Wall clock time and date at job start Wed Apr 1 2020 03:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.74737 * 2 1 4 4 C 1.53372 * 109.60885 * 239.57270 * 2 1 3 5 5 N 1.46964 * 108.63658 * 190.83099 * 4 2 1 6 6 C 1.34777 * 120.59342 * 235.20513 * 5 4 2 7 7 O 1.21620 * 119.99879 * 184.61541 * 6 5 4 8 8 C 1.47312 * 119.99936 * 4.61389 * 6 5 4 9 9 C 1.37825 * 126.52408 * 136.65059 * 8 6 5 10 10 N 1.34788 * 108.25010 * 180.02562 * 9 8 6 11 11 H 0.96999 * 125.35987 * 179.97438 * 10 9 8 12 12 C 1.37307 * 109.26913 * 0.23857 * 10 9 8 13 13 C 1.47998 * 125.76043 * 179.74429 * 12 10 9 14 14 N 1.34178 * 126.69711 * 179.71575 * 13 12 10 15 15 N 1.28984 * 107.25707 * 179.89061 * 14 13 12 16 16 N 1.28727 * 108.98113 * 0.37263 * 15 14 13 17 17 H 0.97001 * 125.31380 * 179.80034 * 16 15 14 18 18 N 1.28869 * 109.35725 * 359.76314 * 16 15 14 19 19 C 1.35698 * 108.47409 * 359.60252 * 12 10 9 20 20 C 1.46969 * 118.81067 * 55.47643 * 5 4 2 21 21 C 1.53810 * 108.39906 * 304.48576 * 20 5 4 22 22 H 1.08996 * 109.67897 * 169.38825 * 21 20 5 23 23 C 1.53009 * 109.74117 * 289.85167 * 21 20 5 24 24 N 1.46964 * 108.58102 * 49.63679 * 21 20 5 25 25 C 1.36938 * 120.59436 * 124.62283 * 24 21 20 26 26 H 1.07997 * 120.00327 * 210.01522 * 25 24 21 27 27 C 1.38814 * 119.99652 * 30.02282 * 25 24 21 28 28 N 1.31615 * 120.00196 * 15.50041 * 27 25 24 29 29 Si 1.86801 * 119.99579 * 195.50059 * 27 25 24 30 30 H 1.48497 * 109.47178 * 89.99983 * 29 27 25 31 31 H 1.48506 * 109.46968 * 209.99951 * 29 27 25 32 32 H 1.48496 * 109.47064 * 329.99748 * 29 27 25 33 33 H 1.09002 * 109.47058 * 180.43213 * 1 2 3 34 34 H 1.09001 * 109.47024 * 300.42442 * 1 2 3 35 35 H 1.08997 * 109.47402 * 60.42594 * 1 2 3 36 36 H 1.08997 * 109.61201 * 71.08396 * 4 2 1 37 37 H 1.09004 * 109.74746 * 310.66089 * 4 2 1 38 38 H 1.07996 * 125.87686 * 0.05412 * 9 8 6 39 39 H 1.08001 * 126.47119 * 180.14449 * 19 12 10 40 40 H 1.08993 * 109.60724 * 64.26669 * 20 5 4 41 41 H 1.08997 * 109.60865 * 184.78252 * 20 5 4 42 42 H 1.08999 * 109.46785 * 179.15936 * 23 21 20 43 43 H 1.08998 * 109.46826 * 299.15926 * 23 21 20 44 44 H 1.08996 * 109.47392 * 59.15407 * 23 21 20 45 45 H 0.96998 * 120.00143 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8983 1.0259 0.0000 4 6 2.0447 -0.7317 -1.2458 5 7 3.4908 -0.9489 -1.0989 6 6 4.3492 -0.5133 -2.0423 7 8 5.5342 -0.7718 -1.9522 8 6 3.8520 0.2758 -3.1826 9 6 4.4339 1.4068 -3.7133 10 7 3.6740 1.8288 -4.7434 11 1 3.8560 2.6067 -5.2936 12 6 2.5984 0.9875 -4.8875 13 6 1.5296 1.1162 -5.9031 14 7 0.4744 0.3032 -6.0641 15 7 -0.2152 0.7625 -7.0526 16 7 0.3654 1.8141 -7.5154 17 1 0.0495 2.3462 -8.2623 18 7 1.4315 2.0497 -6.8307 19 6 2.6826 0.0165 -3.9434 20 6 3.9836 -1.6550 0.0921 21 6 3.4694 -0.9184 1.3406 22 1 3.6603 -1.5222 2.2277 23 6 4.1801 0.4300 1.4745 24 7 2.0233 -0.7011 1.1938 25 6 1.1511 -1.1445 2.1518 26 1 0.1478 -1.4340 1.8763 27 6 1.5565 -1.2217 3.4772 28 7 2.6467 -0.5972 3.8693 29 14 0.5548 -2.2121 4.7040 30 1 1.0486 -3.6123 4.7306 31 1 0.6940 -1.6124 6.0555 32 1 -0.8745 -2.1988 4.3014 33 1 -0.3633 -1.0277 0.0078 34 1 -0.3633 0.5204 0.8862 35 1 -0.3634 0.5072 -0.8937 36 1 1.8540 -0.1253 -2.1312 37 1 1.5386 -1.6921 -1.3442 38 1 5.3427 1.8743 -3.3642 39 1 1.9883 -0.7976 -3.7961 40 1 3.6121 -2.6796 0.0897 41 1 5.0736 -1.6583 0.0905 42 1 3.8018 0.9545 2.3519 43 1 5.2522 0.2663 1.5832 44 1 3.9927 1.0296 0.5838 45 1 2.9302 -0.6515 4.7954 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001590293688.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:41 Heat of formation + Delta-G solvation = 154.651875 kcal Electronic energy + Delta-G solvation = -30910.524548 eV Core-core repulsion = 26774.447863 eV Total energy + Delta-G solvation = -4136.076685 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -45.45797 -42.45353 -40.65472 -38.68830 -35.60346 -35.39902 -34.42219 -34.26724 -33.30848 -32.12725 -30.28287 -29.65084 -27.78634 -27.16815 -25.62651 -25.51865 -24.91519 -23.59609 -22.34307 -21.76467 -20.73729 -20.32894 -19.73154 -19.12002 -18.16621 -17.92817 -17.24907 -16.81314 -16.65655 -16.13748 -15.74573 -15.64707 -15.31540 -15.22424 -15.02702 -14.92412 -14.70936 -14.17211 -14.13907 -13.57959 -13.45198 -13.31103 -13.23720 -12.90656 -12.78224 -12.77821 -12.42546 -12.37747 -12.25679 -12.22692 -12.20244 -12.02097 -11.92087 -11.69628 -11.44917 -11.32477 -10.83214 -10.41520 -9.96230 -9.62461 -9.15574 -8.43092 -7.73309 -5.20985 -0.06944 0.38363 0.97190 1.37398 1.52157 1.54934 1.61244 1.78703 1.84653 2.12778 2.40878 2.59823 2.77247 3.33404 3.40446 3.61994 3.81558 4.09974 4.21354 4.25333 4.29598 4.33180 4.41974 4.47814 4.59702 4.66095 4.69544 4.80397 4.82848 4.89725 4.99179 5.00750 5.02071 5.17706 5.23892 5.41654 5.46948 5.51494 5.60176 5.61574 5.70879 5.79453 5.84140 5.92459 6.41033 6.52687 6.67440 7.10632 7.27247 7.33411 7.96603 8.50321 9.30564 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.015660 B = 0.003076 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.536308 B = 9101.069079 C =10350.875729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.151 3.849 3 H 0.016 0.984 4 C 0.095 3.905 5 N -0.590 5.590 6 C 0.584 3.416 7 O -0.593 6.593 8 C -0.244 4.244 9 C 0.109 3.891 10 N -0.507 5.507 11 H 0.441 0.559 12 C 0.063 3.937 13 C 0.243 3.757 14 N -0.285 5.285 15 N -0.052 5.052 16 N -0.197 5.197 17 H 0.495 0.505 18 N -0.301 5.301 19 C -0.098 4.098 20 C 0.105 3.895 21 C 0.183 3.817 22 H 0.071 0.929 23 C -0.120 4.120 24 N -0.595 5.595 25 C -0.249 4.249 26 H 0.075 0.925 27 C -0.046 4.046 28 N -0.924 5.924 29 Si 0.957 3.043 30 H -0.291 1.291 31 H -0.302 1.302 32 H -0.270 1.270 33 H 0.055 0.945 34 H 0.042 0.958 35 H 0.075 0.925 36 H 0.114 0.886 37 H 0.068 0.932 38 H 0.209 0.791 39 H 0.158 0.842 40 H 0.058 0.942 41 H 0.075 0.925 42 H 0.043 0.957 43 H 0.034 0.966 44 H 0.027 0.973 45 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.363 8.353 -24.355 25.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.044 3.956 3 H 0.034 0.966 4 C -0.029 4.029 5 N -0.319 5.319 6 C 0.374 3.626 7 O -0.475 6.475 8 C -0.253 4.253 9 C -0.033 4.033 10 N -0.103 5.103 11 H 0.282 0.718 12 C -0.050 4.050 13 C -0.037 4.037 14 N -0.158 5.158 15 N -0.047 5.047 16 N -0.048 5.048 17 H 0.354 0.646 18 N -0.154 5.154 19 C -0.126 4.126 20 C -0.020 4.020 21 C 0.075 3.925 22 H 0.089 0.911 23 C -0.179 4.179 24 N -0.318 5.318 25 C -0.379 4.379 26 H 0.093 0.907 27 C -0.242 4.242 28 N -0.571 5.571 29 Si 0.787 3.213 30 H -0.218 1.218 31 H -0.229 1.229 32 H -0.195 1.195 33 H 0.074 0.926 34 H 0.061 0.939 35 H 0.093 0.907 36 H 0.132 0.868 37 H 0.086 0.914 38 H 0.225 0.775 39 H 0.175 0.825 40 H 0.076 0.924 41 H 0.094 0.906 42 H 0.063 0.937 43 H 0.053 0.947 44 H 0.046 0.954 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -2.326 8.181 -24.603 26.032 hybrid contribution 0.005 0.208 0.922 0.945 sum -2.321 8.389 -23.682 25.231 Atomic orbital electron populations 1.21667 0.93784 1.01779 1.01160 1.20960 0.94495 0.93220 0.86912 0.96605 1.22701 0.78930 1.01283 0.99957 1.47863 1.07911 1.55832 1.20323 1.17860 0.84734 0.78355 0.81650 1.90706 1.17750 1.60328 1.78723 1.19379 1.01148 1.02488 1.02315 1.22455 0.97116 0.95288 0.88433 1.41417 1.18061 1.24360 1.26433 0.71752 1.16286 0.91205 0.97765 0.99745 1.22475 0.95370 0.90424 0.95445 1.76180 1.04463 1.23948 1.11183 1.78925 1.19865 0.99539 1.06347 1.47713 1.12913 1.18981 1.25201 0.64551 1.74904 1.07798 1.24698 1.08004 1.21094 0.97131 0.99540 0.94791 1.22240 0.99056 0.95212 0.85442 1.20628 0.83241 0.94532 0.94082 0.91093 1.21747 0.97715 0.99066 0.99346 1.44362 1.01820 1.65079 1.20586 1.19463 0.96405 1.35329 0.86683 0.90712 1.25715 0.99243 1.00776 0.98478 1.70142 1.26813 1.44454 1.15646 0.85426 0.79090 0.78364 0.78449 1.21841 1.22930 1.19502 0.92614 0.93853 0.90662 0.86814 0.91380 0.77471 0.82458 0.92404 0.90613 0.93740 0.94695 0.95416 0.94557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.34 7.95 71.98 0.57 -3.77 16 2 C 0.15 5.90 3.23 45.03 0.15 6.04 16 3 H 0.02 0.68 7.40 -2.39 -0.02 0.66 16 4 C 0.10 3.15 5.27 86.42 0.46 3.60 16 5 N -0.59 -21.68 2.58 -821.15 -2.12 -23.80 16 6 C 0.58 20.72 7.58 86.63 0.66 21.37 16 7 O -0.59 -24.62 16.52 -4.10 -0.07 -24.69 16 8 C -0.24 -6.56 5.37 -20.08 -0.11 -6.66 16 9 C 0.11 2.09 11.92 84.14 1.00 3.09 16 10 N -0.51 -7.54 6.01 -183.00 -1.10 -8.64 16 11 H 0.44 3.59 8.96 -92.71 -0.83 2.76 16 12 C 0.06 1.25 7.08 40.29 0.29 1.54 16 13 C 0.24 4.70 8.20 137.15 1.12 5.82 16 14 N -0.29 -6.21 12.52 -52.38 -0.66 -6.87 16 15 N -0.05 -0.87 13.47 37.02 0.50 -0.37 16 16 N -0.20 -1.96 7.90 37.02 0.29 -1.67 16 17 H 0.50 -0.15 8.96 -347.51 -3.12 -3.26 16 18 N -0.30 -4.30 12.41 -52.33 -0.65 -4.95 16 19 C -0.10 -2.32 8.32 22.59 0.19 -2.13 16 20 C 0.10 4.34 5.99 86.56 0.52 4.85 16 21 C 0.18 8.61 2.35 45.18 0.11 8.72 16 22 H 0.07 3.85 6.06 -2.39 -0.01 3.83 16 23 C -0.12 -5.55 8.95 71.99 0.64 -4.90 16 24 N -0.60 -28.26 2.68 -649.86 -1.74 -30.00 16 25 C -0.25 -12.85 8.57 84.03 0.72 -12.13 16 26 H 0.08 3.74 6.23 -2.91 -0.02 3.72 16 27 C -0.05 -2.50 4.94 84.86 0.42 -2.08 16 28 N -0.92 -52.60 10.10 21.65 0.22 -52.38 16 29 Si 0.96 44.18 29.58 68.60 2.03 46.21 16 30 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 31 H -0.30 -14.29 7.11 99.48 0.71 -13.59 16 32 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 33 H 0.05 1.92 7.32 -2.39 -0.02 1.90 16 34 H 0.04 1.65 7.73 -2.39 -0.02 1.64 16 35 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.11 3.20 3.99 -2.39 -0.01 3.19 16 37 H 0.07 2.22 8.12 -2.38 -0.02 2.20 16 38 H 0.21 2.99 8.06 -2.91 -0.02 2.97 16 39 H 0.16 3.71 7.10 -2.91 -0.02 3.69 16 40 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 41 H 0.08 3.19 6.99 -2.39 -0.02 3.17 16 42 H 0.04 2.31 7.15 -2.39 -0.02 2.29 16 43 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.03 1.21 7.02 -2.39 -0.02 1.19 16 45 H 0.25 13.78 8.31 -92.71 -0.77 13.01 16 Total: -1.00 -73.06 364.63 0.57 -72.49 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -2.86 Total: 11.32 kcal Atomic # 6 Polarization: 16.63 SS G_CDS: 6.73 Total: 23.36 kcal Atomic # 7 Polarization: -123.43 SS G_CDS: -5.26 Total: -128.69 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: -0.07 Total: -24.69 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -73.06 0.57 -72.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590293688.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 227.140 kcal (2) G-P(sol) polarization free energy of solvation -73.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 154.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 154.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds