 0.087 3.913 10 N -0.529 5.529 11 H 0.423 0.577 12 C 0.056 3.944 13 C 0.257 3.743 14 N -0.256 5.256 15 N -0.044 5.044 16 N -0.228 5.228 17 H 0.475 0.525 18 N -0.312 5.312 19 C -0.086 4.086 20 C 0.093 3.907 21 C 0.180 3.820 22 H 0.105 0.895 23 C -0.138 4.138 24 N -0.581 5.581 25 C -0.250 4.250 26 H 0.071 0.929 27 C 0.004 3.996 28 N -0.898 5.898 29 Si 0.900 3.100 30 H -0.288 1.288 31 H -0.293 1.293 32 H -0.280 1.280 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.039 0.961 36 H 0.087 0.913 37 H 0.064 0.936 38 H 0.186 0.814 39 H 0.160 0.840 40 H 0.059 0.941 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.027 0.973 44 H 0.022 0.978 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.359 7.170 -21.356 22.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.048 3.952 3 H 0.047 0.953 4 C -0.042 4.042 5 N -0.314 5.314 6 C 0.370 3.630 7 O -0.439 6.439 8 C -0.218 4.218 9 C -0.052 4.052 10 N -0.124 5.124 11 H 0.261 0.739 12 C -0.057 4.057 13 C -0.023 4.023 14 N -0.129 5.129 15 N -0.039 5.039 16 N -0.074 5.074 17 H 0.329 0.671 18 N -0.165 5.165 19 C -0.114 4.114 20 C -0.030 4.030 21 C 0.073 3.927 22 H 0.123 0.877 23 C -0.197 4.197 24 N -0.304 5.304 25 C -0.380 4.380 26 H 0.088 0.912 27 C -0.194 4.194 28 N -0.542 5.542 29 Si 0.730 3.270 30 H -0.215 1.215 31 H -0.220 1.220 32 H -0.206 1.206 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.058 0.942 36 H 0.105 0.895 37 H 0.082 0.918 38 H 0.203 0.797 39 H 0.177 0.823 40 H 0.077 0.923 41 H 0.098 0.902 42 H 0.093 0.907 43 H 0.046 0.954 44 H 0.041 0.959 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -1.274 6.971 -21.533 22.669 hybrid contribution -0.290 0.466 0.173 0.575 sum -1.564 7.437 -21.359 22.671 Atomic orbital electron populations 1.21756 0.95428 1.01683 1.00422 1.20765 0.93082 0.93993 0.87316 0.95254 1.22756 0.79895 1.00992 1.00511 1.47833 1.07171 1.55689 1.20732 1.17361 0.85378 0.78992 0.81232 1.90734 1.16306 1.59157 1.77743 1.19647 0.99251 1.00785 1.02143 1.22194 0.97144 0.96670 0.89234 1.41465 1.19256 1.24451 1.27185 0.73868 1.16341 0.90913 0.98157 1.00246 1.22528 0.95247 0.89762 0.94738 1.76194 1.03736 1.22890 1.10110 1.78967 1.19800 0.98747 1.06414 1.47620 1.14141 1.19933 1.25661 0.67074 1.74934 1.07479 1.25512 1.08546 1.21157 0.97355 0.98821 0.94104 1.22597 0.99478 0.95450 0.85521 1.20806 0.82907 0.94839 0.94131 0.87734 1.21967 0.97549 0.99433 1.00734 1.44155 1.01897 1.64514 1.19865 1.19181 0.96075 1.36478 0.86263 0.91178 1.25082 0.98068 0.99412 0.96871 1.69986 1.25319 1.42900 1.16010 0.86333 0.79817 0.80025 0.80799 1.21543 1.21958 1.20558 0.92507 0.91803 0.94167 0.89527 0.91756 0.79739 0.82286 0.92309 0.90163 0.90714 0.95360 0.95918 0.93718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.42 7.95 37.16 0.30 -2.13 16 2 C 0.16 3.10 3.23 -67.48 -0.22 2.88 16 3 H 0.03 0.63 7.40 -51.93 -0.38 0.25 16 4 C 0.08 1.43 5.27 -3.60 -0.02 1.41 16 5 N -0.58 -10.86 2.58 -173.52 -0.45 -11.30 16 6 C 0.58 10.54 7.58 -12.57 -0.10 10.45 16 7 O -0.56 -11.67 16.52 5.26 0.09 -11.59 16 8 C -0.21 -2.99 5.37 -104.96 -0.56 -3.55 16 9 C 0.09 0.96 11.92 -16.40 -0.20 0.77 16 10 N -0.53 -4.82 6.01 -9.19 -0.06 -4.88 16 11 H 0.42 2.57 8.96 -40.82 -0.37 2.20 16 12 C 0.06 0.63 7.08 -82.32 -0.58 0.05 16 13 C 0.26 2.84 8.20 -156.26 -1.28 1.56 16 14 N -0.26 -3.06 12.52 32.09 0.40 -2.66 16 15 N -0.04 -0.42 13.47 60.35 0.81 0.39 16 16 N -0.23 -1.50 7.90 60.35 0.48 -1.02 16 17 H 0.48 0.76 8.96 -340.34 -3.05 -2.29 16 18 N -0.31 -2.76 12.41 32.11 0.40 -2.36 16 19 C -0.09 -1.11 8.32 -39.09 -0.33 -1.44 16 20 C 0.09 1.89 5.99 -3.36 -0.02 1.87 16 21 C 0.18 4.14 2.35 -67.25 -0.16 3.98 16 22 H 0.11 2.71 6.06 -51.93 -0.31 2.40 16 23 C -0.14 -3.11 8.95 37.16 0.33 -2.78 16 24 N -0.58 -13.64 2.68 -156.76 -0.42 -14.06 16 25 C -0.25 -6.41 8.57 -15.06 -0.13 -6.54 16 26 H 0.07 1.76 6.23 -52.49 -0.33 1.44 16 27 C 0.00 0.12 4.94 -17.43 -0.09 0.03 16 28 N -0.90 -24.68 10.10 55.49 0.56 -24.12 16 29 Si 0.90 21.10 29.58 -169.99 -5.03 16.07 16 30 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 31 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 32 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 33 H 0.06 1.02 7.32 -51.93 -0.38 0.64 16 34 H 0.06 1.25 7.73 -51.93 -0.40 0.85 16 35 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.09 1.30 3.99 -51.93 -0.21 1.10 16 37 H 0.06 1.10 8.12 -51.93 -0.42 0.68 16 38 H 0.19 1.63 8.06 -52.49 -0.42 1.21 16 39 H 0.16 2.00 7.10 -52.49 -0.37 1.63 16 40 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.08 1.65 6.99 -51.93 -0.36 1.29 16 42 H 0.07 1.89 7.15 -51.93 -0.37 1.51 16 43 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.02 0.49 7.02 -51.93 -0.36 0.12 16 45 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 364.63 15.07 5.49 5.49 Total: -1.00 -33.05 364.63 -8.92 -41.97 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -8.15 Total: 1.52 kcal Atomic # 6 Polarization: 9.60 SS G_CDS: -3.05 Total: 6.56 kcal Atomic # 7 Polarization: -61.75 SS G_CDS: 1.73 Total: -60.02 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.09 Total: -11.59 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.03 Total: 16.07 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.05 -8.92 -41.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590293688.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 219.585 kcal (2) G-P(sol) polarization free energy of solvation -33.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 186.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 177.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds