Wall clock time and date at job start Wed Apr 1 2020 03:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 110.64320 * 2 1 4 4 C 1.54320 * 110.71957 * 123.14233 * 2 1 3 5 5 N 1.47030 * 107.26874 * 96.17026 * 4 2 1 6 6 C 1.34780 * 125.64703 * 178.90388 * 5 4 2 7 7 O 1.21619 * 119.99940 * 180.02562 * 6 5 4 8 8 C 1.47310 * 119.99991 * 0.02562 * 6 5 4 9 9 C 1.37824 * 126.52993 * 0.02562 * 8 6 5 10 10 N 1.34779 * 108.25523 * 180.02562 * 9 8 6 11 11 H 0.96999 * 125.36407 * 179.97438 * 10 9 8 12 12 C 1.37306 * 109.26802 * 359.97438 * 10 9 8 13 13 C 1.48005 * 125.76045 * 180.02562 * 12 10 9 14 14 N 1.34178 * 126.69637 * 179.71200 * 13 12 10 15 15 N 1.28988 * 107.25486 * 179.86972 * 14 13 12 16 16 N 1.28719 * 108.98110 * 0.39905 * 15 14 13 17 17 H 0.97005 * 125.31791 * 179.76758 * 16 15 14 18 18 N 1.28872 * 109.36177 * 359.74123 * 16 15 14 19 19 C 1.35695 * 108.47627 * 359.72203 * 12 10 9 20 20 C 1.47417 * 108.70479 * 358.94050 * 5 4 2 21 21 C 1.54907 * 104.83364 * 24.12527 * 20 5 4 22 22 H 1.09006 * 111.00095 * 81.06690 * 21 20 5 23 23 C 1.53003 * 111.00736 * 204.91764 * 21 20 5 24 24 N 1.46499 * 109.47113 * 287.19974 * 23 21 20 25 25 C 1.36937 * 119.99908 * 179.97438 * 24 23 21 26 26 H 1.07997 * 120.00168 * 0.02562 * 25 24 23 27 27 C 1.38814 * 119.99763 * 179.97438 * 25 24 23 28 28 N 1.31618 * 120.00202 * 359.97438 * 27 25 24 29 29 Si 1.86795 * 119.99770 * 180.02562 * 27 25 24 30 30 H 1.48508 * 109.47486 * 359.97438 * 29 27 25 31 31 H 1.48504 * 109.47565 * 120.00114 * 29 27 25 32 32 H 1.48503 * 109.47328 * 240.00134 * 29 27 25 33 33 H 1.09001 * 109.47002 * 298.30827 * 1 2 3 34 34 H 1.08993 * 109.46955 * 58.31265 * 1 2 3 35 35 H 1.09000 * 109.47050 * 178.31094 * 1 2 3 36 36 H 1.09000 * 109.88340 * 215.58250 * 4 2 1 37 37 H 1.08996 * 109.88624 * 336.75149 * 4 2 1 38 38 H 1.07999 * 125.87206 * 0.02562 * 9 8 6 39 39 H 1.07992 * 126.47475 * 180.27957 * 19 12 10 40 40 H 1.08996 * 110.37128 * 142.96688 * 20 5 4 41 41 H 1.09010 * 110.36651 * 265.29083 * 20 5 4 42 42 H 1.09001 * 109.47012 * 47.19563 * 23 21 20 43 43 H 1.08997 * 109.47140 * 167.19819 * 23 21 20 44 44 H 0.96999 * 120.00147 * 359.97438 * 24 23 21 45 45 H 0.96995 * 119.99823 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0760 -0.7891 1.2086 5 7 2.3716 -2.1519 0.7425 6 6 2.8863 -3.1449 1.4946 7 8 3.0910 -4.2376 1.0015 8 6 3.2008 -2.9067 2.9139 9 6 3.0237 -1.7286 3.6069 10 7 3.4319 -1.9205 4.8770 11 1 3.4162 -1.2512 5.5789 12 6 3.8734 -3.2126 5.0207 13 6 4.4014 -3.8127 6.2664 14 7 4.8324 -5.0729 6.4292 15 7 5.2110 -5.1922 7.6565 16 7 5.0277 -4.0712 8.2620 17 1 5.2293 -3.8982 9.1950 18 7 4.5349 -3.2145 7.4350 19 6 3.7377 -3.8484 3.8296 20 6 2.0126 -2.2521 -0.6838 21 6 2.0789 -0.7975 -1.2125 22 1 3.1061 -0.5098 -1.4367 23 6 1.1814 -0.6182 -2.4386 24 7 1.7912 -1.2848 -3.5918 25 6 1.1636 -1.2585 -4.8086 26 1 0.2193 -0.7460 -4.9182 27 6 1.7416 -1.8897 -5.9015 28 7 2.8932 -2.5130 -5.7683 29 14 0.8858 -1.8533 -7.5614 30 1 -0.3849 -1.0933 -7.4468 31 1 1.7680 -1.1959 -8.5590 32 1 0.5935 -3.2422 -7.9983 33 1 -0.3633 0.4873 0.9048 34 1 -0.3633 0.5398 -0.8744 35 1 -0.3633 -1.0272 -0.0303 36 1 2.9869 -0.3181 1.5780 37 1 1.3264 -0.8221 1.9991 38 1 2.6261 -0.8098 3.2019 39 1 3.9931 -4.8761 3.6178 40 1 2.7293 -2.8808 -1.2121 41 1 1.0038 -2.6502 -0.7940 42 1 0.2036 -1.0571 -2.2404 43 1 1.0662 0.4444 -2.6521 44 1 2.6395 -1.7447 -3.4935 45 1 3.2969 -2.9543 -6.5319 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001590294014.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:34 Heat of formation + Delta-G solvation = 128.247242 kcal Electronic energy + Delta-G solvation = -29072.809764 eV Core-core repulsion = 24935.588088 eV Total energy + Delta-G solvation = -4137.221676 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -45.51461 -42.50549 -40.88903 -38.91914 -36.42455 -35.46809 -34.55318 -34.15939 -32.78503 -32.41210 -31.05838 -29.82893 -27.66827 -27.12792 -25.68610 -25.27172 -24.86263 -23.71620 -22.34076 -21.83279 -20.54685 -20.42295 -20.14238 -19.12379 -18.46970 -18.22195 -17.69079 -17.15673 -16.59644 -16.28148 -15.87058 -15.61673 -15.37270 -15.25636 -15.13135 -15.00234 -14.58958 -14.48080 -14.10358 -13.95717 -13.62651 -13.50021 -13.36194 -13.16526 -12.96017 -12.88033 -12.74902 -12.53202 -12.48898 -12.25956 -12.07821 -12.06764 -11.84903 -11.54195 -11.44710 -11.34575 -11.01746 -10.88908 -10.19032 -9.57455 -9.25235 -8.95669 -7.91940 -5.20724 -0.12188 0.32574 0.73687 1.32909 1.48194 1.49866 1.59647 1.73508 1.80082 2.04883 2.51370 2.58316 2.72536 3.26863 3.40804 3.48320 3.61095 3.82915 3.92900 4.04404 4.09411 4.20399 4.25793 4.31801 4.35572 4.42683 4.59463 4.63021 4.72904 4.73419 4.89491 4.92399 4.95174 5.00477 5.10783 5.21965 5.30822 5.35559 5.40969 5.48996 5.53885 5.55432 5.61625 5.62795 6.30201 6.37729 6.63693 7.05086 7.26204 7.35826 8.13898 8.34419 9.32082 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.024833 B = 0.001900 C = 0.001791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.256229 B =14730.086168 C =15627.667446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 H 0.122 0.878 4 C 0.088 3.912 5 N -0.611 5.611 6 C 0.591 3.409 7 O -0.603 6.603 8 C -0.249 4.249 9 C 0.103 3.897 10 N -0.502 5.502 11 H 0.444 0.556 12 C 0.059 3.941 13 C 0.240 3.760 14 N -0.294 5.294 15 N -0.053 5.053 16 N -0.195 5.195 17 H 0.496 0.504 18 N -0.295 5.295 19 C -0.085 4.085 20 C 0.123 3.877 21 C -0.095 4.095 22 H 0.076 0.924 23 C 0.166 3.834 24 N -0.749 5.749 25 C -0.239 4.239 26 H 0.080 0.920 27 C -0.082 4.082 28 N -0.972 5.972 29 Si 0.974 3.026 30 H -0.262 1.262 31 H -0.293 1.293 32 H -0.298 1.298 33 H 0.089 0.911 34 H 0.057 0.943 35 H 0.039 0.961 36 H 0.105 0.895 37 H 0.108 0.892 38 H 0.236 0.764 39 H 0.136 0.864 40 H 0.036 0.964 41 H 0.057 0.943 42 H 0.027 0.973 43 H 0.035 0.965 44 H 0.370 0.630 45 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.124 10.091 35.262 36.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.103 4.103 3 H 0.140 0.860 4 C -0.032 4.032 5 N -0.343 5.343 6 C 0.383 3.617 7 O -0.486 6.486 8 C -0.258 4.258 9 C -0.039 4.039 10 N -0.098 5.098 11 H 0.287 0.713 12 C -0.054 4.054 13 C -0.040 4.040 14 N -0.166 5.166 15 N -0.048 5.048 16 N -0.046 5.046 17 H 0.356 0.644 18 N -0.148 5.148 19 C -0.113 4.113 20 C 0.000 4.000 21 C -0.115 4.115 22 H 0.094 0.906 23 C 0.039 3.961 24 N -0.392 5.392 25 C -0.371 4.371 26 H 0.098 0.902 27 C -0.273 4.273 28 N -0.624 5.624 29 Si 0.803 3.197 30 H -0.186 1.186 31 H -0.221 1.221 32 H -0.225 1.225 33 H 0.107 0.893 34 H 0.076 0.924 35 H 0.058 0.942 36 H 0.122 0.878 37 H 0.126 0.874 38 H 0.252 0.748 39 H 0.153 0.847 40 H 0.055 0.945 41 H 0.075 0.925 42 H 0.045 0.955 43 H 0.053 0.947 44 H 0.202 0.798 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 0.120 9.130 35.531 36.685 hybrid contribution 0.228 -0.459 -0.987 1.112 sum 0.348 8.670 34.544 35.617 Atomic orbital electron populations 1.21873 0.93540 1.01585 1.03270 1.22256 0.96952 1.00004 0.91079 0.86028 1.22874 1.02179 0.80155 0.98041 1.48342 1.62528 1.12828 1.10580 1.17566 0.75988 0.82459 0.85645 1.90776 1.56684 1.26304 1.74800 1.19316 1.16756 0.96940 0.92791 1.23636 0.97935 0.99874 0.82446 1.41526 1.46895 1.09786 1.11547 0.71331 1.16195 1.12712 0.86667 0.89782 1.22523 1.01018 0.88687 0.91757 1.76209 1.15688 1.16875 1.07814 1.78934 1.15965 1.09239 1.00648 1.47731 1.37540 1.04150 1.15187 0.64413 1.74890 1.19171 1.20534 1.00207 1.20909 1.00213 0.99671 0.90530 1.22022 0.99134 0.98036 0.80849 1.22460 1.00179 0.93559 0.95267 0.90558 1.20810 0.94607 0.95528 0.85120 1.42689 1.25275 1.64813 1.06405 1.19702 1.02954 1.26801 0.87664 0.90188 1.25616 0.98296 1.01452 1.01982 1.69846 1.19939 1.41779 1.30809 0.85063 0.78038 0.76782 0.79825 1.18574 1.22069 1.22537 0.89263 0.92424 0.94200 0.87759 0.87439 0.74774 0.84656 0.94494 0.92509 0.95524 0.94737 0.79822 0.94197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 7.91 71.98 0.57 -1.83 16 2 C -0.08 -1.43 3.47 -9.60 -0.03 -1.46 16 3 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 4 C 0.09 1.26 4.57 86.73 0.40 1.65 16 5 N -0.61 -16.64 3.33 -815.79 -2.71 -19.36 16 6 C 0.59 19.17 7.84 86.63 0.68 19.85 16 7 O -0.60 -26.68 17.18 -4.09 -0.07 -26.75 16 8 C -0.25 -5.78 6.11 -20.08 -0.12 -5.90 16 9 C 0.10 1.16 10.43 84.14 0.88 2.04 16 10 N -0.50 -4.86 6.01 -183.00 -1.10 -5.96 16 11 H 0.44 1.03 8.96 -92.71 -0.83 0.19 16 12 C 0.06 1.07 7.08 40.29 0.29 1.36 16 13 C 0.24 4.40 8.20 137.16 1.13 5.52 16 14 N -0.29 -6.45 12.52 -52.37 -0.66 -7.11 16 15 N -0.05 -0.86 13.47 37.02 0.50 -0.36 16 16 N -0.19 -1.65 7.90 37.02 0.29 -1.36 16 17 H 0.50 -1.03 8.96 -347.51 -3.12 -4.14 16 18 N -0.29 -3.62 12.41 -52.32 -0.65 -4.27 16 19 C -0.09 -2.10 10.59 22.59 0.24 -1.86 16 20 C 0.12 4.24 6.00 86.86 0.52 4.77 16 21 C -0.10 -2.82 2.91 -9.40 -0.03 -2.84 16 22 H 0.08 2.43 8.14 -2.38 -0.02 2.41 16 23 C 0.17 6.22 4.54 86.38 0.39 6.61 16 24 N -0.75 -38.46 5.55 -343.45 -1.91 -40.37 16 25 C -0.24 -13.51 9.99 84.03 0.84 -12.67 16 26 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 27 C -0.08 -4.82 5.50 84.86 0.47 -4.35 16 28 N -0.97 -61.92 13.06 21.65 0.28 -61.64 16 29 Si 0.97 47.22 29.55 68.60 2.03 49.25 16 30 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 31 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 32 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 33 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.06 1.08 7.12 -2.39 -0.02 1.06 16 35 H 0.04 0.82 7.34 -2.39 -0.02 0.80 16 36 H 0.10 0.85 6.85 -2.39 -0.02 0.83 16 37 H 0.11 0.83 6.71 -2.39 -0.02 0.81 16 38 H 0.24 0.55 4.39 -2.91 -0.01 0.54 16 39 H 0.14 3.90 8.06 -2.91 -0.02 3.88 16 40 H 0.04 1.60 8.04 -2.39 -0.02 1.58 16 41 H 0.06 2.08 7.48 -2.38 -0.02 2.06 16 42 H 0.03 1.01 6.94 -2.39 -0.02 0.99 16 43 H 0.03 1.24 8.05 -2.39 -0.02 1.22 16 44 H 0.37 20.79 7.67 -92.71 -0.71 20.07 16 45 H 0.25 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -90.63 374.58 -1.35 -91.98 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: -3.56 Total: 15.06 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: 6.21 Total: 10.88 kcal Atomic # 7 Polarization: -134.46 SS G_CDS: -5.95 Total: -140.41 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: -0.07 Total: -26.75 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 2.03 Total: 49.25 kcal Total: -90.63 -1.35 -91.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590294014.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 220.223 kcal (2) G-P(sol) polarization free energy of solvation -90.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds