Wall clock time and date at job start Wed Apr 1 2020 03:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.49991 * 2 1 4 4 C 1.53195 * 109.50227 * 239.90489 * 2 1 3 5 5 N 1.46923 * 108.77794 * 185.41483 * 4 2 1 6 6 C 1.34777 * 120.63351 * 233.62932 * 5 4 2 7 7 O 1.21629 * 119.99205 * 356.28522 * 6 5 4 8 8 C 1.47302 * 120.00452 * 176.28645 * 6 5 4 9 9 C 1.37826 * 126.52895 * 223.16758 * 8 6 5 10 10 N 1.34785 * 108.25302 * 179.97438 * 9 8 6 11 11 H 0.96995 * 125.36532 * 180.02562 * 10 9 8 12 12 C 1.37312 * 109.26729 * 0.02562 * 10 9 8 13 13 C 1.48005 * 125.75970 * 180.02562 * 12 10 9 14 14 N 1.34174 * 126.69554 * 179.97438 * 13 12 10 15 15 N 1.28982 * 107.25406 * 180.02562 * 14 13 12 16 16 N 1.28721 * 108.98664 * 359.97438 * 15 14 13 17 17 H 0.97001 * 125.32695 * 179.97438 * 16 15 14 18 18 N 1.28871 * 109.35752 * 359.73607 * 16 15 14 19 19 C 1.35699 * 108.47304 * 359.72256 * 12 10 9 20 20 C 1.46994 * 118.75445 * 53.60371 * 5 4 2 21 21 C 1.53191 * 108.74220 * 306.41113 * 20 5 4 22 22 C 1.53039 * 109.33874 * 54.62437 * 21 20 5 23 23 H 1.09000 * 109.46298 * 178.60039 * 22 21 20 24 24 N 1.46503 * 109.46135 * 58.63493 * 22 21 20 25 25 C 1.36941 * 119.99649 * 85.00655 * 24 22 21 26 26 H 1.08006 * 119.99926 * 359.97438 * 25 24 22 27 27 C 1.38809 * 120.00032 * 180.02562 * 25 24 22 28 28 N 1.31618 * 119.99966 * 359.97438 * 27 25 24 29 29 Si 1.86800 * 120.00013 * 179.97438 * 27 25 24 30 30 H 1.48501 * 109.46874 * 89.99951 * 29 27 25 31 31 H 1.48501 * 109.46957 * 209.99941 * 29 27 25 32 32 H 1.48495 * 109.47016 * 329.99635 * 29 27 25 33 33 H 1.09000 * 109.47353 * 299.93327 * 1 2 3 34 34 H 1.09001 * 109.47004 * 59.93640 * 1 2 3 35 35 H 1.09004 * 109.47117 * 179.97438 * 1 2 3 36 36 H 1.09005 * 109.58376 * 305.20243 * 4 2 1 37 37 H 1.08996 * 109.58485 * 65.62503 * 4 2 1 38 38 H 1.07994 * 125.87129 * 359.96494 * 9 8 6 39 39 H 1.08006 * 126.46599 * 180.28309 * 19 12 10 40 40 H 1.09009 * 109.63179 * 186.61559 * 20 5 4 41 41 H 1.09004 * 109.57943 * 66.17876 * 20 5 4 42 42 H 1.08992 * 109.49543 * 294.65260 * 21 20 5 43 43 H 1.09003 * 109.49811 * 174.58684 * 21 20 5 44 44 H 0.96998 * 120.00407 * 265.00267 * 24 22 21 45 45 H 0.96995 * 120.00117 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0414 -0.7241 -1.2494 5 7 3.5047 -0.8294 -1.1693 6 6 4.2813 -0.3862 -2.1777 7 8 3.7708 0.0445 -3.1942 8 6 5.7482 -0.4233 -2.0487 9 6 6.6295 0.5706 -2.4164 10 7 7.8794 0.1514 -2.1361 11 1 8.6907 0.6587 -2.2955 12 6 7.8234 -1.1070 -1.5894 13 6 8.9851 -1.9104 -1.1472 14 7 8.9521 -3.1398 -0.6109 15 7 10.1710 -3.4829 -0.3653 16 7 10.9553 -2.5272 -0.7236 17 1 11.9221 -2.5354 -0.6443 18 7 10.2558 -1.5597 -1.2088 19 6 6.5227 -1.4868 -1.5170 20 6 4.1059 -1.4268 0.0317 21 6 3.5708 -0.6946 1.2663 22 6 2.0408 -0.7228 1.2486 23 1 1.6581 -0.2239 2.1390 24 7 1.5783 -2.1128 1.2313 25 6 1.4467 -2.8052 2.4055 26 1 1.6843 -2.3266 3.3441 27 6 1.0091 -4.1224 2.3891 28 7 0.7201 -4.7057 1.2452 29 14 0.8303 -5.0671 3.9907 30 1 -0.5420 -4.8785 4.5260 31 1 1.0709 -6.5114 3.7429 32 1 1.8198 -4.5623 4.9762 33 1 -0.3634 0.5128 0.8906 34 1 -0.3633 0.5148 -0.8894 35 1 -0.3633 -1.0277 -0.0005 36 1 1.6053 -1.7220 -1.2976 37 1 1.7639 -0.1585 -2.1388 38 1 6.3641 1.5216 -2.8539 39 1 6.1478 -2.4227 -1.1297 40 1 5.1904 -1.3248 -0.0123 41 1 3.8382 -2.4820 0.0879 42 1 3.9159 0.3392 1.2541 43 1 3.9333 -1.1886 2.1678 44 1 1.3653 -2.5427 0.3883 45 1 0.4140 -5.6260 1.2338 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001590294274.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:06 Heat of formation + Delta-G solvation = 155.956831 kcal Electronic energy + Delta-G solvation = -30362.904137 eV Core-core repulsion = 26226.884039 eV Total energy + Delta-G solvation = -4136.020098 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.72303 -41.57134 -39.50142 -37.41010 -34.65882 -34.16426 -33.63122 -32.87099 -31.47607 -31.17863 -29.44236 -29.04435 -26.32486 -25.10307 -24.82202 -24.17793 -23.40401 -22.12737 -21.58768 -20.95057 -19.57716 -19.10057 -18.48483 -17.68111 -17.44093 -17.24649 -16.12025 -15.52643 -15.02179 -14.79786 -14.65888 -14.26658 -14.21675 -14.09755 -13.94670 -13.65577 -13.17345 -13.17045 -12.83574 -12.56434 -12.47391 -12.19508 -11.99454 -11.67216 -11.46778 -11.42280 -11.28532 -11.25409 -11.06869 -10.84655 -10.68286 -10.39409 -10.33598 -10.12467 -9.74407 -9.61774 -9.46238 -9.04632 -8.81996 -8.36594 -8.03368 -6.89152 -5.71610 -2.99566 0.64967 1.19117 1.90128 1.94095 2.60715 2.67032 3.30210 3.41992 3.47151 3.52828 3.54280 3.67895 4.08806 4.64214 4.87841 4.89786 4.93721 5.14852 5.21809 5.32801 5.44815 5.47282 5.60614 5.69910 5.71030 5.86728 5.87934 5.97090 6.03527 6.05504 6.17131 6.23286 6.35654 6.40916 6.45205 6.54191 6.55201 6.60504 6.77710 6.80782 6.87627 7.04222 7.06148 7.13857 7.75623 7.85824 7.89824 8.47080 8.57640 9.58675 10.16138 10.51278 11.50849 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.009794 B = 0.003378 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2858.300004 B = 8287.716531 C =10544.498250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 H 0.065 0.935 4 C 0.120 3.880 5 N -0.592 5.592 6 C 0.587 3.413 7 O -0.558 6.558 8 C -0.212 4.212 9 C 0.086 3.914 10 N -0.529 5.529 11 H 0.424 0.576 12 C 0.058 3.942 13 C 0.255 3.745 14 N -0.252 5.252 15 N -0.042 5.042 16 N -0.228 5.228 17 H 0.475 0.525 18 N -0.313 5.313 19 C -0.084 4.084 20 C 0.104 3.896 21 C -0.149 4.149 22 C 0.179 3.821 23 H 0.048 0.952 24 N -0.718 5.718 25 C -0.236 4.236 26 H 0.069 0.931 27 C -0.011 4.011 28 N -0.931 5.931 29 Si 0.903 3.097 30 H -0.292 1.292 31 H -0.293 1.293 32 H -0.283 1.283 33 H 0.052 0.948 34 H 0.043 0.957 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.185 0.815 39 H 0.162 0.838 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.046 0.954 43 H 0.072 0.928 44 H 0.384 0.616 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.374 11.463 -6.302 23.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.128 4.128 3 H 0.083 0.917 4 C -0.002 4.002 5 N -0.322 5.322 6 C 0.375 3.625 7 O -0.438 6.438 8 C -0.221 4.221 9 C -0.053 4.053 10 N -0.123 5.123 11 H 0.262 0.738 12 C -0.055 4.055 13 C -0.025 4.025 14 N -0.126 5.126 15 N -0.038 5.038 16 N -0.074 5.074 17 H 0.329 0.671 18 N -0.165 5.165 19 C -0.112 4.112 20 C -0.018 4.018 21 C -0.190 4.190 22 C 0.068 3.932 23 H 0.066 0.934 24 N -0.361 5.361 25 C -0.367 4.367 26 H 0.087 0.913 27 C -0.207 4.207 28 N -0.580 5.580 29 Si 0.734 3.266 30 H -0.219 1.219 31 H -0.219 1.219 32 H -0.209 1.209 33 H 0.071 0.929 34 H 0.062 0.938 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.102 0.898 38 H 0.202 0.798 39 H 0.180 0.820 40 H 0.103 0.897 41 H 0.102 0.898 42 H 0.065 0.935 43 H 0.090 0.910 44 H 0.219 0.781 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 19.539 11.106 -6.399 23.368 hybrid contribution 0.776 -0.215 0.606 1.007 sum 20.315 10.892 -5.794 23.767 Atomic orbital electron populations 1.21667 0.94343 1.03174 1.00322 1.21700 0.96368 0.98809 0.95897 0.91705 1.21638 0.78572 1.01566 0.98417 1.47964 1.06848 1.59332 1.18081 1.17353 0.85101 0.77267 0.82758 1.90746 1.75154 1.48763 1.29146 1.19572 0.93530 0.97163 1.11864 1.22157 0.81798 1.00093 1.01301 1.41469 1.08870 1.13697 1.48301 0.73846 1.16356 0.89735 0.87275 1.12104 1.22528 0.88984 0.91516 0.99490 1.76242 1.10574 1.10581 1.15190 1.78996 0.95552 1.14101 1.15111 1.47629 1.12948 1.08173 1.38620 0.67079 1.74917 1.04389 1.16131 1.21108 1.21249 0.89576 1.00125 1.00240 1.22072 0.97725 0.98654 0.83363 1.22507 1.00214 0.98583 0.97679 1.20217 0.90933 0.87314 0.94712 0.93352 1.42472 1.78965 1.07740 1.06897 1.19210 1.37062 0.93871 0.86570 0.91341 1.24681 1.02399 0.97155 0.96478 1.69644 1.51764 1.13008 1.23576 0.86259 0.77654 0.79449 0.83224 1.21944 1.21909 1.20891 0.92921 0.93807 0.91035 0.90657 0.89829 0.79760 0.82023 0.89742 0.89781 0.93490 0.90960 0.78058 0.93574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.05 37.16 0.34 -1.89 16 2 C -0.11 -1.79 2.67 -90.50 -0.24 -2.03 16 3 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 4 C 0.12 2.08 5.41 -3.71 -0.02 2.06 16 5 N -0.59 -9.89 2.97 -174.02 -0.52 -10.41 16 6 C 0.59 9.72 7.59 -12.57 -0.10 9.62 16 7 O -0.56 -10.70 16.52 5.25 0.09 -10.61 16 8 C -0.21 -2.83 5.35 -104.96 -0.56 -3.39 16 9 C 0.09 0.85 11.92 -16.41 -0.20 0.65 16 10 N -0.53 -4.47 6.01 -9.19 -0.06 -4.52 16 11 H 0.42 2.29 8.96 -40.82 -0.37 1.92 16 12 C 0.06 0.64 7.08 -82.32 -0.58 0.06 16 13 C 0.25 2.89 8.20 -156.26 -1.28 1.61 16 14 N -0.25 -3.24 12.52 32.09 0.40 -2.83 16 15 N -0.04 -0.44 13.47 60.35 0.81 0.37 16 16 N -0.23 -1.59 7.90 60.35 0.48 -1.11 16 17 H 0.48 0.92 8.96 -340.34 -3.05 -2.13 16 18 N -0.31 -2.81 12.41 32.11 0.40 -2.41 16 19 C -0.08 -1.08 8.31 -39.09 -0.32 -1.41 16 20 C 0.10 1.72 5.47 -3.67 -0.02 1.70 16 21 C -0.15 -2.53 5.78 -26.61 -0.15 -2.68 16 22 C 0.18 3.37 2.53 -67.88 -0.17 3.20 16 23 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 24 N -0.72 -16.67 3.64 -53.38 -0.19 -16.87 16 25 C -0.24 -6.21 9.93 -15.06 -0.15 -6.36 16 26 H 0.07 1.77 7.83 -52.48 -0.41 1.36 16 27 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 28 N -0.93 -27.31 13.06 55.49 0.72 -26.58 16 29 Si 0.90 22.05 29.55 -169.99 -5.02 17.03 16 30 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 31 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 32 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 1.35 7.54 -51.93 -0.39 0.96 16 36 H 0.08 1.45 6.64 -51.93 -0.34 1.10 16 37 H 0.08 1.44 7.02 -51.93 -0.36 1.07 16 38 H 0.19 1.33 8.06 -52.49 -0.42 0.91 16 39 H 0.16 2.18 7.13 -52.48 -0.37 1.81 16 40 H 0.08 1.24 4.14 -51.92 -0.21 1.03 16 41 H 0.08 1.63 7.74 -51.93 -0.40 1.23 16 42 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 44 H 0.38 9.57 5.93 -40.82 -0.24 9.33 16 45 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 371.20 15.07 5.59 5.59 Total: -1.00 -34.05 371.20 -9.11 -43.16 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -8.25 Total: 8.45 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: -3.56 Total: 0.74 kcal Atomic # 7 Polarization: -66.41 SS G_CDS: 2.05 Total: -64.36 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.09 Total: -10.61 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.05 -9.11 -43.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590294274.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 199.116 kcal (2) G-P(sol) polarization free energy of solvation -34.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 165.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 155.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds