Wall clock time and date at job start Wed Apr 1 2020 03:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 110.64025 * 2 1 4 4 C 1.54315 * 110.71927 * 236.85663 * 2 1 3 5 5 N 1.47023 * 107.27567 * 263.65398 * 4 2 1 6 6 C 1.34773 * 125.65278 * 181.02632 * 5 4 2 7 7 O 1.21624 * 120.00064 * 179.74930 * 6 5 4 8 8 C 1.47316 * 119.99930 * 0.02562 * 6 5 4 9 9 C 1.37827 * 126.52429 * 359.75189 * 8 6 5 10 10 N 1.34779 * 108.24719 * 179.97438 * 9 8 6 11 11 H 0.97006 * 125.35762 * 180.02562 * 10 9 8 12 12 C 1.37307 * 109.27490 * 359.97438 * 10 9 8 13 13 C 1.48000 * 125.76225 * 179.97438 * 12 10 9 14 14 N 1.34179 * 126.69483 * 179.71310 * 13 12 10 15 15 N 1.28983 * 107.25531 * 179.87376 * 14 13 12 16 16 N 1.28727 * 108.98350 * 0.39495 * 15 14 13 17 17 H 0.96992 * 125.31776 * 179.74860 * 16 15 14 18 18 N 1.28863 * 109.35523 * 359.74831 * 16 15 14 19 19 C 1.35704 * 108.47046 * 359.74785 * 12 10 9 20 20 C 1.47423 * 108.69822 * 1.28393 * 5 4 2 21 21 C 1.55123 * 104.72686 * 335.55838 * 20 5 4 22 22 H 1.09004 * 111.19262 * 279.18879 * 21 20 5 23 23 C 1.53000 * 110.94347 * 155.28698 * 21 20 5 24 24 N 1.46500 * 109.46916 * 72.95731 * 23 21 20 25 25 C 1.36937 * 119.99745 * 180.02562 * 24 23 21 26 26 H 1.07998 * 120.00147 * 359.97438 * 25 24 23 27 27 C 1.38815 * 119.99881 * 180.02562 * 25 24 23 28 28 N 1.31621 * 120.00110 * 179.97438 * 27 25 24 29 29 Si 1.86800 * 120.00172 * 359.97438 * 27 25 24 30 30 H 1.48502 * 109.47156 * 89.99895 * 29 27 25 31 31 H 1.48502 * 109.47238 * 210.00419 * 29 27 25 32 32 H 1.48509 * 109.46949 * 330.00211 * 29 27 25 33 33 H 1.08998 * 109.47306 * 181.69277 * 1 2 3 34 34 H 1.09006 * 109.46693 * 301.68532 * 1 2 3 35 35 H 1.08998 * 109.47334 * 61.68683 * 1 2 3 36 36 H 1.08997 * 109.88362 * 144.23704 * 4 2 1 37 37 H 1.09004 * 110.01184 * 23.14161 * 4 2 1 38 38 H 1.07996 * 125.87494 * 359.97438 * 9 8 6 39 39 H 1.07998 * 126.46786 * 180.27374 * 19 12 10 40 40 H 1.09003 * 110.36397 * 94.48794 * 20 5 4 41 41 H 1.09001 * 110.36637 * 216.80223 * 20 5 4 42 42 H 1.09004 * 109.47232 * 192.95317 * 23 21 20 43 43 H 1.08997 * 109.47111 * 312.95832 * 23 21 20 44 44 H 0.96999 * 120.00488 * 359.97438 * 24 23 21 45 45 H 0.96999 * 120.00207 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0760 -0.7891 -1.2085 5 7 2.3756 -2.1507 -0.7416 6 6 2.8902 -3.1436 -1.4937 7 8 3.1023 -4.2341 -0.9987 8 6 3.2015 -2.9063 -2.9139 9 6 3.0171 -1.7303 -3.6087 10 7 3.4245 -1.9224 -4.8790 11 1 3.4043 -1.2543 -5.5821 12 6 3.8738 -3.2121 -5.0209 13 6 4.4034 -3.8115 -6.2661 14 7 4.8519 -5.0662 -6.4244 15 7 5.2202 -5.1885 -7.6544 16 7 5.0296 -4.0697 -8.2619 17 1 5.2291 -3.8974 -9.1953 18 7 4.5323 -3.2146 -7.4360 19 6 3.7548 -3.8428 -3.8252 20 6 2.0141 -2.2517 0.6840 21 6 2.0828 -0.7949 1.2125 22 1 3.1096 -0.5044 1.4347 23 6 1.1873 -0.6156 2.4400 24 7 1.8007 -1.2795 3.5930 25 6 1.1754 -1.2528 4.8110 26 1 0.2303 -0.7420 4.9217 27 6 1.7569 -1.8814 5.9036 28 7 1.1561 -1.8554 7.0744 29 14 3.3919 -2.7643 5.7122 30 1 4.5016 -1.8151 5.9822 31 1 3.4606 -3.8930 6.6748 32 1 3.5133 -3.2867 4.3274 33 1 -0.3634 -1.0272 0.0304 34 1 -0.3633 0.5398 0.8746 35 1 -0.3634 0.4874 -0.9047 36 1 2.9851 -0.3162 -1.5800 37 1 1.3271 -0.8250 -1.9997 38 1 2.6153 -0.8129 -3.2047 39 1 4.0273 -4.8651 -3.6088 40 1 1.0051 -2.6497 0.7922 41 1 2.7297 -2.8810 1.2132 42 1 1.0705 0.4471 2.6525 43 1 0.2100 -1.0567 2.2444 44 1 2.6494 -1.7386 3.4935 45 1 1.5622 -2.2949 7.8378 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001590294018.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:37 Heat of formation + Delta-G solvation = 131.229053 kcal Electronic energy + Delta-G solvation = -29179.253890 eV Core-core repulsion = 25042.161515 eV Total energy + Delta-G solvation = -4137.092375 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -45.52385 -42.51300 -40.90837 -38.94770 -36.57734 -35.47798 -34.56340 -34.18924 -33.08910 -32.41981 -31.18275 -29.99087 -27.70247 -27.24599 -25.69072 -25.13035 -24.81685 -23.58244 -22.34734 -21.84516 -20.73142 -20.49014 -20.16430 -19.42759 -18.54026 -18.23119 -17.71732 -17.13971 -16.62762 -16.29712 -15.92842 -15.68967 -15.53669 -15.29511 -15.07954 -14.81206 -14.63996 -14.51246 -14.20265 -14.12642 -13.68329 -13.65122 -13.37079 -13.31030 -13.03871 -12.94921 -12.78199 -12.53562 -12.49897 -12.26936 -12.15126 -12.08505 -11.82654 -11.57270 -11.48614 -11.38307 -11.03501 -10.93080 -10.19888 -9.58849 -9.25973 -9.25936 -8.01862 -5.33585 -0.12941 0.31795 0.72795 1.32063 1.37642 1.40793 1.46785 1.72699 1.79352 2.03254 2.48178 2.50260 2.71685 3.25824 3.29310 3.39380 3.58933 3.75231 3.86680 4.02018 4.04171 4.09385 4.23272 4.29476 4.34191 4.37283 4.55515 4.60825 4.70802 4.72212 4.86136 4.90730 4.94160 4.98373 5.08191 5.20251 5.27880 5.34136 5.39361 5.48010 5.54460 5.60734 5.62141 5.78576 6.22787 6.36711 6.61394 7.04199 7.09886 7.24452 7.87836 8.03788 9.19598 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.020867 B = 0.002081 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.482536 B =13451.832176 C =14518.185061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.083 4.083 3 H 0.123 0.877 4 C 0.088 3.912 5 N -0.611 5.611 6 C 0.592 3.408 7 O -0.602 6.602 8 C -0.249 4.249 9 C 0.103 3.897 10 N -0.503 5.503 11 H 0.444 0.556 12 C 0.058 3.942 13 C 0.240 3.760 14 N -0.294 5.294 15 N -0.053 5.053 16 N -0.195 5.195 17 H 0.496 0.504 18 N -0.295 5.295 19 C -0.085 4.085 20 C 0.116 3.884 21 C -0.099 4.099 22 H 0.087 0.913 23 C 0.167 3.833 24 N -0.762 5.762 25 C -0.228 4.228 26 H 0.062 0.938 27 C -0.062 4.062 28 N -0.982 5.982 29 Si 0.947 3.053 30 H -0.275 1.275 31 H -0.298 1.298 32 H -0.262 1.262 33 H 0.039 0.961 34 H 0.055 0.945 35 H 0.088 0.912 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.237 0.763 39 H 0.136 0.864 40 H 0.059 0.941 41 H 0.042 0.958 42 H 0.040 0.960 43 H 0.030 0.970 44 H 0.362 0.638 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.640 7.904 -39.482 40.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.102 4.102 3 H 0.141 0.859 4 C -0.033 4.033 5 N -0.343 5.343 6 C 0.385 3.615 7 O -0.485 6.485 8 C -0.258 4.258 9 C -0.039 4.039 10 N -0.098 5.098 11 H 0.286 0.714 12 C -0.054 4.054 13 C -0.040 4.040 14 N -0.166 5.166 15 N -0.048 5.048 16 N -0.046 5.046 17 H 0.356 0.644 18 N -0.149 5.149 19 C -0.113 4.113 20 C -0.007 4.007 21 C -0.119 4.119 22 H 0.105 0.895 23 C 0.041 3.959 24 N -0.408 5.408 25 C -0.359 4.359 26 H 0.080 0.920 27 C -0.254 4.254 28 N -0.633 5.633 29 Si 0.775 3.225 30 H -0.200 1.200 31 H -0.225 1.225 32 H -0.187 1.187 33 H 0.059 0.941 34 H 0.074 0.926 35 H 0.106 0.894 36 H 0.124 0.876 37 H 0.124 0.876 38 H 0.252 0.748 39 H 0.154 0.846 40 H 0.078 0.922 41 H 0.061 0.939 42 H 0.058 0.942 43 H 0.048 0.952 44 H 0.195 0.805 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 5.890 6.943 -39.723 40.754 hybrid contribution 0.798 -0.690 0.423 1.136 sum 6.687 6.253 -39.300 40.352 Atomic orbital electron populations 1.21885 0.93767 1.01609 1.03220 1.22239 0.96747 1.00153 0.91078 0.85859 1.22874 1.02227 0.80176 0.97991 1.48326 1.62507 1.12851 1.10609 1.17528 0.75991 0.82404 0.85591 1.90775 1.56602 1.26380 1.74731 1.19315 1.16528 0.97037 0.92931 1.23654 0.97910 0.99886 0.82452 1.41542 1.46809 1.09899 1.11550 0.71362 1.16208 1.12644 0.86911 0.89683 1.22538 1.00865 0.88835 0.91750 1.76203 1.15673 1.16973 1.07748 1.78937 1.16122 1.09259 1.00481 1.47729 1.37476 1.04230 1.15192 0.64431 1.74886 1.19088 1.20546 1.00345 1.20910 1.00142 0.99753 0.90473 1.22163 0.99495 0.98005 0.81014 1.22575 1.00571 0.93683 0.95061 0.89464 1.20810 0.94773 0.95870 0.84456 1.42851 1.24953 1.66061 1.06919 1.19057 1.03200 1.27175 0.86429 0.91958 1.25418 1.02245 1.02412 0.95302 1.69863 1.41675 1.50787 1.00974 0.85520 0.80941 0.78379 0.77618 1.20047 1.22470 1.18679 0.94138 0.92574 0.89363 0.87584 0.87606 0.74757 0.84633 0.92247 0.93897 0.94156 0.95201 0.80506 0.93433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 7.92 71.98 0.57 -1.70 16 2 C -0.08 -1.23 3.46 -9.61 -0.03 -1.26 16 3 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 4 C 0.09 1.05 4.57 86.73 0.40 1.45 16 5 N -0.61 -14.89 3.32 -815.36 -2.71 -17.60 16 6 C 0.59 17.63 7.84 86.63 0.68 18.31 16 7 O -0.60 -24.83 17.18 -4.11 -0.07 -24.90 16 8 C -0.25 -5.28 6.11 -20.08 -0.12 -5.41 16 9 C 0.10 0.99 10.43 84.14 0.88 1.87 16 10 N -0.50 -4.23 6.01 -183.00 -1.10 -5.33 16 11 H 0.44 0.56 8.96 -92.70 -0.83 -0.27 16 12 C 0.06 0.98 7.08 40.29 0.29 1.27 16 13 C 0.24 4.16 8.20 137.15 1.13 5.28 16 14 N -0.29 -6.17 12.52 -52.38 -0.66 -6.83 16 15 N -0.05 -0.82 13.47 37.02 0.50 -0.32 16 16 N -0.19 -1.51 7.90 37.02 0.29 -1.22 16 17 H 0.50 -1.32 8.96 -347.53 -3.11 -4.44 16 18 N -0.30 -3.39 12.41 -52.33 -0.65 -4.04 16 19 C -0.08 -1.95 10.59 22.59 0.24 -1.71 16 20 C 0.12 3.59 6.01 86.93 0.52 4.11 16 21 C -0.10 -2.59 2.93 -9.33 -0.03 -2.62 16 22 H 0.09 2.29 8.14 -2.38 -0.02 2.27 16 23 C 0.17 5.85 4.54 86.38 0.39 6.24 16 24 N -0.76 -35.69 5.35 -343.45 -1.84 -37.53 16 25 C -0.23 -13.09 10.47 84.03 0.88 -12.21 16 26 H 0.06 3.86 8.06 -2.91 -0.02 3.84 16 27 C -0.06 -3.75 5.50 84.86 0.47 -3.29 16 28 N -0.98 -64.00 13.97 21.65 0.30 -63.69 16 29 Si 0.95 47.68 27.74 68.60 1.90 49.58 16 30 H -0.27 -13.27 7.11 99.48 0.71 -12.57 16 31 H -0.30 -15.25 7.11 99.48 0.71 -14.55 16 32 H -0.26 -12.44 6.52 99.48 0.65 -11.79 16 33 H 0.04 0.79 7.35 -2.39 -0.02 0.77 16 34 H 0.06 1.02 7.13 -2.38 -0.02 1.00 16 35 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.11 0.60 6.86 -2.39 -0.02 0.59 16 37 H 0.11 0.63 6.69 -2.38 -0.02 0.62 16 38 H 0.24 0.16 4.38 -2.91 -0.01 0.15 16 39 H 0.14 3.68 8.06 -2.91 -0.02 3.65 16 40 H 0.06 1.97 7.48 -2.39 -0.02 1.95 16 41 H 0.04 1.62 8.03 -2.39 -0.02 1.60 16 42 H 0.04 1.38 8.05 -2.38 -0.02 1.36 16 43 H 0.03 1.08 6.95 -2.39 -0.02 1.07 16 44 H 0.36 16.75 5.53 -92.71 -0.51 16.23 16 45 H 0.26 16.01 8.31 -92.71 -0.77 15.24 16 Total: -1.00 -91.69 371.52 -1.20 -92.89 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -3.42 Total: 8.65 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: 6.25 Total: 10.33 kcal Atomic # 7 Polarization: -130.70 SS G_CDS: -5.86 Total: -136.56 kcal Atomic # 8 Polarization: -24.83 SS G_CDS: -0.07 Total: -24.90 kcal Atomic # 14 Polarization: 47.68 SS G_CDS: 1.90 Total: 49.58 kcal Total: -91.69 -1.20 -92.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590294018.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 224.124 kcal (2) G-P(sol) polarization free energy of solvation -91.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds