Wall clock time and date at job start Wed Apr 1 2020 03:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 110.64320 * 2 1 4 4 C 1.54320 * 110.71957 * 123.14233 * 2 1 3 5 5 N 1.47030 * 107.26874 * 96.17026 * 4 2 1 6 6 C 1.34780 * 125.64703 * 178.90388 * 5 4 2 7 7 O 1.21619 * 119.99940 * 180.02562 * 6 5 4 8 8 C 1.47310 * 119.99991 * 0.02562 * 6 5 4 9 9 C 1.37824 * 126.52993 * 0.02562 * 8 6 5 10 10 N 1.34779 * 108.25523 * 180.02562 * 9 8 6 11 11 H 0.96999 * 125.36407 * 179.97438 * 10 9 8 12 12 C 1.37306 * 109.26802 * 359.97438 * 10 9 8 13 13 C 1.48005 * 125.76045 * 180.02562 * 12 10 9 14 14 N 1.34178 * 126.69637 * 179.71200 * 13 12 10 15 15 N 1.28988 * 107.25486 * 179.86972 * 14 13 12 16 16 N 1.28719 * 108.98110 * 0.39905 * 15 14 13 17 17 H 0.97005 * 125.31791 * 179.76758 * 16 15 14 18 18 N 1.28872 * 109.36177 * 359.74123 * 16 15 14 19 19 C 1.35695 * 108.47627 * 359.72203 * 12 10 9 20 20 C 1.47417 * 108.70479 * 358.94050 * 5 4 2 21 21 C 1.54907 * 104.83364 * 24.12527 * 20 5 4 22 22 H 1.09006 * 111.00095 * 81.06690 * 21 20 5 23 23 C 1.53003 * 111.00736 * 204.91764 * 21 20 5 24 24 N 1.46499 * 109.47113 * 287.19974 * 23 21 20 25 25 C 1.36937 * 119.99908 * 179.97438 * 24 23 21 26 26 H 1.07997 * 120.00168 * 0.02562 * 25 24 23 27 27 C 1.38814 * 119.99763 * 179.97438 * 25 24 23 28 28 N 1.31618 * 120.00202 * 359.97438 * 27 25 24 29 29 Si 1.86795 * 119.99770 * 180.02562 * 27 25 24 30 30 H 1.48508 * 109.47486 * 359.97438 * 29 27 25 31 31 H 1.48504 * 109.47565 * 120.00114 * 29 27 25 32 32 H 1.48503 * 109.47328 * 240.00134 * 29 27 25 33 33 H 1.09001 * 109.47002 * 298.30827 * 1 2 3 34 34 H 1.08993 * 109.46955 * 58.31265 * 1 2 3 35 35 H 1.09000 * 109.47050 * 178.31094 * 1 2 3 36 36 H 1.09000 * 109.88340 * 215.58250 * 4 2 1 37 37 H 1.08996 * 109.88624 * 336.75149 * 4 2 1 38 38 H 1.07999 * 125.87206 * 0.02562 * 9 8 6 39 39 H 1.07992 * 126.47475 * 180.27957 * 19 12 10 40 40 H 1.08996 * 110.37128 * 142.96688 * 20 5 4 41 41 H 1.09010 * 110.36651 * 265.29083 * 20 5 4 42 42 H 1.09001 * 109.47012 * 47.19563 * 23 21 20 43 43 H 1.08997 * 109.47140 * 167.19819 * 23 21 20 44 44 H 0.96999 * 120.00147 * 359.97438 * 24 23 21 45 45 H 0.96995 * 119.99823 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0760 -0.7891 1.2086 5 7 2.3716 -2.1519 0.7425 6 6 2.8863 -3.1449 1.4946 7 8 3.0910 -4.2376 1.0015 8 6 3.2008 -2.9067 2.9139 9 6 3.0237 -1.7286 3.6069 10 7 3.4319 -1.9205 4.8770 11 1 3.4162 -1.2512 5.5789 12 6 3.8734 -3.2126 5.0207 13 6 4.4014 -3.8127 6.2664 14 7 4.8324 -5.0729 6.4292 15 7 5.2110 -5.1922 7.6565 16 7 5.0277 -4.0712 8.2620 17 1 5.2293 -3.8982 9.1950 18 7 4.5349 -3.2145 7.4350 19 6 3.7377 -3.8484 3.8296 20 6 2.0126 -2.2521 -0.6838 21 6 2.0789 -0.7975 -1.2125 22 1 3.1061 -0.5098 -1.4367 23 6 1.1814 -0.6182 -2.4386 24 7 1.7912 -1.2848 -3.5918 25 6 1.1636 -1.2585 -4.8086 26 1 0.2193 -0.7460 -4.9182 27 6 1.7416 -1.8897 -5.9015 28 7 2.8932 -2.5130 -5.7683 29 14 0.8858 -1.8533 -7.5614 30 1 -0.3849 -1.0933 -7.4468 31 1 1.7680 -1.1959 -8.5590 32 1 0.5935 -3.2422 -7.9983 33 1 -0.3633 0.4873 0.9048 34 1 -0.3633 0.5398 -0.8744 35 1 -0.3633 -1.0272 -0.0303 36 1 2.9869 -0.3181 1.5780 37 1 1.3264 -0.8221 1.9991 38 1 2.6261 -0.8098 3.2019 39 1 3.9931 -4.8761 3.6178 40 1 2.7293 -2.8808 -1.2121 41 1 1.0038 -2.6502 -0.7940 42 1 0.2036 -1.0571 -2.2404 43 1 1.0662 0.4444 -2.6521 44 1 2.6395 -1.7447 -3.4935 45 1 3.2969 -2.9543 -6.5319 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001590294014.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:35 Heat of formation + Delta-G solvation = 158.432142 kcal Electronic energy + Delta-G solvation = -29071.500849 eV Core-core repulsion = 24935.588088 eV Total energy + Delta-G solvation = -4135.912761 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.87673 -41.72581 -39.80925 -37.68271 -34.83076 -34.65163 -33.80606 -32.81578 -31.61251 -31.15484 -30.00477 -28.61935 -26.76605 -25.63073 -25.01426 -24.22090 -23.64786 -22.26517 -21.34448 -21.09015 -19.75669 -19.38534 -19.20247 -17.87862 -17.59329 -16.97420 -16.61117 -15.95940 -15.22269 -15.07688 -14.79132 -14.62545 -14.36481 -14.34263 -13.80551 -13.71882 -13.46198 -13.15640 -12.89349 -12.73485 -12.65223 -12.48477 -12.34781 -12.10517 -11.82731 -11.73175 -11.58901 -11.49237 -11.43889 -10.98336 -10.82277 -10.49638 -10.37414 -10.29942 -9.94287 -9.77117 -9.63555 -9.34458 -8.83497 -8.53805 -8.43751 -6.87666 -5.71380 -3.00563 0.50318 1.02882 1.62258 1.76112 2.45423 2.51786 3.06315 3.42372 3.47204 3.52264 3.55002 3.56287 3.91360 4.47035 4.52753 4.58222 4.65930 4.77953 4.85995 4.87324 4.98424 5.07316 5.25853 5.37645 5.41798 5.53349 5.56007 5.64468 5.76740 5.80979 5.88338 5.89737 5.99717 6.09128 6.18618 6.25602 6.26173 6.38904 6.41248 6.46673 6.56792 6.73078 6.87235 6.88239 7.69958 7.70859 7.74472 8.41258 8.46918 9.58148 10.15851 10.49789 11.51336 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.024833 B = 0.001900 C = 0.001791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.256229 B =14730.086168 C =15627.667446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.098 4.098 3 H 0.089 0.911 4 C 0.097 3.903 5 N -0.614 5.614 6 C 0.599 3.401 7 O -0.536 6.536 8 C -0.214 4.214 9 C 0.058 3.942 10 N -0.526 5.526 11 H 0.424 0.576 12 C 0.053 3.947 13 C 0.255 3.745 14 N -0.255 5.255 15 N -0.043 5.043 16 N -0.227 5.227 17 H 0.476 0.524 18 N -0.311 5.311 19 C -0.058 4.058 20 C 0.119 3.881 21 C -0.102 4.102 22 H 0.085 0.915 23 C 0.166 3.834 24 N -0.733 5.733 25 C -0.240 4.240 26 H 0.071 0.929 27 C -0.014 4.014 28 N -0.931 5.931 29 Si 0.906 3.094 30 H -0.281 1.281 31 H -0.292 1.292 32 H -0.292 1.292 33 H 0.051 0.949 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.195 0.805 39 H 0.161 0.839 40 H 0.084 0.916 41 H 0.071 0.929 42 H 0.025 0.975 43 H 0.023 0.977 44 H 0.384 0.616 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.156 6.101 31.988 32.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.117 4.117 3 H 0.107 0.893 4 C -0.026 4.026 5 N -0.348 5.348 6 C 0.388 3.612 7 O -0.413 6.413 8 C -0.224 4.224 9 C -0.082 4.082 10 N -0.120 5.120 11 H 0.262 0.738 12 C -0.059 4.059 13 C -0.025 4.025 14 N -0.129 5.129 15 N -0.038 5.038 16 N -0.072 5.072 17 H 0.330 0.670 18 N -0.163 5.163 19 C -0.086 4.086 20 C -0.003 4.003 21 C -0.121 4.121 22 H 0.104 0.896 23 C 0.038 3.962 24 N -0.378 5.378 25 C -0.371 4.371 26 H 0.088 0.912 27 C -0.210 4.210 28 N -0.579 5.579 29 Si 0.737 3.263 30 H -0.206 1.206 31 H -0.219 1.219 32 H -0.219 1.219 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.211 0.789 39 H 0.179 0.821 40 H 0.102 0.898 41 H 0.089 0.911 42 H 0.043 0.957 43 H 0.040 0.960 44 H 0.218 0.782 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.439 5.056 32.162 32.589 hybrid contribution -0.151 0.735 -0.147 0.765 sum 1.287 5.791 32.016 32.561 Atomic orbital electron populations 1.21849 0.94037 1.02527 1.01801 1.22213 0.96654 0.99105 0.93765 0.89289 1.22428 0.99414 0.83120 0.97649 1.48334 1.63348 1.11057 1.12044 1.16948 0.76865 0.83158 0.84204 1.90824 1.53710 1.23514 1.73274 1.19640 1.13442 0.94673 0.94608 1.23270 1.01176 1.00586 0.83160 1.41567 1.48639 1.10574 1.11231 0.73796 1.16385 1.13194 0.85758 0.90547 1.22507 1.00139 0.88757 0.91089 1.76216 1.14340 1.15666 1.06656 1.78981 1.15470 1.08353 1.01031 1.47631 1.39853 1.05267 1.14492 0.66978 1.74930 1.19742 1.20797 1.00881 1.21024 0.98501 1.00045 0.88989 1.22319 1.01385 0.97697 0.78905 1.22624 1.01145 0.93620 0.94751 0.89621 1.20632 0.94185 0.95867 0.85546 1.42396 1.25635 1.64449 1.05292 1.19240 1.02984 1.28294 0.86597 0.91151 1.24752 0.97311 1.00798 0.98123 1.69670 1.18059 1.40028 1.30153 0.86135 0.78499 0.77192 0.84445 1.20597 1.21941 1.21884 0.92984 0.91419 0.92193 0.91279 0.91196 0.78884 0.82137 0.89763 0.91101 0.95700 0.95964 0.78217 0.93534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 7.91 37.16 0.29 -1.17 16 2 C -0.10 -1.03 3.47 -88.78 -0.31 -1.33 16 3 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 4 C 0.10 0.90 4.57 -3.06 -0.01 0.89 16 5 N -0.61 -8.47 3.33 -171.83 -0.57 -9.04 16 6 C 0.60 9.33 7.84 -12.57 -0.10 9.23 16 7 O -0.54 -10.77 17.18 5.26 0.09 -10.68 16 8 C -0.21 -2.56 6.11 -104.96 -0.64 -3.20 16 9 C 0.06 0.45 10.43 -16.41 -0.17 0.28 16 10 N -0.53 -3.58 6.01 -9.19 -0.06 -3.63 16 11 H 0.42 1.60 8.96 -40.82 -0.37 1.23 16 12 C 0.05 0.52 7.08 -82.32 -0.58 -0.06 16 13 C 0.25 2.49 8.20 -156.26 -1.28 1.21 16 14 N -0.26 -2.81 12.52 32.09 0.40 -2.40 16 15 N -0.04 -0.37 13.47 60.35 0.81 0.44 16 16 N -0.23 -1.21 7.90 60.35 0.48 -0.74 16 17 H 0.48 0.18 8.96 -340.34 -3.05 -2.87 16 18 N -0.31 -2.31 12.41 32.11 0.40 -1.91 16 19 C -0.06 -0.69 10.59 -39.09 -0.41 -1.10 16 20 C 0.12 1.94 6.00 -2.53 -0.02 1.93 16 21 C -0.10 -1.53 2.91 -88.47 -0.26 -1.79 16 22 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 23 C 0.17 3.12 4.54 -4.04 -0.02 3.10 16 24 N -0.73 -18.29 5.55 -59.91 -0.33 -18.62 16 25 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 26 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 27 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 28 N -0.93 -28.53 13.06 55.49 0.72 -27.81 16 29 Si 0.91 22.58 29.55 -169.99 -5.02 17.55 16 30 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 31 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 32 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.74 7.12 -51.93 -0.37 0.37 16 35 H 0.06 0.68 7.34 -51.93 -0.38 0.30 16 36 H 0.07 0.50 6.85 -51.93 -0.36 0.15 16 37 H 0.07 0.50 6.71 -51.93 -0.35 0.15 16 38 H 0.19 0.91 4.39 -52.49 -0.23 0.68 16 39 H 0.16 2.02 8.06 -52.49 -0.42 1.60 16 40 H 0.08 1.64 8.04 -51.93 -0.42 1.22 16 41 H 0.07 1.21 7.48 -51.92 -0.39 0.82 16 42 H 0.03 0.47 6.94 -51.93 -0.36 0.11 16 43 H 0.02 0.42 8.05 -51.93 -0.42 0.00 16 44 H 0.38 10.22 7.67 -40.82 -0.31 9.91 16 45 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 374.58 15.07 5.64 5.64 Total: -1.00 -37.63 374.58 -9.43 -47.06 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -8.24 Total: 3.49 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: -3.76 Total: 0.65 kcal Atomic # 7 Polarization: -65.57 SS G_CDS: 1.85 Total: -63.71 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.09 Total: -10.68 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -37.63 -9.43 -47.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590294014.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 205.488 kcal (2) G-P(sol) polarization free energy of solvation -37.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 167.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 158.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds