Wall clock time and date at job start Wed Apr 1 2020 03:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 110.64025 * 2 1 4 4 C 1.54315 * 110.71927 * 236.85663 * 2 1 3 5 5 N 1.47023 * 107.27567 * 263.65398 * 4 2 1 6 6 C 1.34773 * 125.65278 * 181.02632 * 5 4 2 7 7 O 1.21624 * 120.00064 * 179.74930 * 6 5 4 8 8 C 1.47316 * 119.99930 * 0.02562 * 6 5 4 9 9 C 1.37827 * 126.52429 * 359.75189 * 8 6 5 10 10 N 1.34779 * 108.24719 * 179.97438 * 9 8 6 11 11 H 0.97006 * 125.35762 * 180.02562 * 10 9 8 12 12 C 1.37307 * 109.27490 * 359.97438 * 10 9 8 13 13 C 1.48000 * 125.76225 * 179.97438 * 12 10 9 14 14 N 1.34179 * 126.69483 * 179.71310 * 13 12 10 15 15 N 1.28983 * 107.25531 * 179.87376 * 14 13 12 16 16 N 1.28727 * 108.98350 * 0.39495 * 15 14 13 17 17 H 0.96992 * 125.31776 * 179.74860 * 16 15 14 18 18 N 1.28863 * 109.35523 * 359.74831 * 16 15 14 19 19 C 1.35704 * 108.47046 * 359.74785 * 12 10 9 20 20 C 1.47423 * 108.69822 * 1.28393 * 5 4 2 21 21 C 1.55123 * 104.72686 * 335.55838 * 20 5 4 22 22 H 1.09004 * 111.19262 * 279.18879 * 21 20 5 23 23 C 1.53000 * 110.94347 * 155.28698 * 21 20 5 24 24 N 1.46500 * 109.46916 * 72.95731 * 23 21 20 25 25 C 1.36937 * 119.99745 * 180.02562 * 24 23 21 26 26 H 1.07998 * 120.00147 * 359.97438 * 25 24 23 27 27 C 1.38815 * 119.99881 * 180.02562 * 25 24 23 28 28 N 1.31621 * 120.00110 * 179.97438 * 27 25 24 29 29 Si 1.86800 * 120.00172 * 359.97438 * 27 25 24 30 30 H 1.48502 * 109.47156 * 89.99895 * 29 27 25 31 31 H 1.48502 * 109.47238 * 210.00419 * 29 27 25 32 32 H 1.48509 * 109.46949 * 330.00211 * 29 27 25 33 33 H 1.08998 * 109.47306 * 181.69277 * 1 2 3 34 34 H 1.09006 * 109.46693 * 301.68532 * 1 2 3 35 35 H 1.08998 * 109.47334 * 61.68683 * 1 2 3 36 36 H 1.08997 * 109.88362 * 144.23704 * 4 2 1 37 37 H 1.09004 * 110.01184 * 23.14161 * 4 2 1 38 38 H 1.07996 * 125.87494 * 359.97438 * 9 8 6 39 39 H 1.07998 * 126.46786 * 180.27374 * 19 12 10 40 40 H 1.09003 * 110.36397 * 94.48794 * 20 5 4 41 41 H 1.09001 * 110.36637 * 216.80223 * 20 5 4 42 42 H 1.09004 * 109.47232 * 192.95317 * 23 21 20 43 43 H 1.08997 * 109.47111 * 312.95832 * 23 21 20 44 44 H 0.96999 * 120.00488 * 359.97438 * 24 23 21 45 45 H 0.96999 * 120.00207 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0760 -0.7891 -1.2085 5 7 2.3756 -2.1507 -0.7416 6 6 2.8902 -3.1436 -1.4937 7 8 3.1023 -4.2341 -0.9987 8 6 3.2015 -2.9063 -2.9139 9 6 3.0171 -1.7303 -3.6087 10 7 3.4245 -1.9224 -4.8790 11 1 3.4043 -1.2543 -5.5821 12 6 3.8738 -3.2121 -5.0209 13 6 4.4034 -3.8115 -6.2661 14 7 4.8519 -5.0662 -6.4244 15 7 5.2202 -5.1885 -7.6544 16 7 5.0296 -4.0697 -8.2619 17 1 5.2291 -3.8974 -9.1953 18 7 4.5323 -3.2146 -7.4360 19 6 3.7548 -3.8428 -3.8252 20 6 2.0141 -2.2517 0.6840 21 6 2.0828 -0.7949 1.2125 22 1 3.1096 -0.5044 1.4347 23 6 1.1873 -0.6156 2.4400 24 7 1.8007 -1.2795 3.5930 25 6 1.1754 -1.2528 4.8110 26 1 0.2303 -0.7420 4.9217 27 6 1.7569 -1.8814 5.9036 28 7 1.1561 -1.8554 7.0744 29 14 3.3919 -2.7643 5.7122 30 1 4.5016 -1.8151 5.9822 31 1 3.4606 -3.8930 6.6748 32 1 3.5133 -3.2867 4.3274 33 1 -0.3634 -1.0272 0.0304 34 1 -0.3633 0.5398 0.8746 35 1 -0.3634 0.4874 -0.9047 36 1 2.9851 -0.3162 -1.5800 37 1 1.3271 -0.8250 -1.9997 38 1 2.6153 -0.8129 -3.2047 39 1 4.0273 -4.8651 -3.6088 40 1 1.0051 -2.6497 0.7922 41 1 2.7297 -2.8810 1.2132 42 1 1.0705 0.4471 2.6525 43 1 0.2100 -1.0567 2.2444 44 1 2.6494 -1.7386 3.4935 45 1 1.5622 -2.2949 7.8378 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001590294018.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:39 Heat of formation + Delta-G solvation = 162.347425 kcal Electronic energy + Delta-G solvation = -29177.904496 eV Core-core repulsion = 25042.161515 eV Total energy + Delta-G solvation = -4135.742981 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -44.92386 -41.79628 -39.91771 -37.79474 -34.91423 -34.81066 -33.85793 -32.88076 -31.68431 -31.34807 -30.17340 -28.91707 -26.85195 -25.87551 -25.06419 -24.28282 -23.63883 -22.06807 -21.34624 -21.15337 -19.83049 -19.48960 -19.38983 -18.00329 -17.63968 -17.32193 -16.76906 -16.03369 -15.32974 -15.17402 -14.86929 -14.65041 -14.42583 -14.34169 -14.01738 -13.80415 -13.56760 -13.18706 -12.85266 -12.76231 -12.72064 -12.63397 -12.48555 -12.23538 -11.87798 -11.87068 -11.68233 -11.63079 -11.48921 -11.25375 -10.86837 -10.53341 -10.51536 -10.35047 -10.04341 -9.86954 -9.54962 -9.41668 -8.85713 -8.60994 -8.54615 -7.19778 -5.73062 -3.08769 0.45617 0.97606 1.54479 1.71679 2.39347 2.45747 2.96595 3.35844 3.43795 3.46808 3.48710 3.52059 3.86228 4.37432 4.44379 4.50551 4.64449 4.72732 4.75141 4.78222 4.92300 4.99973 5.15005 5.26152 5.31919 5.43581 5.47303 5.58839 5.66100 5.69792 5.77094 5.78921 5.85408 5.93775 6.05203 6.13742 6.16112 6.21833 6.32956 6.34555 6.43509 6.61976 6.74508 6.81827 7.59292 7.65474 8.02219 8.30497 8.45718 9.24780 9.97449 10.16416 11.45143 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.020867 B = 0.002081 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.482536 B =13451.832176 C =14518.185061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 H 0.090 0.910 4 C 0.097 3.903 5 N -0.614 5.614 6 C 0.599 3.401 7 O -0.537 6.537 8 C -0.215 4.215 9 C 0.059 3.941 10 N -0.525 5.525 11 H 0.424 0.576 12 C 0.054 3.946 13 C 0.254 3.746 14 N -0.256 5.256 15 N -0.042 5.042 16 N -0.226 5.226 17 H 0.476 0.524 18 N -0.311 5.311 19 C -0.058 4.058 20 C 0.116 3.884 21 C -0.107 4.107 22 H 0.085 0.915 23 C 0.169 3.831 24 N -0.757 5.757 25 C -0.244 4.244 26 H 0.090 0.910 27 C 0.005 3.995 28 N -0.934 5.934 29 Si 0.882 3.118 30 H -0.285 1.285 31 H -0.291 1.291 32 H -0.275 1.275 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.053 0.947 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.195 0.805 39 H 0.161 0.839 40 H 0.074 0.926 41 H 0.080 0.920 42 H 0.032 0.968 43 H 0.033 0.967 44 H 0.361 0.639 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.879 4.743 -35.179 35.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.116 4.116 3 H 0.109 0.891 4 C -0.026 4.026 5 N -0.348 5.348 6 C 0.389 3.611 7 O -0.415 6.415 8 C -0.225 4.225 9 C -0.081 4.081 10 N -0.120 5.120 11 H 0.263 0.737 12 C -0.058 4.058 13 C -0.026 4.026 14 N -0.129 5.129 15 N -0.038 5.038 16 N -0.072 5.072 17 H 0.330 0.670 18 N -0.163 5.163 19 C -0.086 4.086 20 C -0.006 4.006 21 C -0.126 4.126 22 H 0.104 0.896 23 C 0.042 3.958 24 N -0.403 5.403 25 C -0.374 4.374 26 H 0.108 0.892 27 C -0.191 4.191 28 N -0.582 5.582 29 Si 0.712 3.288 30 H -0.211 1.211 31 H -0.217 1.217 32 H -0.201 1.201 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.211 0.789 39 H 0.179 0.821 40 H 0.092 0.908 41 H 0.098 0.902 42 H 0.050 0.950 43 H 0.051 0.949 44 H 0.194 0.806 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.127 3.715 -35.302 35.865 hybrid contribution 1.133 0.215 -0.763 1.383 sum 6.260 3.930 -36.066 36.815 Atomic orbital electron populations 1.21860 0.93826 1.02628 1.02028 1.22196 0.96797 0.99122 0.93449 0.89137 1.22445 0.99510 0.83001 0.97691 1.48322 1.63377 1.11215 1.11918 1.16962 0.76801 0.83064 0.84257 1.90821 1.53677 1.23693 1.73281 1.19610 1.13393 0.94890 0.94579 1.23270 1.01131 1.00538 0.83197 1.41576 1.48488 1.10702 1.11186 0.73744 1.16388 1.12984 0.85968 0.90448 1.22499 1.00073 0.88919 0.91067 1.76213 1.14313 1.15751 1.06621 1.78985 1.15599 1.08372 1.00837 1.47631 1.39736 1.05335 1.14499 0.66952 1.74925 1.19602 1.20790 1.00982 1.21019 0.98512 1.00094 0.88960 1.22385 1.01425 0.97587 0.79183 1.22719 1.01112 0.93737 0.95068 0.89643 1.20619 0.94293 0.96307 0.84587 1.42746 1.24930 1.65644 1.06932 1.19025 1.04438 1.29302 0.84640 0.89224 1.24668 0.98384 1.00565 0.95455 1.69701 1.39656 1.48804 1.00035 0.86578 0.85048 0.79760 0.77376 1.21143 1.21712 1.20055 0.92148 0.91245 0.92835 0.91223 0.91053 0.78861 0.82147 0.90761 0.90180 0.95027 0.94869 0.80628 0.93083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 7.92 37.16 0.29 -1.08 16 2 C -0.10 -0.92 3.46 -88.79 -0.31 -1.23 16 3 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 4 C 0.10 0.82 4.57 -3.07 -0.01 0.81 16 5 N -0.61 -7.94 3.32 -171.69 -0.57 -8.51 16 6 C 0.60 8.87 7.84 -12.57 -0.10 8.77 16 7 O -0.54 -10.34 17.18 5.26 0.09 -10.25 16 8 C -0.21 -2.43 6.11 -104.96 -0.64 -3.07 16 9 C 0.06 0.42 10.43 -16.41 -0.17 0.25 16 10 N -0.53 -3.31 6.01 -9.19 -0.06 -3.37 16 11 H 0.42 1.41 8.96 -40.82 -0.37 1.04 16 12 C 0.05 0.50 7.08 -82.32 -0.58 -0.08 16 13 C 0.25 2.38 8.20 -156.26 -1.28 1.10 16 14 N -0.26 -2.72 12.52 32.09 0.40 -2.31 16 15 N -0.04 -0.35 13.47 60.35 0.81 0.46 16 16 N -0.23 -1.14 7.90 60.35 0.48 -0.67 16 17 H 0.48 0.05 8.96 -340.35 -3.05 -3.00 16 18 N -0.31 -2.20 12.41 32.11 0.40 -1.80 16 19 C -0.06 -0.66 10.59 -39.09 -0.41 -1.07 16 20 C 0.12 1.77 6.01 -2.41 -0.01 1.76 16 21 C -0.11 -1.49 2.93 -88.35 -0.26 -1.74 16 22 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 23 C 0.17 3.02 4.54 -4.04 -0.02 3.00 16 24 N -0.76 -17.65 5.35 -59.91 -0.32 -17.97 16 25 C -0.24 -6.88 10.47 -15.06 -0.16 -7.04 16 26 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 27 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 28 N -0.93 -29.53 13.97 55.49 0.78 -28.75 16 29 Si 0.88 22.58 27.74 -169.99 -4.71 17.87 16 30 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 31 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 32 H -0.27 -6.71 6.52 56.52 0.37 -6.34 16 33 H 0.06 0.65 7.35 -51.93 -0.38 0.27 16 34 H 0.07 0.72 7.13 -51.93 -0.37 0.35 16 35 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.45 6.86 -51.93 -0.36 0.09 16 37 H 0.07 0.46 6.69 -51.93 -0.35 0.11 16 38 H 0.19 0.79 4.38 -52.49 -0.23 0.56 16 39 H 0.16 1.93 8.06 -52.49 -0.42 1.51 16 40 H 0.07 1.18 7.48 -51.93 -0.39 0.79 16 41 H 0.08 1.44 8.03 -51.93 -0.42 1.02 16 42 H 0.03 0.57 8.05 -51.93 -0.42 0.15 16 43 H 0.03 0.60 6.95 -51.93 -0.36 0.24 16 44 H 0.36 8.37 5.53 -40.82 -0.23 8.15 16 45 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 LS Contribution 371.52 15.07 5.60 5.60 Total: -1.00 -38.46 371.52 -9.07 -47.52 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -8.20 Total: 1.77 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: -3.76 Total: 0.42 kcal Atomic # 7 Polarization: -64.85 SS G_CDS: 1.92 Total: -62.93 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.09 Total: -10.25 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -4.71 Total: 17.87 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -38.46 -9.07 -47.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590294018.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 209.870 kcal (2) G-P(sol) polarization free energy of solvation -38.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 171.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 162.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds